Wall clock time and date at job start Mon Mar 30 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53001 * 109.47626 * 120.00222 * 2 1 3 5 5 N 1.46490 * 109.47482 * 179.44085 * 4 2 1 6 6 C 1.46503 * 120.00214 * 300.28660 * 5 4 2 7 7 C 1.50708 * 109.46799 * 270.00038 * 6 5 4 8 8 H 1.07996 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99614 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00463 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99883 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47462 * 89.99871 * 11 9 7 13 13 H 1.48500 * 109.47085 * 210.00048 * 11 9 7 14 14 H 1.48502 * 109.46713 * 329.99875 * 11 9 7 15 15 C 1.34781 * 120.00084 * 120.28602 * 5 4 2 16 16 O 1.21281 * 119.99895 * 177.29306 * 15 5 4 17 17 C 1.50694 * 119.99757 * 357.01185 * 15 5 4 18 18 H 1.08999 * 110.21596 * 43.41865 * 17 15 5 19 19 C 1.54486 * 110.24468 * 281.48870 * 17 15 5 20 20 C 1.54626 * 101.76166 * 215.58520 * 19 17 15 21 21 C 1.51282 * 104.20118 * 24.80115 * 20 19 17 22 22 O 1.21275 * 124.94659 * 163.77608 * 21 20 19 23 23 N 1.34568 * 110.13367 * 343.67237 * 21 20 19 24 24 H 1.08997 * 109.47479 * 299.99514 * 1 2 3 25 25 H 1.09000 * 109.47493 * 60.00130 * 1 2 3 26 26 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47037 * 240.00559 * 2 1 3 28 28 H 1.09001 * 109.47406 * 183.36574 * 3 2 1 29 29 H 1.08993 * 109.47508 * 303.37239 * 3 2 1 30 30 H 1.09006 * 109.46891 * 63.37320 * 3 2 1 31 31 H 1.09005 * 109.46758 * 59.43744 * 4 2 1 32 32 H 1.09005 * 109.46989 * 299.44569 * 4 2 1 33 33 H 1.09006 * 109.46843 * 29.99617 * 6 5 4 34 34 H 1.08991 * 109.47481 * 150.00017 * 6 5 4 35 35 H 0.96996 * 120.00005 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.97090 * 333.70318 * 19 17 15 37 37 H 1.09002 * 110.96647 * 97.43416 * 19 17 15 38 38 H 1.09004 * 110.48771 * 143.47839 * 20 19 17 39 39 H 1.09001 * 110.48854 * 265.98374 * 20 19 17 40 40 H 0.97006 * 124.43166 * 179.64275 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5049 -0.7329 1.2424 6 6 4.2273 -1.3711 0.1392 7 6 4.4685 -2.8217 0.4692 8 1 4.1182 -3.2277 1.4067 9 6 5.1353 -3.6307 -0.4262 10 7 5.5604 -3.1368 -1.5685 11 14 5.4335 -5.4290 -0.0175 12 1 4.2944 -6.2442 -0.5103 13 1 6.6870 -5.8838 -0.6710 14 1 5.5564 -5.5883 1.4538 15 6 4.1881 -0.1565 2.2512 16 8 5.3996 -0.2089 2.2708 17 6 3.4469 0.5585 3.3513 18 1 2.5810 -0.0254 3.6633 19 6 3.0033 1.9593 2.8743 20 6 3.1568 2.7953 4.1659 21 6 4.1925 2.0442 4.9733 22 8 4.8020 2.5003 5.9174 23 7 4.3378 0.7956 4.4932 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1283 1.4432 -0.0603 29 1 1.6281 1.9735 -0.8581 30 1 1.7267 1.9386 0.9187 31 1 1.6685 -1.7460 1.2542 32 1 1.6849 -0.2017 2.1392 33 1 3.6345 -1.2997 -0.7728 34 1 5.1830 -0.8684 -0.0083 35 1 6.0292 -3.7061 -2.1986 36 1 3.6616 2.3305 2.0888 37 1 1.9665 1.9467 2.5380 38 1 3.5109 3.7991 3.9309 39 1 2.2105 2.8422 4.7048 40 1 4.9523 0.1373 4.8538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700864827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:12 Heat of formation + Delta-G solvation = -77.397702 kcal Electronic energy + Delta-G solvation = -21630.646516 eV Core-core repulsion = 18445.160709 eV Total energy + Delta-G solvation = -3185.485807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69086 -38.85544 -36.57448 -35.99681 -33.62874 -32.40437 -31.34518 -28.99702 -27.23867 -26.90367 -25.57138 -23.30348 -22.17930 -20.48827 -20.03463 -18.85630 -17.33467 -17.05831 -16.48587 -15.74309 -15.45923 -14.90096 -14.69060 -14.37109 -14.00197 -13.69005 -13.52256 -13.47275 -13.18373 -12.91760 -12.33911 -12.30652 -11.97119 -11.72618 -11.64150 -11.30088 -11.24741 -11.07388 -10.92800 -10.78408 -10.66431 -10.30524 -10.16898 -9.84630 -9.68399 -9.51910 -8.71913 -8.48160 -7.76091 -6.10038 -4.14655 2.60342 3.09194 3.26178 3.33475 3.33717 3.37862 3.81074 4.28917 4.35952 4.42846 4.64904 4.86800 4.93337 5.06433 5.11794 5.25025 5.27313 5.38162 5.47390 5.55069 5.60194 5.70505 5.83732 5.84507 5.93344 6.00773 6.18410 6.24087 6.47046 6.53095 6.75373 6.97733 7.09378 7.35014 7.42613 7.85619 8.16405 8.22535 8.31231 8.79247 8.94201 9.50484 10.98040 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.006365 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.726523 B = 4398.263897 C = 5537.640786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.152 4.152 4 C 0.112 3.888 5 N -0.587 5.587 6 C 0.247 3.753 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.497 3.503 16 O -0.529 6.529 17 C 0.107 3.893 18 H 0.101 0.899 19 C -0.125 4.125 20 C -0.155 4.155 21 C 0.521 3.479 22 O -0.541 6.541 23 N -0.705 5.705 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.783 9.148 4.877 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 C -0.209 4.209 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.281 3.719 16 O -0.406 6.406 17 C -0.002 4.002 18 H 0.118 0.882 19 C -0.163 4.163 20 C -0.195 4.195 21 C 0.308 3.692 22 O -0.418 6.418 23 N -0.360 5.360 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.777 9.375 5.147 15.908 hybrid contribution 0.396 -1.557 0.098 1.610 sum -11.381 7.818 5.245 14.770 Atomic orbital electron populations 1.21761 0.95044 1.01795 1.01411 1.21481 0.95275 0.96739 0.99985 1.22058 1.01834 0.95778 1.01281 1.21638 0.81246 1.00938 0.97428 1.48180 1.05767 1.54220 1.23654 1.19296 0.92472 0.92307 0.83121 1.21397 1.37024 0.94470 1.03670 0.92517 1.24918 0.95296 0.98866 0.94936 1.69922 1.38637 1.36175 1.08567 0.86513 0.77710 0.84716 0.78584 1.20621 1.21082 1.19940 1.20277 0.88167 0.80124 0.83359 1.90723 1.13634 1.59869 1.76328 1.21725 0.93189 0.98084 0.87213 0.88175 1.22906 1.03674 0.91994 0.97707 1.22376 1.00029 1.00744 0.96358 1.20855 0.82823 0.82140 0.83412 1.90738 1.50642 1.71390 1.29055 1.46014 1.42460 1.15273 1.32259 0.92971 0.92703 0.92530 0.89771 0.92231 0.93056 0.92500 0.91011 0.91226 0.94494 0.94023 0.92679 0.89132 0.87899 0.87800 0.87586 0.74401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.19 37.15 0.34 -1.01 16 2 C -0.12 -1.44 2.82 -90.62 -0.26 -1.69 16 3 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 4 C 0.11 1.54 5.07 -4.05 -0.02 1.52 16 5 N -0.59 -11.00 1.92 -175.06 -0.34 -11.33 16 6 C 0.25 6.01 5.02 -5.19 -0.03 5.98 16 7 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 11 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.50 9.30 6.87 -10.99 -0.08 9.23 16 16 O -0.53 -12.61 16.12 5.56 0.09 -12.52 16 17 C 0.11 1.42 2.94 -68.16 -0.20 1.22 16 18 H 0.10 1.08 6.73 -51.93 -0.35 0.73 16 19 C -0.12 -1.26 4.83 -25.10 -0.12 -1.38 16 20 C -0.15 -1.52 6.86 -26.74 -0.18 -1.70 16 21 C 0.52 7.58 8.44 -10.79 -0.09 7.49 16 22 O -0.54 -9.90 18.03 5.56 0.10 -9.80 16 23 N -0.70 -10.26 5.47 -53.85 -0.29 -10.55 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.29 6.63 -51.93 -0.34 0.94 16 28 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.50 4.90 -51.93 -0.25 0.25 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.72 4.85 -51.93 -0.25 0.47 16 33 H 0.04 0.91 6.40 -51.93 -0.33 0.57 16 34 H 0.04 1.17 7.46 -51.93 -0.39 0.78 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.09 1.03 7.63 -51.93 -0.40 0.64 16 37 H 0.10 0.74 5.51 -51.93 -0.29 0.46 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.42 6.33 8.93 -40.82 -0.36 5.96 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -34.00 320.51 -6.52 -40.52 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.87 Total: 2.37 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.75 Total: 5.22 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.10 Total: -47.03 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.19 Total: -22.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.00 -6.52 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700864827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.881 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds