Wall clock time and date at job start Mon Mar 30 2020 00:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 C 1.53002 * 109.46561 * 119.99448 * 2 1 3 5 5 N 1.46505 * 109.47008 * 174.11299 * 4 2 1 6 6 C 1.46500 * 119.99609 * 276.68803 * 5 4 2 7 7 C 1.50707 * 109.47068 * 269.99331 * 6 5 4 8 8 H 1.07998 * 119.99808 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00011 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99791 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46927 * 60.00326 * 11 9 7 13 13 H 1.48502 * 109.47003 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47520 * 300.00163 * 11 9 7 15 15 C 1.34769 * 120.00336 * 96.68053 * 5 4 2 16 16 O 1.21279 * 120.00120 * 185.40683 * 15 5 4 17 17 C 1.50703 * 120.00068 * 5.41108 * 15 5 4 18 18 C 1.52999 * 109.47093 * 174.69694 * 17 15 5 19 19 H 1.09002 * 112.41810 * 45.33057 * 18 17 15 20 20 C 1.52886 * 113.04867 * 174.81287 * 18 17 15 21 21 C 1.50384 * 82.51234 * 115.45335 * 20 18 17 22 22 O 1.21284 * 131.83711 * 179.97438 * 21 20 18 23 23 N 1.34598 * 96.31714 * 359.96650 * 21 20 18 24 24 H 1.08999 * 109.47270 * 300.00347 * 1 2 3 25 25 H 1.08995 * 109.47049 * 60.00528 * 1 2 3 26 26 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47565 * 239.99191 * 2 1 3 28 28 H 1.09000 * 109.47253 * 64.69854 * 3 2 1 29 29 H 1.09001 * 109.47011 * 184.70807 * 3 2 1 30 30 H 1.09001 * 109.46770 * 304.70214 * 3 2 1 31 31 H 1.08997 * 109.47569 * 54.11111 * 4 2 1 32 32 H 1.09002 * 109.47413 * 294.10518 * 4 2 1 33 33 H 1.08998 * 109.47387 * 29.99756 * 6 5 4 34 34 H 1.09004 * 109.47301 * 149.99984 * 6 5 4 35 35 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 36 36 H 1.09001 * 109.46590 * 294.69601 * 17 15 5 37 37 H 1.08995 * 109.46796 * 54.69502 * 17 15 5 38 38 H 1.08996 * 114.37941 * 228.85217 * 20 18 17 39 39 H 1.08995 * 114.37771 * 2.06189 * 20 18 17 40 40 H 0.97000 * 134.66698 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0398 -0.7212 1.2494 5 7 3.4980 -0.8451 1.1807 6 6 4.1049 -1.9448 0.4267 7 6 4.2994 -3.1305 1.3364 8 1 4.0004 -3.0710 2.3724 9 6 4.8580 -4.2916 0.8457 10 7 5.2216 -4.3643 -0.4161 11 14 5.0984 -5.7614 1.9731 12 1 3.7829 -6.1948 2.5087 13 1 5.7125 -6.8766 1.2085 14 1 5.9902 -5.3819 3.0981 15 6 4.2811 0.0525 1.8111 16 8 5.4853 0.0084 1.6744 17 6 3.6603 1.1109 2.6860 18 6 4.7645 1.9097 3.3815 19 1 5.5670 2.1905 2.6994 20 6 4.2290 3.0891 4.1937 21 6 4.7885 2.2973 5.3434 22 8 4.8148 2.5121 6.5367 23 7 5.2500 1.2707 4.6054 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.7470 1.9315 0.9291 29 1 3.1267 1.4436 -0.0844 30 1 1.6095 1.9800 -0.8449 31 1 1.5930 -1.7138 1.3038 32 1 1.7652 -0.1500 2.1362 33 1 3.4504 -2.2238 -0.3991 34 1 5.0704 -1.6264 0.0335 35 1 5.6150 -5.1810 -0.7612 36 1 3.0579 1.7814 2.0731 37 1 3.0273 0.6369 3.4361 38 1 4.7407 4.0332 4.0070 39 1 3.1427 3.1779 4.1956 40 1 5.7156 0.4432 4.8040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:05 Heat of formation + Delta-G solvation = -81.480864 kcal Electronic energy + Delta-G solvation = -21207.167791 eV Core-core repulsion = 18021.504925 eV Total energy + Delta-G solvation = -3185.662866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07775 -40.57498 -37.85728 -37.47138 -35.47987 -34.09590 -31.93908 -29.80895 -28.90405 -27.90653 -26.86042 -25.16719 -23.08060 -21.36347 -20.69322 -19.80990 -18.62757 -18.44507 -17.74505 -17.50271 -17.27468 -16.66175 -16.30101 -15.85186 -15.49534 -14.72475 -14.58057 -14.44715 -14.03127 -13.80772 -13.72618 -13.31442 -13.26206 -12.90601 -12.80741 -12.74070 -12.56747 -12.47693 -12.36175 -12.23674 -12.00089 -11.75856 -11.63040 -11.45863 -11.11750 -10.66126 -10.54624 -10.22280 -9.35779 -8.23989 -6.39014 1.33917 1.37047 1.44463 1.52462 1.87533 2.29443 2.40633 2.48454 3.02163 3.05359 3.57005 3.76105 3.97148 3.99138 4.10621 4.31586 4.38272 4.49769 4.59720 4.68444 4.77535 4.85104 4.91103 4.97997 5.06631 5.11714 5.13138 5.15533 5.25273 5.35985 5.42548 5.48424 5.55297 5.59517 5.87275 5.99129 6.05823 6.69433 6.85334 7.27409 7.29215 7.52210 8.82340 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.006435 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.109737 B = 4350.028369 C = 5803.477293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.109 3.891 5 N -0.600 5.600 6 C 0.264 3.736 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.278 1.278 15 C 0.499 3.501 16 O -0.598 6.598 17 C -0.145 4.145 18 C 0.135 3.865 19 H 0.098 0.902 20 C -0.135 4.135 21 C 0.505 3.495 22 O -0.580 6.580 23 N -0.738 5.738 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.016 0.984 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 15.098 3.021 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.203 4.203 4 C -0.014 4.014 5 N -0.330 5.330 6 C 0.143 3.857 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.787 3.213 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.204 1.204 15 C 0.289 3.711 16 O -0.479 6.479 17 C -0.185 4.185 18 C 0.030 3.970 19 H 0.116 0.884 20 C -0.175 4.175 21 C 0.293 3.707 22 O -0.459 6.459 23 N -0.396 5.396 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.034 0.966 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.497 14.998 3.429 18.625 hybrid contribution 1.077 -2.122 0.102 2.382 sum -9.419 12.876 3.531 16.340 Atomic orbital electron populations 1.21716 0.92411 1.01997 1.03251 1.21507 0.97463 0.97146 0.97285 1.21965 0.99824 0.94883 1.03614 1.21878 0.78562 1.01407 0.99513 1.48161 1.07491 1.26761 1.50586 1.18610 0.92335 0.83844 0.90938 1.21693 1.41293 0.98398 0.96728 0.92905 1.25817 0.94835 1.01740 0.96614 1.70041 1.42573 1.28873 1.15207 0.85540 0.78880 0.78324 0.78507 1.18609 1.20406 1.20392 1.21262 0.86685 0.82796 0.80376 1.90647 1.17033 1.75064 1.65195 1.22336 0.99366 0.97167 0.99627 1.22025 0.96077 0.90698 0.88199 0.88428 1.23666 1.06440 0.98739 0.88630 1.22826 0.76867 0.82831 0.88192 1.90688 1.61047 1.76334 1.17857 1.48279 1.58508 1.22680 1.10173 0.90268 0.91636 0.93326 0.94073 0.89298 0.94978 0.91372 0.92015 0.87409 0.96616 0.98503 0.92454 0.83235 0.87086 0.83122 0.82504 0.74841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.11 -2.68 3.11 -10.79 -0.03 -2.72 16 3 C -0.15 -2.69 7.59 71.98 0.55 -2.14 16 4 C 0.11 3.05 4.89 86.38 0.42 3.48 16 5 N -0.60 -23.52 2.26 -826.14 -1.87 -25.39 16 6 C 0.26 13.93 5.22 85.64 0.45 14.38 16 7 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.52 5.46 84.65 0.46 0.98 16 10 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 11 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.50 18.31 6.45 87.66 0.57 18.88 16 16 O -0.60 -28.15 15.29 -3.03 -0.05 -28.19 16 17 C -0.14 -3.11 3.95 29.85 0.12 -2.99 16 18 C 0.14 2.83 3.77 37.03 0.14 2.97 16 19 H 0.10 2.28 7.63 -2.39 -0.02 2.26 16 20 C -0.14 -1.77 8.14 29.71 0.24 -1.53 16 21 C 0.51 12.79 9.37 79.64 0.75 13.54 16 22 O -0.58 -19.93 18.03 -3.04 -0.05 -19.98 16 23 N -0.74 -19.39 7.45 -514.09 -3.83 -23.22 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.04 1.25 8.01 -2.39 -0.02 1.23 16 28 H 0.09 1.01 6.49 -2.39 -0.02 1.00 16 29 H 0.03 0.76 6.87 -2.39 -0.02 0.74 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 32 H 0.11 2.13 6.10 -2.39 -0.01 2.12 16 33 H 0.02 0.86 7.94 -2.39 -0.02 0.84 16 34 H 0.00 -0.19 7.35 -2.39 -0.02 -0.21 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.15 2.03 4.80 -2.39 -0.01 2.02 16 37 H 0.11 2.11 7.37 -2.39 -0.02 2.09 16 38 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.16 0.98 8.00 -2.39 -0.02 0.96 16 40 H 0.41 11.88 8.96 -92.71 -0.83 11.05 16 Total: -1.00 -80.75 328.16 1.28 -79.47 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.21 Total: 13.51 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 4.56 Total: 12.67 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.41 Total: -104.27 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.10 Total: -48.17 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -80.75 1.28 -79.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.011 kcal (2) G-P(sol) polarization free energy of solvation -80.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds