Wall clock time and date at job start Mon Mar 30 2020 00:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53001 * 109.47626 * 120.00222 * 2 1 3 5 5 N 1.46490 * 109.47482 * 179.44085 * 4 2 1 6 6 C 1.46503 * 120.00214 * 300.28660 * 5 4 2 7 7 C 1.50708 * 109.46799 * 270.00038 * 6 5 4 8 8 H 1.07996 * 120.00291 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99614 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00463 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99883 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47462 * 89.99871 * 11 9 7 13 13 H 1.48500 * 109.47085 * 210.00048 * 11 9 7 14 14 H 1.48502 * 109.46713 * 329.99875 * 11 9 7 15 15 C 1.34781 * 120.00084 * 120.28602 * 5 4 2 16 16 O 1.21281 * 119.99895 * 177.29306 * 15 5 4 17 17 C 1.50694 * 119.99757 * 357.01185 * 15 5 4 18 18 H 1.08999 * 110.21596 * 43.41865 * 17 15 5 19 19 C 1.54486 * 110.24468 * 281.48870 * 17 15 5 20 20 C 1.54626 * 101.76166 * 215.58520 * 19 17 15 21 21 C 1.51282 * 104.20118 * 24.80115 * 20 19 17 22 22 O 1.21275 * 124.94659 * 163.77608 * 21 20 19 23 23 N 1.34568 * 110.13367 * 343.67237 * 21 20 19 24 24 H 1.08997 * 109.47479 * 299.99514 * 1 2 3 25 25 H 1.09000 * 109.47493 * 60.00130 * 1 2 3 26 26 H 1.09006 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47037 * 240.00559 * 2 1 3 28 28 H 1.09001 * 109.47406 * 183.36574 * 3 2 1 29 29 H 1.08993 * 109.47508 * 303.37239 * 3 2 1 30 30 H 1.09006 * 109.46891 * 63.37320 * 3 2 1 31 31 H 1.09005 * 109.46758 * 59.43744 * 4 2 1 32 32 H 1.09005 * 109.46989 * 299.44569 * 4 2 1 33 33 H 1.09006 * 109.46843 * 29.99617 * 6 5 4 34 34 H 1.08991 * 109.47481 * 150.00017 * 6 5 4 35 35 H 0.96996 * 120.00005 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.97090 * 333.70318 * 19 17 15 37 37 H 1.09002 * 110.96647 * 97.43416 * 19 17 15 38 38 H 1.09004 * 110.48771 * 143.47839 * 20 19 17 39 39 H 1.09001 * 110.48854 * 265.98374 * 20 19 17 40 40 H 0.97006 * 124.43166 * 179.64275 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5049 -0.7329 1.2424 6 6 4.2273 -1.3711 0.1392 7 6 4.4685 -2.8217 0.4692 8 1 4.1182 -3.2277 1.4067 9 6 5.1353 -3.6307 -0.4262 10 7 5.5604 -3.1368 -1.5685 11 14 5.4335 -5.4290 -0.0175 12 1 4.2944 -6.2442 -0.5103 13 1 6.6870 -5.8838 -0.6710 14 1 5.5564 -5.5883 1.4538 15 6 4.1881 -0.1565 2.2512 16 8 5.3996 -0.2089 2.2708 17 6 3.4469 0.5585 3.3513 18 1 2.5810 -0.0254 3.6633 19 6 3.0033 1.9593 2.8743 20 6 3.1568 2.7953 4.1659 21 6 4.1925 2.0442 4.9733 22 8 4.8020 2.5003 5.9174 23 7 4.3378 0.7956 4.4932 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1283 1.4432 -0.0603 29 1 1.6281 1.9735 -0.8581 30 1 1.7267 1.9386 0.9187 31 1 1.6685 -1.7460 1.2542 32 1 1.6849 -0.2017 2.1392 33 1 3.6345 -1.2997 -0.7728 34 1 5.1830 -0.8684 -0.0083 35 1 6.0292 -3.7061 -2.1986 36 1 3.6616 2.3305 2.0888 37 1 1.9665 1.9467 2.5380 38 1 3.5109 3.7991 3.9309 39 1 2.2105 2.8422 4.7048 40 1 4.9523 0.1373 4.8538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700864827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:11 Heat of formation + Delta-G solvation = -102.450574 kcal Electronic energy + Delta-G solvation = -21631.732890 eV Core-core repulsion = 18445.160709 eV Total energy + Delta-G solvation = -3186.572181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89514 -40.21247 -37.86987 -37.25269 -35.32315 -34.13819 -32.30241 -30.53192 -28.60740 -27.88499 -26.87144 -25.01838 -23.33941 -21.53134 -21.10747 -20.24444 -18.70151 -18.45261 -18.24315 -17.13445 -16.80505 -16.41944 -16.10880 -15.62772 -15.32996 -14.82763 -14.76443 -14.59512 -14.33301 -14.12752 -13.85306 -13.47513 -13.24425 -12.92952 -12.88130 -12.74930 -12.56237 -12.50229 -12.23284 -12.12000 -12.06971 -11.74366 -11.59871 -11.31382 -11.00593 -10.87897 -10.63323 -10.04474 -9.40904 -8.23185 -6.37074 1.34555 1.37524 1.46764 1.49717 1.68593 2.10626 2.35500 2.52926 3.06788 3.31817 3.38579 3.66945 3.86035 3.99643 4.11105 4.17933 4.36777 4.48164 4.59972 4.70466 4.81740 4.88400 4.95795 5.03466 5.04649 5.08543 5.17691 5.21429 5.25215 5.42035 5.50892 5.60543 5.62990 5.66376 5.83584 5.98174 6.06667 6.68859 6.77214 7.13513 7.26975 7.42948 8.83562 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.006365 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.726523 B = 4398.263897 C = 5537.640786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.265 3.735 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.262 1.262 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.488 3.512 16 O -0.594 6.594 17 C 0.117 3.883 18 H 0.140 0.860 19 C -0.118 4.118 20 C -0.138 4.138 21 C 0.511 3.489 22 O -0.587 6.587 23 N -0.714 5.714 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.029 0.971 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 9.846 6.026 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.205 4.205 4 C -0.017 4.017 5 N -0.316 5.316 6 C 0.144 3.856 7 C -0.579 4.579 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.788 3.212 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.275 3.725 16 O -0.475 6.475 17 C 0.008 3.992 18 H 0.157 0.843 19 C -0.156 4.156 20 C -0.177 4.177 21 C 0.299 3.701 22 O -0.468 6.468 23 N -0.367 5.367 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.047 0.953 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.165 0.835 38 H 0.136 0.864 39 H 0.165 0.835 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.309 10.080 6.282 19.376 hybrid contribution 1.504 -1.771 -0.291 2.341 sum -13.805 8.309 5.991 17.190 Atomic orbital electron populations 1.21716 0.91931 1.02269 1.03358 1.21435 0.97704 0.96786 0.97369 1.22039 0.99505 0.95336 1.03633 1.22026 0.77784 1.01607 1.00312 1.48104 1.07885 1.53415 1.22232 1.18658 0.90820 0.91063 0.85061 1.21723 1.36951 0.95879 1.03394 0.92899 1.25806 0.95032 1.03418 0.94808 1.70044 1.39392 1.37813 1.09560 0.85483 0.78048 0.79535 0.78156 1.18720 1.20927 1.19930 1.21348 0.87765 0.79333 0.84014 1.90689 1.16747 1.62185 1.77850 1.21896 0.92779 0.99895 0.84621 0.84258 1.23050 1.05672 0.89322 0.97546 1.22438 1.00001 1.00229 0.95075 1.21772 0.83158 0.82071 0.83062 1.90710 1.52670 1.72113 1.31337 1.46260 1.42498 1.15510 1.32389 0.89735 0.92044 0.92873 0.93989 0.95778 0.91989 0.88990 0.91835 0.86393 0.95273 0.99058 0.92509 0.90717 0.83488 0.86436 0.83505 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 2 C -0.11 -2.62 2.82 -10.79 -0.03 -2.65 16 3 C -0.15 -2.99 8.11 71.98 0.58 -2.41 16 4 C 0.10 2.66 5.07 86.38 0.44 3.10 16 5 N -0.59 -22.23 1.92 -826.15 -1.59 -23.82 16 6 C 0.27 13.66 5.02 85.64 0.43 14.09 16 7 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.47 5.46 84.65 0.46 0.94 16 10 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.49 18.42 6.87 87.65 0.60 19.02 16 16 O -0.59 -29.82 16.12 -3.03 -0.05 -29.87 16 17 C 0.12 2.78 2.94 44.70 0.13 2.91 16 18 H 0.14 2.29 6.73 -2.39 -0.02 2.28 16 19 C -0.12 -1.87 4.83 31.65 0.15 -1.72 16 20 C -0.14 -2.08 6.86 30.59 0.21 -1.87 16 21 C 0.51 13.97 8.44 87.87 0.74 14.71 16 22 O -0.59 -21.29 18.03 -3.01 -0.05 -21.35 16 23 N -0.71 -20.05 5.47 -442.78 -2.42 -22.47 16 24 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.04 1.32 6.63 -2.39 -0.02 1.30 16 28 H 0.02 0.65 7.68 -2.39 -0.02 0.63 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.14 4.90 -2.38 -0.01 1.13 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.12 1.83 4.85 -2.38 -0.01 1.82 16 33 H 0.03 1.53 6.40 -2.38 -0.02 1.52 16 34 H -0.01 -0.53 7.46 -2.39 -0.02 -0.55 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.07 1.50 7.63 -2.39 -0.02 1.48 16 37 H 0.15 1.03 5.51 -2.39 -0.01 1.02 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.41 12.60 8.93 -92.70 -0.83 11.78 16 Total: -1.00 -82.05 320.51 3.04 -79.00 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.23 Total: 12.72 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.62 Total: 14.54 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.73 Total: -101.70 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.10 Total: -51.22 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -82.05 3.04 -79.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700864827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.448 kcal (2) G-P(sol) polarization free energy of solvation -82.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds