Wall clock time and date at job start Mon Mar 30 2020 00:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46646 * 119.99824 * 2 1 3 5 5 N 1.46500 * 109.46998 * 175.00104 * 4 2 1 6 6 C 1.46762 * 124.34857 * 89.99876 * 5 4 2 7 7 C 1.54487 * 105.47159 * 197.01676 * 6 5 4 8 8 H 1.09003 * 110.96809 * 92.70778 * 7 6 5 9 9 C 1.50695 * 110.96723 * 216.42806 * 7 6 5 10 10 O 1.21277 * 120.00304 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99789 * 180.02562 * 9 7 6 12 12 C 1.46502 * 120.00165 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47340 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00073 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99828 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46963 * 89.99955 * 17 15 13 19 19 H 1.48502 * 109.47112 * 209.99836 * 17 15 13 20 20 H 1.48496 * 109.47129 * 329.99930 * 17 15 13 21 21 C 1.54622 * 101.76661 * 334.58544 * 7 6 5 22 22 C 1.34424 * 124.34955 * 269.70785 * 5 4 2 23 23 O 1.21283 * 124.94297 * 359.56441 * 22 5 4 24 24 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 25 25 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 26 26 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 28 28 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 30 30 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 31 31 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 32 32 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 33 33 H 1.09001 * 110.24891 * 316.01611 * 6 5 4 34 34 H 1.08996 * 110.24532 * 77.93735 * 6 5 4 35 35 H 0.97004 * 120.00477 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46723 * 299.99909 * 12 11 9 37 37 H 1.09001 * 109.47235 * 59.99582 * 12 11 9 38 38 H 0.97006 * 119.99970 * 180.02562 * 16 15 13 39 39 H 1.09003 * 110.48734 * 143.47416 * 21 7 6 40 40 H 1.08993 * 110.49175 * 266.11841 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 3.4999 -0.8264 1.1908 6 6 4.4247 0.1771 1.7307 7 6 5.7894 -0.1234 1.0719 8 1 5.9215 0.4638 0.1630 9 6 6.9200 0.1213 2.0377 10 8 6.6834 0.5034 3.1641 11 7 8.1942 -0.0846 1.6497 12 6 9.2933 0.1527 2.5888 13 6 10.6059 -0.1488 1.9124 14 1 10.6199 -0.4840 0.8859 15 6 11.7888 0.0034 2.6041 16 7 12.9341 -0.2602 2.0141 17 14 11.7645 0.5840 4.3795 18 1 11.6756 -0.5910 5.2833 19 1 13.0097 1.3391 4.6704 20 1 10.5891 1.4652 4.5961 21 6 5.6566 -1.6285 0.7439 22 6 4.1647 -1.8571 0.6406 23 8 3.6441 -2.8279 0.1330 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.7514 -0.1583 2.1370 32 1 1.6052 -1.7198 1.2952 33 1 4.0903 1.1800 1.4650 34 1 4.4976 0.0789 2.8137 35 1 8.3836 -0.3898 0.7486 36 1 9.2802 1.1950 2.9075 37 1 9.1749 -0.4945 3.4578 38 1 13.7664 -0.1535 2.5009 39 1 6.1468 -1.8575 -0.2024 40 1 6.0764 -2.2327 1.5480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701252733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:41 Heat of formation + Delta-G solvation = -86.815472 kcal Electronic energy + Delta-G solvation = -20585.662396 eV Core-core repulsion = 17399.768204 eV Total energy + Delta-G solvation = -3185.894192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85545 -38.89600 -36.88874 -35.63357 -34.43741 -32.55658 -31.91174 -28.27660 -27.99206 -27.20138 -26.38515 -23.41828 -21.66332 -20.89020 -19.82180 -19.36879 -17.69621 -17.03093 -16.58773 -15.91675 -15.38966 -15.18707 -14.94809 -14.66526 -14.28061 -14.01619 -13.71457 -13.42311 -13.18639 -13.00614 -12.81667 -12.55588 -12.42510 -12.16590 -12.06128 -11.66058 -11.48593 -11.36457 -11.13101 -11.03919 -10.96067 -10.81983 -10.04159 -9.96286 -9.56007 -9.35545 -8.84174 -8.78101 -8.28553 -6.26288 -4.29354 2.50209 2.82538 2.99264 3.22874 3.29884 3.36845 3.72056 4.22553 4.28487 4.35808 4.56827 4.60129 4.77050 4.84108 4.89350 5.08935 5.15535 5.28073 5.29987 5.34896 5.38351 5.45146 5.54734 5.58836 5.65038 5.69945 5.81252 5.87064 5.99839 6.02485 6.41824 6.70916 6.98192 6.98508 7.08136 7.30672 8.02510 8.08094 8.40528 8.65770 8.78306 9.33018 10.85571 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038647 B = 0.003641 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.333557 B = 7687.341187 C = 7977.361572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.151 4.151 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.112 3.888 7 C -0.124 4.124 8 H 0.114 0.886 9 C 0.512 3.488 10 O -0.553 6.553 11 N -0.699 5.699 12 C 0.220 3.780 13 C -0.546 4.546 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 C -0.144 4.144 22 C 0.521 3.479 23 O -0.534 6.534 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.399 0.601 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.111 0.889 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.150 2.268 -3.639 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 C -0.208 4.208 4 C 0.008 3.992 5 N -0.350 5.350 6 C -0.010 4.010 7 C -0.146 4.146 8 H 0.132 0.868 9 C 0.295 3.705 10 O -0.432 6.432 11 N -0.346 5.346 12 C 0.098 3.902 13 C -0.584 4.584 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.185 4.185 22 C 0.309 3.691 23 O -0.411 6.411 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.232 0.768 36 H 0.045 0.955 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.421 2.037 -3.053 21.733 hybrid contribution 0.375 0.229 0.430 0.615 sum -21.046 2.266 -2.623 21.329 Atomic orbital electron populations 1.21767 0.94502 1.01971 1.01999 1.21545 0.96007 0.96876 0.98994 1.21959 1.01567 0.95493 1.01804 1.21470 0.78150 1.01622 0.97914 1.48298 1.06194 1.22037 1.58501 1.22130 0.86495 0.92370 1.00039 1.22244 0.94568 0.97569 1.00226 0.86806 1.19955 0.84044 0.78524 0.87929 1.90665 1.84226 1.47554 1.20795 1.46176 1.05580 1.65580 1.17275 1.19540 0.84682 0.96639 0.89382 1.21073 0.88588 1.47706 1.01005 0.90173 1.24797 0.95126 0.94243 0.98425 1.69878 0.97729 1.47738 1.37444 0.86820 0.78216 0.79791 0.84868 1.19827 1.20877 1.18506 1.22337 0.94627 0.95661 1.05859 1.20825 0.89640 0.81854 0.76752 1.90714 1.74422 1.30708 1.45293 0.92498 0.92382 0.92479 0.90779 0.92103 0.92670 0.92565 0.90234 0.89996 0.89558 0.88893 0.76757 0.95530 0.96009 0.92192 0.87038 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.19 37.16 0.34 -0.64 16 2 C -0.11 -0.96 3.13 -90.62 -0.28 -1.24 16 3 C -0.15 -1.15 8.58 37.16 0.32 -0.84 16 4 C 0.13 1.22 5.36 -4.04 -0.02 1.20 16 5 N -0.62 -6.91 2.71 -172.41 -0.47 -7.38 16 6 C 0.11 1.24 6.14 -3.12 -0.02 1.22 16 7 C -0.12 -1.46 3.54 -90.14 -0.32 -1.78 16 8 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 9 C 0.51 8.55 7.06 -10.99 -0.08 8.47 16 10 O -0.55 -11.20 15.51 5.56 0.09 -11.12 16 11 N -0.70 -12.86 5.55 -61.47 -0.34 -13.20 16 12 C 0.22 5.10 4.50 -5.19 -0.02 5.08 16 13 C -0.55 -14.42 9.83 -34.44 -0.34 -14.76 16 14 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 17 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 21 C -0.14 -1.70 6.41 -26.74 -0.17 -1.87 16 22 C 0.52 6.99 8.02 -10.85 -0.09 6.91 16 23 O -0.53 -8.95 17.59 5.55 0.10 -8.85 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.50 5.65 -51.93 -0.29 0.21 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 33 H 0.09 0.81 5.89 -51.93 -0.31 0.50 16 34 H 0.09 1.18 6.97 -51.93 -0.36 0.82 16 35 H 0.40 6.41 8.32 -40.82 -0.34 6.07 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 37 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 38 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.11 1.39 7.89 -51.93 -0.41 0.98 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -32.29 327.59 -6.63 -38.92 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.27 Total: 1.86 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.78 Total: 3.81 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.03 Total: -45.73 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.18 Total: -19.97 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.29 -6.63 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701252733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.895 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds