Wall clock time and date at job start Mon Mar 30 2020 00:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34425 * 124.34592 * 2 1 4 4 O 1.21280 * 124.94392 * 0.38930 * 3 2 1 5 5 C 1.51288 * 110.11357 * 180.40770 * 3 2 1 6 6 C 1.54631 * 104.19528 * 16.25490 * 5 3 2 7 7 C 1.46765 * 124.35294 * 179.70280 * 2 1 3 8 8 H 1.09002 * 110.24161 * 281.98194 * 7 2 1 9 9 C 1.50696 * 110.24534 * 43.98356 * 7 2 1 10 10 O 1.21283 * 120.00237 * 18.54381 * 9 7 2 11 11 N 1.34780 * 119.99897 * 198.55135 * 9 7 2 12 12 C 1.46502 * 119.99653 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46869 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47107 * 300.00170 * 13 12 11 15 15 C 1.52993 * 109.47129 * 60.00035 * 13 12 11 16 16 C 1.50696 * 109.47112 * 180.02562 * 13 12 11 17 17 H 1.07998 * 120.00133 * 0.02562 * 16 13 12 18 18 C 1.37881 * 119.99948 * 179.97438 * 16 13 12 19 19 N 1.31507 * 119.99994 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00082 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.46997 * 89.99836 * 20 18 16 22 22 H 1.48497 * 109.47513 * 210.00177 * 20 18 16 23 23 H 1.48505 * 109.47105 * 330.00143 * 20 18 16 24 24 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46813 * 240.02361 * 1 2 3 26 26 H 1.09004 * 109.47041 * 120.02488 * 1 2 3 27 27 H 1.08996 * 110.48510 * 134.93241 * 5 3 2 28 28 H 1.08998 * 110.48581 * 257.44438 * 5 3 2 29 29 H 1.08990 * 110.96857 * 93.32047 * 6 5 3 30 30 H 1.08999 * 110.96953 * 217.04780 * 6 5 3 31 31 H 0.96992 * 120.00340 * 359.97438 * 11 9 7 32 32 H 1.08990 * 109.47415 * 300.00078 * 12 11 9 33 33 H 1.09003 * 109.47058 * 60.00541 * 12 11 9 34 34 H 1.09008 * 109.46869 * 60.00036 * 14 13 12 35 35 H 1.09000 * 109.47252 * 179.97438 * 14 13 12 36 36 H 1.08995 * 109.47359 * 300.00284 * 14 13 12 37 37 H 1.09003 * 109.46940 * 60.00108 * 15 13 12 38 38 H 1.09001 * 109.47620 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.47570 * 299.99856 * 15 13 12 40 40 H 0.97001 * 120.00369 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7945 2.2443 0.0068 5 6 3.6898 0.7379 -0.0101 6 6 3.7011 -0.7486 -0.4358 7 6 2.2932 -1.2116 0.0063 8 1 2.3307 -1.6376 1.0089 9 6 1.7475 -2.2213 -0.9703 10 8 0.9876 -1.8678 -1.8470 11 7 2.1040 -3.5172 -0.8696 12 6 1.5731 -4.4988 -1.8187 13 6 2.1310 -5.8839 -1.4854 14 6 3.6578 -5.8554 -1.5816 15 6 1.7167 -6.2723 -0.0648 16 6 1.5854 -6.8936 -2.4621 17 1 0.9088 -6.5788 -3.2427 18 6 1.9510 -8.2191 -2.3597 19 7 2.7761 -8.6022 -1.4100 20 14 1.2741 -9.4708 -3.5699 21 1 2.1822 -9.5683 -4.7409 22 1 1.1759 -10.7965 -2.9080 23 1 -0.0737 -9.0426 -4.0229 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5135 0.8902 26 1 -0.3633 -0.5142 -0.8898 27 1 4.2326 1.3461 -0.7337 28 1 4.1200 0.8553 0.9845 29 1 3.8269 -0.8446 -1.5141 30 1 4.4759 -1.3008 0.0961 31 1 2.7119 -3.7999 -0.1687 32 1 0.4855 -4.5188 -1.7505 33 1 1.8687 -4.2224 -2.8308 34 1 4.0527 -5.1250 -0.8753 35 1 4.0553 -6.8421 -1.3437 36 1 3.9530 -5.5787 -2.5936 37 1 0.6290 -6.2926 0.0037 38 1 2.1145 -7.2589 0.1729 39 1 2.1117 -5.5420 0.6415 40 1 3.0330 -9.5347 -1.3377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822398999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:47 Heat of formation + Delta-G solvation = -94.283587 kcal Electronic energy + Delta-G solvation = -21129.787169 eV Core-core repulsion = 17943.569136 eV Total energy + Delta-G solvation = -3186.218034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92161 -40.24192 -38.21400 -37.16912 -35.06965 -33.73803 -32.71207 -29.60498 -27.62999 -27.50872 -27.37467 -26.43374 -23.50881 -21.77777 -20.70259 -20.37007 -18.82044 -17.82213 -17.74549 -17.15979 -16.67549 -16.51285 -16.25400 -15.70520 -14.96014 -14.80567 -14.78785 -14.62502 -14.42107 -13.97355 -13.63814 -13.43697 -13.20379 -13.08454 -13.01855 -12.79127 -12.62735 -12.58653 -12.21032 -12.12368 -12.03220 -11.44351 -11.28150 -11.07734 -10.88441 -10.66957 -10.37610 -9.98202 -9.70586 -8.01048 -6.16034 1.42536 1.43467 1.46669 1.53642 1.54685 1.90431 2.34398 2.50324 3.22980 3.29979 3.44436 3.77259 4.00769 4.10245 4.32795 4.40819 4.46841 4.54246 4.62125 4.76279 4.83380 4.86147 4.99368 5.03899 5.06408 5.11041 5.14565 5.24478 5.33838 5.39398 5.61086 5.69904 5.72372 6.02334 6.21002 6.25877 6.46538 6.64622 6.88419 7.04707 7.29134 7.51762 8.97299 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042222 B = 0.003994 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.996690 B = 7008.681992 C = 7269.967955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.605 5.605 3 C 0.505 3.495 4 O -0.584 6.584 5 C -0.139 4.139 6 C -0.113 4.113 7 C 0.114 3.886 8 H 0.142 0.858 9 C 0.498 3.502 10 O -0.582 6.582 11 N -0.700 5.700 12 C 0.150 3.850 13 C 0.050 3.950 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.529 4.529 17 H 0.041 0.959 18 C 0.031 3.969 19 N -0.896 5.896 20 Si 0.939 3.061 21 H -0.280 1.280 22 H -0.283 1.283 23 H -0.278 1.278 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.413 0.587 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 11.436 7.579 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.338 5.338 3 C 0.295 3.705 4 O -0.464 6.464 5 C -0.179 4.179 6 C -0.150 4.150 7 C 0.007 3.993 8 H 0.160 0.840 9 C 0.284 3.716 10 O -0.462 6.462 11 N -0.352 5.352 12 C 0.026 3.974 13 C 0.050 3.950 14 C -0.178 4.178 15 C -0.179 4.179 16 C -0.568 4.568 17 H 0.059 0.941 18 C -0.169 4.169 19 N -0.535 5.535 20 Si 0.767 3.233 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.203 1.203 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.251 0.749 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.196 12.066 7.030 14.581 hybrid contribution -0.706 -1.174 -0.817 1.595 sum 3.490 10.891 6.212 13.015 Atomic orbital electron populations 1.21687 0.78177 1.03062 1.02673 1.48044 1.06949 1.06683 1.72115 1.21745 0.91391 0.83464 0.73872 1.90682 1.79973 1.22645 1.53127 1.22407 0.91210 0.97134 1.07141 1.22753 0.93404 0.95463 1.03426 1.21980 0.92403 0.84606 1.00301 0.84046 1.21243 0.81050 0.83625 0.85674 1.90672 1.37766 1.80210 1.37533 1.46054 1.48514 1.06707 1.33886 1.21243 0.96548 0.88627 0.91002 1.18369 0.93479 0.89129 0.94061 1.21667 0.96873 1.01381 0.97911 1.21669 0.97977 1.01852 0.96360 1.21281 1.27982 0.93370 1.14148 0.94055 1.25378 0.95265 0.99510 0.96724 1.69888 1.34285 1.16699 1.32622 0.85850 0.78703 0.79072 0.79698 1.20585 1.20894 1.20314 0.90810 0.90359 0.92140 0.86727 0.84146 0.90591 0.83806 0.74865 0.94551 0.94410 0.93598 0.92122 0.96411 0.96549 0.92083 0.93801 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.18 10.49 127.77 1.34 3.53 16 2 N -0.61 -14.75 3.00 -822.70 -2.47 -17.22 16 3 C 0.51 12.71 8.02 87.90 0.71 13.42 16 4 O -0.58 -19.72 17.35 -3.03 -0.05 -19.77 16 5 C -0.14 -1.92 6.86 30.59 0.21 -1.71 16 6 C -0.11 -1.46 6.67 31.72 0.21 -1.25 16 7 C 0.11 2.16 3.72 44.76 0.17 2.33 16 8 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 9 C 0.50 14.14 6.69 87.66 0.59 14.73 16 10 O -0.58 -22.10 14.47 -3.04 -0.04 -22.14 16 11 N -0.70 -20.01 4.96 -463.06 -2.30 -22.31 16 12 C 0.15 5.80 4.50 86.38 0.39 6.18 16 13 C 0.05 2.15 0.50 -52.93 -0.03 2.12 16 14 C -0.12 -4.85 8.08 71.98 0.58 -4.26 16 15 C -0.12 -4.91 8.08 71.98 0.58 -4.33 16 16 C -0.53 -26.86 8.01 25.60 0.21 -26.65 16 17 H 0.04 2.17 7.74 -2.91 -0.02 2.14 16 18 C 0.03 1.59 5.15 84.66 0.44 2.02 16 19 N -0.90 -45.87 9.35 21.45 0.20 -45.66 16 20 Si 0.94 41.47 29.54 68.60 2.03 43.50 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H 0.07 1.93 7.53 -2.39 -0.02 1.91 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.83 6.18 -2.38 -0.01 1.81 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.25 7.92 -2.39 -0.02 1.24 16 30 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.41 9.41 6.16 -92.71 -0.57 8.84 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.44 6.86 -2.38 -0.02 1.42 16 35 H 0.06 2.79 6.07 -2.39 -0.01 2.77 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 2.82 6.07 -2.39 -0.01 2.81 16 39 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 40 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 Total: -1.00 -68.12 319.75 3.22 -64.90 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.47 Total: 12.58 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.39 Total: 6.12 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.57 Total: -85.19 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.10 Total: -41.91 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -68.12 3.22 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822398999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.381 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds