Wall clock time and date at job start Mon Mar 30 2020 00:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53002 * 109.46561 * 119.99448 * 2 1 3 5 5 N 1.46505 * 109.47008 * 174.11299 * 4 2 1 6 6 C 1.46500 * 119.99609 * 276.68803 * 5 4 2 7 7 C 1.50707 * 109.47068 * 269.99331 * 6 5 4 8 8 H 1.07998 * 119.99808 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00011 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99791 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46927 * 60.00326 * 11 9 7 13 13 H 1.48502 * 109.47003 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47520 * 300.00163 * 11 9 7 15 15 C 1.34769 * 120.00336 * 96.68053 * 5 4 2 16 16 O 1.21279 * 120.00120 * 185.40683 * 15 5 4 17 17 C 1.50703 * 120.00068 * 5.41108 * 15 5 4 18 18 C 1.52999 * 109.47093 * 174.69694 * 17 15 5 19 19 H 1.09002 * 112.41810 * 45.33057 * 18 17 15 20 20 C 1.52886 * 113.04867 * 174.81287 * 18 17 15 21 21 C 1.50384 * 82.51234 * 115.45335 * 20 18 17 22 22 O 1.21284 * 131.83711 * 179.97438 * 21 20 18 23 23 N 1.34598 * 96.31714 * 359.96650 * 21 20 18 24 24 H 1.08999 * 109.47270 * 300.00347 * 1 2 3 25 25 H 1.08995 * 109.47049 * 60.00528 * 1 2 3 26 26 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47565 * 239.99191 * 2 1 3 28 28 H 1.09000 * 109.47253 * 64.69854 * 3 2 1 29 29 H 1.09001 * 109.47011 * 184.70807 * 3 2 1 30 30 H 1.09001 * 109.46770 * 304.70214 * 3 2 1 31 31 H 1.08997 * 109.47569 * 54.11111 * 4 2 1 32 32 H 1.09002 * 109.47413 * 294.10518 * 4 2 1 33 33 H 1.08998 * 109.47387 * 29.99756 * 6 5 4 34 34 H 1.09004 * 109.47301 * 149.99984 * 6 5 4 35 35 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46590 * 294.69601 * 17 15 5 37 37 H 1.08995 * 109.46796 * 54.69502 * 17 15 5 38 38 H 1.08996 * 114.37941 * 228.85217 * 20 18 17 39 39 H 1.08995 * 114.37771 * 2.06189 * 20 18 17 40 40 H 0.97000 * 134.66698 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 3.4980 -0.8451 1.1807 6 6 4.1049 -1.9448 0.4267 7 6 4.2994 -3.1305 1.3364 8 1 4.0004 -3.0710 2.3724 9 6 4.8580 -4.2916 0.8457 10 7 5.2216 -4.3643 -0.4161 11 14 5.0984 -5.7614 1.9731 12 1 3.7829 -6.1948 2.5087 13 1 5.7125 -6.8766 1.2085 14 1 5.9902 -5.3819 3.0981 15 6 4.2811 0.0525 1.8111 16 8 5.4853 0.0084 1.6744 17 6 3.6603 1.1109 2.6860 18 6 4.7645 1.9097 3.3815 19 1 5.5670 2.1905 2.6994 20 6 4.2290 3.0891 4.1937 21 6 4.7885 2.2973 5.3434 22 8 4.8148 2.5121 6.5367 23 7 5.2500 1.2707 4.6054 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.7470 1.9315 0.9291 29 1 3.1267 1.4436 -0.0844 30 1 1.6095 1.9800 -0.8449 31 1 1.5930 -1.7138 1.3038 32 1 1.7652 -0.1500 2.1362 33 1 3.4504 -2.2238 -0.3991 34 1 5.0704 -1.6264 0.0335 35 1 5.6150 -5.1810 -0.7612 36 1 3.0579 1.7814 2.0731 37 1 3.0273 0.6369 3.4361 38 1 4.7407 4.0332 4.0070 39 1 3.1427 3.1779 4.1956 40 1 5.7156 0.4432 4.8040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:05 Heat of formation + Delta-G solvation = -55.685093 kcal Electronic energy + Delta-G solvation = -21206.049202 eV Core-core repulsion = 18021.504925 eV Total energy + Delta-G solvation = -3184.544277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04124 -39.16339 -36.66258 -36.21992 -33.74975 -32.35460 -30.71328 -28.66210 -27.32294 -27.06624 -25.56718 -23.42309 -21.77877 -20.29253 -19.79980 -18.41820 -17.33519 -16.68192 -16.43111 -16.30794 -15.93556 -15.11588 -14.91797 -14.50876 -14.14770 -13.58137 -13.44976 -12.99102 -12.75348 -12.58747 -12.39961 -12.22604 -11.95789 -11.79325 -11.60933 -11.44026 -11.25700 -10.98907 -10.92275 -10.80133 -10.57648 -10.47243 -10.18075 -10.02619 -9.68539 -9.18567 -8.96791 -8.48207 -7.70765 -6.09506 -4.14753 2.53884 3.26043 3.27872 3.32617 3.35955 3.44072 3.77703 3.95006 4.38901 4.56741 4.71511 4.97297 5.00995 5.07016 5.22455 5.24621 5.34594 5.42780 5.46077 5.51355 5.63525 5.66178 5.79368 5.90486 5.99386 6.01912 6.12264 6.21209 6.37194 6.39828 6.49656 7.00519 7.06077 7.39703 7.48071 7.86604 8.17871 8.34601 8.36079 8.83105 9.00600 9.50693 10.98350 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.006435 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.109737 B = 4350.028369 C = 5803.477293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.149 4.149 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.247 3.753 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.508 3.492 16 O -0.545 6.545 17 C -0.163 4.163 18 C 0.142 3.858 19 H 0.107 0.893 20 C -0.174 4.174 21 C 0.517 3.483 22 O -0.532 6.532 23 N -0.725 5.725 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 13.268 1.884 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.295 3.705 16 O -0.423 6.423 17 C -0.203 4.203 18 C 0.036 3.964 19 H 0.125 0.875 20 C -0.214 4.214 21 C 0.301 3.699 22 O -0.407 6.407 23 N -0.386 5.386 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.007 13.144 2.310 15.564 hybrid contribution 0.290 -1.547 0.518 1.657 sum -7.718 11.597 2.828 14.215 Atomic orbital electron populations 1.21762 0.94994 1.01894 1.01403 1.21560 0.95448 0.96508 1.00138 1.21976 1.01518 0.96017 1.01085 1.21566 0.81725 1.01171 0.96582 1.48186 1.05280 1.27921 1.51057 1.19252 0.94487 0.82518 0.90998 1.21382 1.41403 0.97355 0.96646 0.92640 1.24920 0.95202 0.98700 0.95151 1.69916 1.41827 1.28006 1.13456 0.86584 0.78435 0.81861 0.80687 1.20254 1.21122 1.20235 1.20144 0.87250 0.82333 0.80778 1.90673 1.14470 1.73605 1.63547 1.22327 0.99085 0.98678 1.00256 1.21882 0.96275 0.89575 0.88661 0.87473 1.23566 1.04163 0.99435 0.94238 1.21874 0.77475 0.82502 0.88005 1.90714 1.59166 1.75302 1.15555 1.47929 1.58801 1.22823 1.09013 0.92856 0.92794 0.92456 0.90391 0.92743 0.92410 0.92845 0.90236 0.91459 0.95077 0.93803 0.92624 0.87121 0.88779 0.86145 0.86275 0.73583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.07 16 2 C -0.12 -1.46 3.11 -90.62 -0.28 -1.74 16 3 C -0.15 -1.61 7.59 37.16 0.28 -1.33 16 4 C 0.11 1.67 4.89 -4.04 -0.02 1.66 16 5 N -0.59 -11.46 2.26 -175.05 -0.40 -11.86 16 6 C 0.25 6.14 5.22 -5.19 -0.03 6.12 16 7 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 11 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.51 9.36 6.45 -10.99 -0.07 9.29 16 16 O -0.54 -12.35 15.29 5.56 0.09 -12.26 16 17 C -0.16 -2.01 3.95 -27.88 -0.11 -2.12 16 18 C 0.14 1.67 3.77 -80.34 -0.30 1.36 16 19 H 0.11 1.33 7.63 -51.93 -0.40 0.93 16 20 C -0.17 -1.55 8.14 -28.09 -0.23 -1.78 16 21 C 0.52 7.06 9.37 -23.49 -0.22 6.84 16 22 O -0.53 -9.37 18.03 5.55 0.10 -9.27 16 23 N -0.73 -9.87 7.45 -76.39 -0.57 -10.44 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 28 H 0.05 0.47 6.49 -51.93 -0.34 0.14 16 29 H 0.06 0.74 6.87 -51.93 -0.36 0.38 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.27 8.12 -51.93 -0.42 0.84 16 32 H 0.07 0.80 6.10 -51.93 -0.32 0.49 16 33 H 0.03 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.04 1.25 7.35 -51.93 -0.38 0.86 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.11 1.05 4.80 -51.93 -0.25 0.81 16 37 H 0.09 1.11 7.37 -51.93 -0.38 0.73 16 38 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 0.79 8.00 -51.93 -0.42 0.38 16 40 H 0.42 5.97 8.96 -40.82 -0.37 5.60 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -33.98 328.16 -7.29 -41.27 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.11 Total: 2.36 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.06 Total: 4.03 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.23 Total: -47.59 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.19 Total: -21.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.98 -7.29 -41.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.419 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds