Wall clock time and date at job start Mon Mar 30 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21280 * 119.99940 * 2 1 4 4 N 1.34775 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.47060 * 136.05731 * 359.62794 * 4 2 1 6 6 C 1.53242 * 88.08607 * 207.20707 * 5 4 2 7 7 C 1.50699 * 114.32485 * 220.47466 * 6 5 4 8 8 O 1.21276 * 120.00464 * 73.27012 * 7 6 5 9 9 N 1.34777 * 119.99906 * 253.26918 * 7 6 5 10 10 C 1.46505 * 119.99933 * 5.34624 * 9 7 6 11 11 C 1.50697 * 109.46947 * 90.00257 * 10 9 7 12 12 H 1.08006 * 120.00208 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00152 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99724 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00243 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47195 * 89.99418 * 15 13 11 17 17 H 1.48492 * 109.47158 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.46939 * 329.99824 * 15 13 11 19 19 C 1.46494 * 120.00300 * 185.35308 * 9 7 6 20 20 C 1.53007 * 109.47010 * 299.48732 * 19 9 7 21 21 C 1.52999 * 109.47313 * 59.48544 * 19 9 7 22 22 C 1.47068 * 136.05522 * 180.02562 * 4 2 1 23 23 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46761 * 60.00871 * 1 2 3 25 25 H 1.08993 * 109.47648 * 300.00794 * 1 2 3 26 26 H 1.09003 * 113.47174 * 321.94091 * 5 4 2 27 27 H 1.09005 * 113.46760 * 92.37879 * 5 4 2 28 28 H 1.08995 * 114.19655 * 87.73160 * 6 5 4 29 29 H 1.08998 * 109.47232 * 210.00349 * 10 9 7 30 30 H 1.09001 * 109.47184 * 330.00204 * 10 9 7 31 31 H 0.97006 * 119.99880 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47398 * 179.48807 * 19 9 7 33 33 H 1.08998 * 109.46931 * 67.33672 * 20 19 9 34 34 H 1.08994 * 109.47296 * 187.33680 * 20 19 9 35 35 H 1.09000 * 109.46976 * 307.33702 * 20 19 9 36 36 H 1.08992 * 109.47222 * 53.15735 * 21 19 9 37 37 H 1.09000 * 109.47171 * 173.15695 * 21 19 9 38 38 H 1.08997 * 109.47079 * 293.15134 * 21 19 9 39 39 H 1.09007 * 113.46413 * 267.61602 * 22 4 2 40 40 H 1.08993 * 113.47390 * 38.05343 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.8265 -2.5944 0.0078 6 6 3.1648 -2.8704 0.7015 7 6 3.8766 -4.1039 0.2089 8 8 4.4119 -4.1014 -0.8793 9 7 3.9184 -5.2101 0.9778 10 6 3.1743 -5.2540 2.2391 11 6 1.7881 -5.7882 1.9862 12 1 1.4909 -6.0668 0.9859 13 6 0.8989 -5.9205 3.0315 14 7 1.2607 -5.5808 4.2494 15 14 -0.8192 -6.5834 2.7181 16 1 -0.8135 -8.0613 2.8624 17 1 -1.7640 -5.9938 3.7003 18 1 -1.2459 -6.2220 1.3424 19 6 4.7079 -6.3685 0.5525 20 6 4.1787 -6.8818 -0.7882 21 6 6.1737 -5.9579 0.3986 22 6 3.5942 -1.5739 0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 0.5139 0.8898 26 1 0.9614 -2.8238 0.6299 27 1 1.7566 -3.0294 -0.9893 28 1 3.1274 -2.7997 1.7886 29 1 3.6917 -5.9051 2.9437 30 1 3.1060 -4.2491 2.6558 31 1 0.6352 -5.6742 4.9850 32 1 4.6281 -7.1571 1.3006 33 1 4.3772 -6.1426 -1.5643 34 1 4.6773 -7.8173 -1.0415 35 1 3.1045 -7.0512 -0.7140 36 1 6.5156 -5.4806 1.3169 37 1 6.7799 -6.8421 0.2013 38 1 6.2700 -5.2588 -0.4320 39 1 4.0002 -1.7341 -0.9977 40 1 4.2289 -0.9373 0.6175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615963113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:25 Heat of formation + Delta-G solvation = -53.784668 kcal Electronic energy + Delta-G solvation = -21492.966234 eV Core-core repulsion = 18308.504365 eV Total energy + Delta-G solvation = -3184.461869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97009 -40.40204 -38.70023 -36.90044 -34.97961 -33.30688 -32.00719 -29.59799 -28.79240 -27.96225 -26.98244 -25.27148 -24.53404 -22.28668 -19.99730 -19.70920 -18.55095 -18.05821 -17.95832 -17.02306 -16.76785 -16.58180 -16.19679 -15.68899 -15.41139 -14.54591 -14.41259 -14.29542 -14.00144 -13.85581 -13.60832 -13.57966 -13.33336 -13.21019 -13.16803 -12.90460 -12.78768 -12.69488 -12.58134 -12.14408 -12.06616 -11.74182 -11.68875 -11.54803 -11.09963 -10.59503 -10.34583 -9.81967 -9.38582 -8.14326 -6.27828 1.45195 1.48973 1.51244 1.56540 1.67278 1.75144 2.34239 2.50250 3.16872 3.35873 3.57135 3.72882 3.88466 4.10356 4.22835 4.30268 4.33088 4.44932 4.47546 4.48971 4.60930 4.63961 4.69817 4.77521 4.84058 4.96591 5.02594 5.03296 5.08132 5.13946 5.27619 5.36901 5.48916 5.74383 5.97581 6.12479 6.61295 6.66092 6.89771 7.01866 7.36106 7.47485 8.90896 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.008114 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.140511 B = 3450.125541 C = 5154.749434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.533 3.467 3 O -0.600 6.600 4 N -0.646 5.646 5 C 0.136 3.864 6 C -0.146 4.146 7 C 0.533 3.467 8 O -0.574 6.574 9 N -0.590 5.590 10 C 0.248 3.752 11 C -0.535 4.535 12 H 0.058 0.942 13 C 0.024 3.976 14 N -0.921 5.921 15 Si 0.949 3.051 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.263 1.263 19 C 0.136 3.864 20 C -0.152 4.152 21 C -0.154 4.154 22 C 0.124 3.876 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.017 0.983 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 1.450 -6.526 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.327 3.673 3 O -0.482 6.482 4 N -0.381 5.381 5 C 0.013 3.987 6 C -0.167 4.167 7 C 0.321 3.679 8 O -0.456 6.456 9 N -0.320 5.320 10 C 0.127 3.873 11 C -0.573 4.573 12 H 0.076 0.924 13 C -0.177 4.177 14 N -0.561 5.561 15 Si 0.775 3.225 16 H -0.208 1.208 17 H -0.211 1.211 18 H -0.187 1.187 19 C 0.033 3.967 20 C -0.210 4.210 21 C -0.211 4.211 22 C 0.000 4.000 23 H 0.109 0.891 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.881 2.188 -6.883 7.276 hybrid contribution -0.841 -0.513 0.449 1.083 sum 0.041 1.675 -6.434 6.648 Atomic orbital electron populations 1.21846 0.87594 1.05878 1.06421 1.21213 0.91805 0.80425 0.73903 1.90673 1.72100 1.31797 1.53618 1.49793 1.09763 1.06154 1.72353 1.22747 0.97131 0.77661 1.01150 1.22959 0.98343 0.92971 1.02469 1.19980 0.79604 0.84316 0.83978 1.90549 1.48910 1.84439 1.21708 1.48331 1.46977 1.13771 1.22906 1.19190 0.90267 0.97443 0.80357 1.21645 0.97922 1.43358 0.94397 0.92390 1.25579 1.01906 0.95463 0.94704 1.70013 1.37218 1.48595 1.00236 0.85679 0.80070 0.78368 0.78340 1.20764 1.21137 1.18728 1.21100 0.90999 0.87549 0.97065 1.22067 1.00422 1.01467 0.97084 1.22079 0.94666 1.02577 1.01821 1.22845 0.84399 0.91371 1.01350 0.89057 0.86949 0.87533 0.88260 0.88511 0.86234 0.96487 0.94869 0.92560 0.90026 0.91969 0.90420 0.94053 0.93310 0.89888 0.92316 0.88466 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 10.36 71.23 0.74 -2.53 16 2 C 0.53 16.49 8.19 87.66 0.72 17.20 16 3 O -0.60 -23.37 17.88 -3.03 -0.05 -23.42 16 4 N -0.65 -19.66 3.69 -858.86 -3.17 -22.83 16 5 C 0.14 3.98 7.55 83.09 0.63 4.61 16 6 C -0.15 -4.77 3.78 -11.30 -0.04 -4.81 16 7 C 0.53 19.35 6.57 87.66 0.58 19.93 16 8 O -0.57 -21.88 12.44 -3.02 -0.04 -21.92 16 9 N -0.59 -22.27 2.41 -802.14 -1.93 -24.20 16 10 C 0.25 10.82 5.02 85.63 0.43 11.25 16 11 C -0.53 -25.17 9.39 25.60 0.24 -24.93 16 12 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 13 C 0.02 1.15 5.46 84.65 0.46 1.62 16 14 N -0.92 -47.96 13.29 21.45 0.28 -47.67 16 15 Si 0.95 38.85 29.54 68.60 2.03 40.88 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.29 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 19 C 0.14 4.53 3.28 44.99 0.15 4.68 16 20 C -0.15 -4.79 8.99 71.98 0.65 -4.14 16 21 C -0.15 -4.43 9.01 71.98 0.65 -3.79 16 22 C 0.12 3.81 8.08 83.17 0.67 4.48 16 23 H 0.09 1.65 7.32 -2.39 -0.02 1.63 16 24 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.10 2.83 7.96 -2.39 -0.02 2.81 16 27 H 0.10 2.71 8.10 -2.38 -0.02 2.70 16 28 H 0.12 4.16 6.07 -2.39 -0.01 4.14 16 29 H 0.02 0.80 7.92 -2.39 -0.02 0.78 16 30 H 0.03 1.50 5.76 -2.39 -0.01 1.49 16 31 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 32 H 0.08 2.74 7.79 -2.39 -0.02 2.72 16 33 H 0.06 2.10 6.26 -2.39 -0.01 2.08 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.86 6.50 -2.39 -0.02 1.84 16 39 H 0.10 3.02 7.38 -2.38 -0.02 3.01 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -59.68 330.41 4.00 -55.68 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.02 Total: 19.92 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.86 Total: 23.57 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -4.82 Total: -94.70 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.09 Total: -45.34 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -59.68 4.00 -55.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615963113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.893 kcal (2) G-P(sol) polarization free energy of solvation -59.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds