Wall clock time and date at job start Mon Mar 30 2020 00:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46721 * 2 1 4 4 C 1.52990 * 109.47201 * 120.00209 * 2 1 3 5 5 N 1.46495 * 109.47337 * 66.16578 * 4 2 1 6 6 C 1.46509 * 119.99875 * 264.63054 * 5 4 2 7 7 C 1.50703 * 109.47148 * 273.34814 * 6 5 4 8 8 H 1.08007 * 119.99725 * 5.12304 * 7 6 5 9 9 C 1.37872 * 120.00353 * 185.11713 * 7 6 5 10 10 N 1.31520 * 119.99602 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 120.00480 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47036 * 60.00097 * 11 9 7 13 13 H 1.48497 * 109.47411 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47402 * 300.00356 * 11 9 7 15 15 C 1.34780 * 120.00354 * 84.62933 * 5 4 2 16 16 O 1.21277 * 119.99418 * 4.91332 * 15 5 4 17 17 C 1.50700 * 120.00141 * 184.91559 * 15 5 4 18 18 H 1.09004 * 110.43409 * 34.02313 * 17 15 5 19 19 C 1.54624 * 110.48455 * 156.57136 * 17 15 5 20 20 C 1.54485 * 101.76431 * 143.60612 * 19 17 15 21 21 N 1.46761 * 105.54732 * 334.53793 * 20 19 17 22 22 C 1.34620 * 111.18639 * 17.05596 * 21 20 19 23 23 O 1.21278 * 124.91246 * 179.60189 * 22 21 20 24 24 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47214 * 299.99813 * 1 2 3 26 26 H 1.08998 * 109.47257 * 60.00144 * 1 2 3 27 27 H 1.08999 * 109.47154 * 240.00724 * 2 1 3 28 28 H 1.09001 * 109.46897 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47406 * 300.00407 * 3 2 1 30 30 H 1.08999 * 109.46716 * 60.00456 * 3 2 1 31 31 H 1.09006 * 109.47212 * 306.16517 * 4 2 1 32 32 H 1.09007 * 109.47438 * 186.16470 * 4 2 1 33 33 H 1.08996 * 109.47074 * 33.35183 * 6 5 4 34 34 H 1.09000 * 109.46995 * 153.34796 * 6 5 4 35 35 H 0.97003 * 119.99804 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.97082 * 25.48700 * 19 17 15 37 37 H 1.09008 * 110.96666 * 261.72135 * 19 17 15 38 38 H 1.09004 * 110.24596 * 93.58346 * 20 19 17 39 39 H 1.08997 * 110.24365 * 215.49455 * 20 19 17 40 40 H 0.97001 * 124.34331 * 197.07417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6767 -2.1386 1.1773 6 6 0.4579 -2.6166 1.8350 7 6 0.7616 -2.9526 3.2724 8 1 1.7401 -2.7458 3.6802 9 6 -0.2096 -3.5240 4.0669 10 7 -1.4010 -3.7762 3.5701 11 14 0.1665 -3.9399 5.8486 12 1 0.5432 -2.7018 6.5770 13 1 -1.0352 -4.5406 6.4811 14 1 1.2909 -4.9083 5.9042 15 6 2.4634 -3.0029 0.5060 16 8 3.5166 -2.6258 0.0376 17 6 2.0344 -4.4377 0.3376 18 1 0.9506 -4.5018 0.2399 19 6 2.7270 -5.0687 -0.8925 20 6 2.9762 -6.5139 -0.4067 21 7 3.0401 -6.4313 1.0572 22 6 2.5116 -5.2761 1.5029 23 8 2.4308 -4.9543 2.6694 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.5894 -0.2751 2.1358 32 1 3.1245 -0.6267 1.3061 33 1 -0.3045 -1.8386 1.7970 34 1 0.0940 -3.5072 1.3227 35 1 -2.0842 -4.1785 4.1289 36 1 3.6675 -4.5635 -1.1124 37 1 2.0674 -5.0571 -1.7602 38 1 2.1545 -7.1615 -0.7125 39 1 3.9192 -6.8883 -0.8049 40 1 3.4150 -7.1199 1.6283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:21 Heat of formation + Delta-G solvation = -75.354967 kcal Electronic energy + Delta-G solvation = -22036.777793 eV Core-core repulsion = 18851.380566 eV Total energy + Delta-G solvation = -3185.397227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31272 -38.43058 -36.16790 -35.55768 -33.92155 -32.11001 -31.02156 -27.81248 -27.40376 -26.74181 -25.30577 -22.88067 -21.70518 -20.92983 -19.75860 -18.01183 -16.85342 -16.70548 -16.42158 -15.54809 -15.40812 -14.51554 -14.35613 -14.25266 -13.76163 -13.46642 -13.17193 -12.77527 -12.54571 -12.47438 -12.18766 -12.07022 -11.95248 -11.65084 -11.40965 -11.25159 -10.94418 -10.78427 -10.77094 -10.55001 -10.42150 -10.18485 -9.89942 -9.54674 -9.15865 -9.02075 -8.66808 -8.28970 -7.62859 -5.95009 -3.93092 3.07992 3.35503 3.42771 3.44402 3.54892 3.77247 4.03106 4.58331 4.70724 4.89747 5.08672 5.26909 5.32854 5.36612 5.40336 5.47249 5.53033 5.68184 5.76829 5.91073 6.00191 6.03793 6.04390 6.18915 6.30799 6.31699 6.38048 6.44537 6.63513 6.75578 6.88657 7.22485 7.24453 7.44011 7.61704 8.02612 8.25640 8.37280 8.85977 8.93018 9.12193 9.70309 11.13339 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.010274 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.978954 B = 2724.540473 C = 4463.213871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.582 5.582 6 C 0.234 3.766 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.907 5.907 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.274 1.274 15 C 0.536 3.464 16 O -0.572 6.572 17 C -0.144 4.144 18 H 0.129 0.871 19 C -0.123 4.123 20 C 0.107 3.893 21 N -0.745 5.745 22 C 0.524 3.476 23 O -0.463 6.463 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -0.571 -10.234 11.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.310 5.310 6 C 0.115 3.885 7 C -0.532 4.532 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.547 5.547 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.200 1.200 15 C 0.322 3.678 16 O -0.453 6.453 17 C -0.168 4.168 18 H 0.147 0.853 19 C -0.161 4.161 20 C -0.018 4.018 21 N -0.405 5.405 22 C 0.307 3.693 23 O -0.332 6.332 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.929 -0.132 -9.793 10.965 hybrid contribution 0.057 -0.811 1.249 1.490 sum 4.986 -0.944 -8.545 9.938 Atomic orbital electron populations 1.21887 0.95005 1.02483 1.00891 1.21489 0.96306 0.95862 0.99322 1.21746 1.00802 0.95945 1.01400 1.21365 1.00159 0.81063 0.97244 1.48163 1.26017 1.06994 1.49843 1.19610 0.80611 0.95430 0.92849 1.21269 0.98173 1.39054 0.94700 0.92100 1.24770 0.94854 0.95479 0.98571 1.69913 1.03600 1.44753 1.36481 0.86594 0.77457 0.78776 0.84850 1.20603 1.21760 1.19989 1.19575 0.83667 0.86386 0.78157 1.90570 1.23650 1.79011 1.52098 1.22028 1.04064 0.94347 0.96400 0.85324 1.22624 1.02807 0.94176 0.96465 1.21946 1.01603 0.97549 0.80726 1.46201 1.64716 1.21510 1.08059 1.20245 0.77703 0.81836 0.89524 1.90992 1.52149 1.72391 1.17635 0.91838 0.92615 0.93679 0.91394 0.92839 0.93006 0.92683 0.90180 0.91356 0.94492 0.94621 0.93067 0.88453 0.89505 0.91579 0.90787 0.75541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.38 37.16 0.31 -1.94 16 2 C -0.11 -1.75 3.08 -90.62 -0.28 -2.03 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 4 C 0.13 2.38 4.83 -4.05 -0.02 2.36 16 5 N -0.58 -12.50 2.22 -175.06 -0.39 -12.89 16 6 C 0.23 5.66 4.28 -5.19 -0.02 5.64 16 7 C -0.49 -13.59 6.79 -34.44 -0.23 -13.82 16 8 H 0.06 1.79 7.61 -52.48 -0.40 1.39 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.91 -26.12 13.29 55.43 0.74 -25.38 16 11 Si 0.89 22.79 29.54 -169.99 -5.02 17.77 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 14 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.54 11.32 6.72 -10.98 -0.07 11.24 16 16 O -0.57 -12.75 15.28 5.56 0.08 -12.67 16 17 C -0.14 -2.66 2.51 -91.78 -0.23 -2.89 16 18 H 0.13 2.38 6.20 -51.93 -0.32 2.06 16 19 C -0.12 -1.66 6.62 -25.10 -0.17 -1.83 16 20 C 0.11 1.22 7.78 -3.12 -0.02 1.20 16 21 N -0.75 -11.28 6.26 -59.15 -0.37 -11.65 16 22 C 0.52 10.66 7.86 -10.77 -0.08 10.57 16 23 O -0.46 -11.72 14.93 5.56 0.08 -11.64 16 24 H 0.06 1.10 6.24 -51.93 -0.32 0.77 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 32 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 33 H 0.04 0.91 6.44 -51.93 -0.33 0.58 16 34 H 0.04 0.90 5.70 -51.93 -0.30 0.60 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.10 1.44 6.91 -51.93 -0.36 1.08 16 37 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.41 5.35 8.96 -40.82 -0.37 4.99 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -33.01 321.55 -6.76 -39.76 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.15 Total: 3.16 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.58 Total: 8.69 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.02 Total: -49.92 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.17 Total: -24.31 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.01 -6.76 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.593 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds