Wall clock time and date at job start Mon Mar 30 2020 00:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 C 1.53006 * 109.46646 * 119.99824 * 2 1 3 5 5 N 1.46500 * 109.46998 * 175.00104 * 4 2 1 6 6 C 1.46762 * 124.34857 * 89.99876 * 5 4 2 7 7 C 1.54487 * 105.47159 * 197.01676 * 6 5 4 8 8 H 1.09003 * 110.96809 * 92.70778 * 7 6 5 9 9 C 1.50695 * 110.96723 * 216.42806 * 7 6 5 10 10 O 1.21277 * 120.00304 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99789 * 180.02562 * 9 7 6 12 12 C 1.46502 * 120.00165 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47340 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00073 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99828 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00070 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46963 * 89.99955 * 17 15 13 19 19 H 1.48502 * 109.47112 * 209.99836 * 17 15 13 20 20 H 1.48496 * 109.47129 * 329.99930 * 17 15 13 21 21 C 1.54622 * 101.76661 * 334.58544 * 7 6 5 22 22 C 1.34424 * 124.34955 * 269.70785 * 5 4 2 23 23 O 1.21283 * 124.94297 * 359.56441 * 22 5 4 24 24 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 25 25 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 26 26 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 28 28 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 30 30 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 31 31 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 32 32 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 33 33 H 1.09001 * 110.24891 * 316.01611 * 6 5 4 34 34 H 1.08996 * 110.24532 * 77.93735 * 6 5 4 35 35 H 0.97004 * 120.00477 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.46723 * 299.99909 * 12 11 9 37 37 H 1.09001 * 109.47235 * 59.99582 * 12 11 9 38 38 H 0.97006 * 119.99970 * 180.02562 * 16 15 13 39 39 H 1.09003 * 110.48734 * 143.47416 * 21 7 6 40 40 H 1.08993 * 110.49175 * 266.11841 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 3.4999 -0.8264 1.1908 6 6 4.4247 0.1771 1.7307 7 6 5.7894 -0.1234 1.0719 8 1 5.9215 0.4638 0.1630 9 6 6.9200 0.1213 2.0377 10 8 6.6834 0.5034 3.1641 11 7 8.1942 -0.0846 1.6497 12 6 9.2933 0.1527 2.5888 13 6 10.6059 -0.1488 1.9124 14 1 10.6199 -0.4840 0.8859 15 6 11.7888 0.0034 2.6041 16 7 12.9341 -0.2602 2.0141 17 14 11.7645 0.5840 4.3795 18 1 11.6756 -0.5910 5.2833 19 1 13.0097 1.3391 4.6704 20 1 10.5891 1.4652 4.5961 21 6 5.6566 -1.6285 0.7439 22 6 4.1647 -1.8571 0.6406 23 8 3.6441 -2.8279 0.1330 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.7514 -0.1583 2.1370 32 1 1.6052 -1.7198 1.2952 33 1 4.0903 1.1800 1.4650 34 1 4.4976 0.0789 2.8137 35 1 8.3836 -0.3898 0.7486 36 1 9.2802 1.1950 2.9075 37 1 9.1749 -0.4945 3.4578 38 1 13.7664 -0.1535 2.5009 39 1 6.1468 -1.8575 -0.2024 40 1 6.0764 -2.2327 1.5480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701252733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:40 Heat of formation + Delta-G solvation = -109.210453 kcal Electronic energy + Delta-G solvation = -20586.633515 eV Core-core repulsion = 17399.768204 eV Total energy + Delta-G solvation = -3186.865311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91635 -40.25198 -37.82710 -36.58463 -36.12124 -34.42307 -32.96317 -30.01678 -28.89557 -27.91798 -27.28803 -24.84234 -23.22249 -21.68082 -21.19882 -20.29896 -19.21694 -18.19065 -17.95017 -17.09800 -16.87828 -16.41516 -16.17876 -15.79029 -15.56318 -15.11672 -14.83021 -14.62465 -14.56269 -14.24673 -13.81777 -13.79502 -13.69069 -13.09722 -13.06331 -12.75199 -12.70230 -12.48508 -12.40838 -12.14931 -11.91189 -11.76408 -11.64076 -11.62625 -11.12817 -10.90072 -10.72159 -9.93547 -9.71113 -8.37716 -6.44722 1.35037 1.37775 1.45612 1.49057 1.63516 1.90977 2.29762 2.40541 2.98171 3.20995 3.37376 3.80890 3.83098 3.92387 3.96064 4.14983 4.21664 4.46566 4.49032 4.58632 4.63283 4.75856 4.79806 4.83765 4.84287 4.93051 5.02369 5.04546 5.06531 5.24869 5.28823 5.33700 5.43072 5.51183 5.58204 6.02169 6.09360 6.57202 6.81907 7.06262 7.16911 7.37153 8.76998 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038647 B = 0.003641 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.333557 B = 7687.341187 C = 7977.361572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.608 5.608 6 C 0.116 3.884 7 C -0.108 4.108 8 H 0.148 0.852 9 C 0.516 3.484 10 O -0.586 6.586 11 N -0.700 5.700 12 C 0.230 3.770 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.025 3.975 16 N -0.933 5.933 17 Si 0.937 3.063 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.255 1.255 21 C -0.140 4.140 22 C 0.517 3.483 23 O -0.574 6.574 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.679 3.456 -3.357 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.003 3.997 5 N -0.340 5.340 6 C -0.006 4.006 7 C -0.130 4.130 8 H 0.165 0.835 9 C 0.302 3.698 10 O -0.467 6.467 11 N -0.348 5.348 12 C 0.107 3.893 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.175 4.175 16 N -0.572 5.572 17 Si 0.761 3.239 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.179 1.179 21 C -0.181 4.181 22 C 0.305 3.695 23 O -0.454 6.454 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.982 3.243 -2.783 23.376 hybrid contribution 0.798 -0.155 0.305 0.868 sum -22.184 3.088 -2.478 22.535 Atomic orbital electron populations 1.21745 0.93231 1.02050 1.02907 1.21473 0.97038 0.97066 0.97342 1.21949 1.01215 0.94830 1.02654 1.21673 0.76939 1.01611 0.99455 1.48371 1.07050 1.21347 1.57272 1.22142 0.86031 0.93382 0.99092 1.22176 0.92682 0.98105 1.00032 0.83469 1.20623 0.84154 0.76878 0.88102 1.90655 1.84684 1.48783 1.22616 1.46002 1.05380 1.66242 1.17218 1.19130 0.84809 0.95694 0.89702 1.21314 0.90109 1.46599 1.00328 0.92194 1.25614 0.94881 0.94558 1.02496 1.69990 0.98495 1.49454 1.39265 0.85863 0.78476 0.79538 0.80044 1.19232 1.20182 1.17948 1.22335 0.93786 0.95358 1.06591 1.21041 0.90292 0.81685 0.76447 1.90695 1.75150 1.32266 1.47266 0.91257 0.91795 0.92871 0.92887 0.92579 0.92120 0.91478 0.88181 0.91119 0.87093 0.90328 0.75360 0.96460 0.96898 0.91944 0.85168 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.11 -1.63 3.13 -10.79 -0.03 -1.67 16 3 C -0.15 -1.87 8.58 71.98 0.62 -1.25 16 4 C 0.12 2.12 5.36 86.38 0.46 2.58 16 5 N -0.61 -12.57 2.71 -817.96 -2.21 -14.78 16 6 C 0.12 2.27 6.14 86.84 0.53 2.81 16 7 C -0.11 -2.28 3.54 -10.48 -0.04 -2.31 16 8 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 9 C 0.52 16.32 7.06 87.66 0.62 16.94 16 10 O -0.59 -22.93 15.51 -3.02 -0.05 -22.98 16 11 N -0.70 -24.84 5.55 -466.78 -2.59 -27.43 16 12 C 0.23 10.53 4.50 85.63 0.38 10.92 16 13 C -0.55 -28.85 9.83 25.60 0.25 -28.60 16 14 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 15 C 0.02 1.36 5.47 84.65 0.46 1.82 16 16 N -0.93 -54.78 13.96 21.45 0.30 -54.48 16 17 Si 0.94 42.67 27.47 68.60 1.88 44.55 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.26 -11.32 6.54 99.48 0.65 -10.67 16 21 C -0.14 -3.06 6.41 30.59 0.20 -2.86 16 22 C 0.52 13.28 8.02 87.90 0.71 13.99 16 23 O -0.57 -19.09 17.59 -3.04 -0.05 -19.14 16 24 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.75 5.65 -2.39 -0.01 0.74 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.39 7.92 -2.39 -0.02 1.37 16 33 H 0.11 1.69 5.89 -2.39 -0.01 1.67 16 34 H 0.08 1.85 6.97 -2.39 -0.02 1.83 16 35 H 0.41 12.61 8.32 -92.70 -0.77 11.84 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 37 H 0.01 0.62 7.57 -2.39 -0.02 0.61 16 38 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 2.45 7.89 -2.39 -0.02 2.43 16 Total: -1.00 -69.68 327.59 2.31 -67.37 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.21 Total: 15.51 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 4.82 Total: 11.38 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.51 Total: -96.69 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.10 Total: -42.12 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Total: -69.68 2.31 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701252733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.844 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds