Wall clock time and date at job start Mon Mar 30 2020 00:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46721 * 2 1 4 4 C 1.52990 * 109.47201 * 120.00209 * 2 1 3 5 5 N 1.46495 * 109.47337 * 66.16578 * 4 2 1 6 6 C 1.46509 * 119.99875 * 264.63054 * 5 4 2 7 7 C 1.50703 * 109.47148 * 273.34814 * 6 5 4 8 8 H 1.08007 * 119.99725 * 5.12304 * 7 6 5 9 9 C 1.37872 * 120.00353 * 185.11713 * 7 6 5 10 10 N 1.31520 * 119.99602 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 120.00480 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47036 * 60.00097 * 11 9 7 13 13 H 1.48497 * 109.47411 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47402 * 300.00356 * 11 9 7 15 15 C 1.34780 * 120.00354 * 84.62933 * 5 4 2 16 16 O 1.21277 * 119.99418 * 4.91332 * 15 5 4 17 17 C 1.50700 * 120.00141 * 184.91559 * 15 5 4 18 18 H 1.09004 * 110.43409 * 34.02313 * 17 15 5 19 19 C 1.54624 * 110.48455 * 156.57136 * 17 15 5 20 20 C 1.54485 * 101.76431 * 143.60612 * 19 17 15 21 21 N 1.46761 * 105.54732 * 334.53793 * 20 19 17 22 22 C 1.34620 * 111.18639 * 17.05596 * 21 20 19 23 23 O 1.21278 * 124.91246 * 179.60189 * 22 21 20 24 24 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47214 * 299.99813 * 1 2 3 26 26 H 1.08998 * 109.47257 * 60.00144 * 1 2 3 27 27 H 1.08999 * 109.47154 * 240.00724 * 2 1 3 28 28 H 1.09001 * 109.46897 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47406 * 300.00407 * 3 2 1 30 30 H 1.08999 * 109.46716 * 60.00456 * 3 2 1 31 31 H 1.09006 * 109.47212 * 306.16517 * 4 2 1 32 32 H 1.09007 * 109.47438 * 186.16470 * 4 2 1 33 33 H 1.08996 * 109.47074 * 33.35183 * 6 5 4 34 34 H 1.09000 * 109.46995 * 153.34796 * 6 5 4 35 35 H 0.97003 * 119.99804 * 179.97438 * 10 9 7 36 36 H 1.08997 * 110.97082 * 25.48700 * 19 17 15 37 37 H 1.09008 * 110.96666 * 261.72135 * 19 17 15 38 38 H 1.09004 * 110.24596 * 93.58346 * 20 19 17 39 39 H 1.08997 * 110.24365 * 215.49455 * 20 19 17 40 40 H 0.97001 * 124.34331 * 197.07417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 1.6767 -2.1386 1.1773 6 6 0.4579 -2.6166 1.8350 7 6 0.7616 -2.9526 3.2724 8 1 1.7401 -2.7458 3.6802 9 6 -0.2096 -3.5240 4.0669 10 7 -1.4010 -3.7762 3.5701 11 14 0.1665 -3.9399 5.8486 12 1 0.5432 -2.7018 6.5770 13 1 -1.0352 -4.5406 6.4811 14 1 1.2909 -4.9083 5.9042 15 6 2.4634 -3.0029 0.5060 16 8 3.5166 -2.6258 0.0376 17 6 2.0344 -4.4377 0.3376 18 1 0.9506 -4.5018 0.2399 19 6 2.7270 -5.0687 -0.8925 20 6 2.9762 -6.5139 -0.4067 21 7 3.0401 -6.4313 1.0572 22 6 2.5116 -5.2761 1.5029 23 8 2.4308 -4.9543 2.6694 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.5894 -0.2751 2.1358 32 1 3.1245 -0.6267 1.3061 33 1 -0.3045 -1.8386 1.7970 34 1 0.0940 -3.5072 1.3227 35 1 -2.0842 -4.1785 4.1289 36 1 3.6675 -4.5635 -1.1124 37 1 2.0674 -5.0571 -1.7602 38 1 2.1545 -7.1615 -0.7125 39 1 3.9192 -6.8883 -0.8049 40 1 3.4150 -7.1199 1.6283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:20 Heat of formation + Delta-G solvation = -98.600543 kcal Electronic energy + Delta-G solvation = -22037.785797 eV Core-core repulsion = 18851.380566 eV Total energy + Delta-G solvation = -3186.405231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82294 -39.99695 -37.73317 -37.02962 -35.63332 -34.09934 -32.35564 -29.42657 -28.98653 -27.97129 -26.82676 -24.84620 -22.93760 -22.35909 -21.11165 -19.65005 -18.57922 -18.29294 -18.14011 -17.13908 -16.95945 -16.31378 -15.95950 -15.76272 -15.14848 -14.82478 -14.60447 -14.39576 -14.08374 -13.94009 -13.81049 -13.56322 -13.30160 -13.09243 -12.93827 -12.75033 -12.62544 -12.56152 -12.15951 -12.06387 -11.96628 -11.74473 -11.56165 -11.49924 -10.84748 -10.69968 -10.42091 -9.93474 -9.40926 -8.11184 -6.13303 1.34674 1.39027 1.44450 1.50728 1.77777 2.31561 2.47276 2.64534 3.21904 3.44752 3.56912 3.78172 4.00517 4.04997 4.18153 4.20836 4.21415 4.54265 4.62548 4.69011 4.79208 4.81830 4.91867 4.95418 5.00858 5.04218 5.08191 5.18794 5.23471 5.28551 5.43486 5.48482 5.74696 5.90369 5.95968 6.13427 6.16707 6.57363 6.89925 7.27093 7.41965 7.52084 8.95248 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.010274 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.978954 B = 2724.540473 C = 4463.213871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.135 4.135 4 C 0.120 3.880 5 N -0.588 5.588 6 C 0.254 3.746 7 C -0.491 4.491 8 H 0.035 0.965 9 C 0.024 3.976 10 N -0.927 5.927 11 Si 0.940 3.060 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.290 1.290 15 C 0.528 3.472 16 O -0.586 6.586 17 C -0.149 4.149 18 H 0.125 0.875 19 C -0.113 4.113 20 C 0.106 3.894 21 N -0.730 5.730 22 C 0.510 3.490 23 O -0.529 6.529 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -0.978 -11.903 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.133 3.867 7 C -0.530 4.530 8 H 0.054 0.946 9 C -0.174 4.174 10 N -0.569 5.569 11 Si 0.768 3.232 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.216 1.216 15 C 0.316 3.684 16 O -0.469 6.469 17 C -0.173 4.173 18 H 0.142 0.858 19 C -0.151 4.151 20 C -0.017 4.017 21 N -0.388 5.388 22 C 0.294 3.706 23 O -0.403 6.403 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.134 -0.564 -11.509 12.615 hybrid contribution 0.079 -0.714 1.708 1.853 sum 5.213 -1.278 -9.802 11.175 Atomic orbital electron populations 1.21828 0.94539 1.01344 1.02050 1.21398 0.96560 0.97191 0.96905 1.21708 1.00891 0.93899 1.02795 1.21524 0.99596 0.80298 0.98837 1.48168 1.25424 1.08200 1.49767 1.19202 0.81425 0.94803 0.91225 1.21315 0.96768 1.38523 0.96363 0.94644 1.25300 0.94974 0.95768 1.01397 1.69966 1.03989 1.45554 1.37352 0.85889 0.77009 0.78395 0.81951 1.19833 1.20457 1.21648 1.20068 0.83311 0.87454 0.77564 1.90546 1.24056 1.79599 1.52724 1.22101 1.04277 0.92673 0.98268 0.85755 1.22708 1.02332 0.94664 0.95388 1.22303 1.04793 0.96655 0.77917 1.46200 1.62517 1.19931 1.10175 1.20670 0.77573 0.83288 0.89047 1.90944 1.55189 1.74184 1.20023 0.94103 0.92870 0.91045 0.92287 0.92718 0.90816 0.92068 0.90948 0.92309 0.94967 0.95439 0.92948 0.89532 0.86213 0.88617 0.87164 0.74385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.38 71.98 0.60 -3.62 16 2 C -0.10 -3.14 3.08 -10.79 -0.03 -3.17 16 3 C -0.14 -3.29 9.19 71.98 0.66 -2.63 16 4 C 0.12 4.66 4.83 86.38 0.42 5.08 16 5 N -0.59 -25.88 2.22 -826.15 -1.83 -27.71 16 6 C 0.25 12.61 4.28 85.63 0.37 12.98 16 7 C -0.49 -27.85 6.79 25.60 0.17 -27.68 16 8 H 0.04 2.16 7.61 -2.91 -0.02 2.14 16 9 C 0.02 1.35 5.46 84.65 0.46 1.81 16 10 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 11 Si 0.94 47.48 29.54 68.60 2.03 49.51 16 12 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 14 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 15 C 0.53 22.60 6.72 87.66 0.59 23.19 16 16 O -0.59 -26.28 15.28 -3.02 -0.05 -26.33 16 17 C -0.15 -5.44 2.51 -11.55 -0.03 -5.47 16 18 H 0.12 4.61 6.20 -2.38 -0.01 4.60 16 19 C -0.11 -2.77 6.62 31.65 0.21 -2.56 16 20 C 0.11 2.04 7.78 86.83 0.68 2.71 16 21 N -0.73 -20.84 6.26 -459.52 -2.87 -23.72 16 22 C 0.51 20.85 7.86 87.87 0.69 21.54 16 23 O -0.53 -27.71 14.93 -3.02 -0.05 -27.76 16 24 H 0.04 1.40 6.24 -2.39 -0.01 1.38 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 2.86 8.03 -2.38 -0.02 2.84 16 32 H 0.06 2.36 7.52 -2.38 -0.02 2.34 16 33 H 0.03 1.63 6.44 -2.39 -0.02 1.62 16 34 H 0.03 1.42 5.70 -2.39 -0.01 1.41 16 35 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.09 2.36 6.91 -2.39 -0.02 2.34 16 37 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 40 H 0.42 10.28 8.96 -92.71 -0.83 9.45 16 Total: -1.00 -73.63 321.55 2.51 -71.13 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.21 Total: 16.33 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 4.79 Total: 22.17 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -4.42 Total: -105.05 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.09 Total: -54.08 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -73.63 2.51 -71.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.475 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds