Wall clock time and date at job start Mon Mar 30 2020 00:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46913 * 2 1 4 4 C 1.52994 * 109.47271 * 119.99960 * 2 1 3 5 5 N 1.46506 * 109.47115 * 173.40445 * 4 2 1 6 6 C 1.46498 * 119.99917 * 95.07060 * 5 4 2 7 7 C 1.50695 * 109.47012 * 88.07825 * 6 5 4 8 8 H 1.07996 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99695 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00504 * 359.97438 * 9 7 6 11 11 Si 1.86811 * 119.99930 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46604 * 269.99829 * 11 9 7 13 13 H 1.48499 * 109.47115 * 29.99712 * 11 9 7 14 14 H 1.48501 * 109.47049 * 149.99931 * 11 9 7 15 15 C 1.34775 * 119.99938 * 275.06964 * 5 4 2 16 16 O 1.21284 * 120.00122 * 5.03391 * 15 5 4 17 17 C 1.50698 * 120.00154 * 185.03400 * 15 5 4 18 18 H 1.09004 * 110.43051 * 327.64189 * 17 15 5 19 19 C 1.54621 * 110.49074 * 204.95657 * 17 15 5 20 20 C 1.54486 * 101.76446 * 266.11945 * 19 17 15 21 21 N 1.46766 * 105.47250 * 334.58250 * 20 19 17 22 22 C 1.34418 * 111.30048 * 17.01488 * 21 20 19 23 23 O 1.21282 * 124.93955 * 179.55395 * 22 21 20 24 24 H 1.09001 * 109.46769 * 299.99832 * 1 2 3 25 25 H 1.09000 * 109.46853 * 59.99295 * 1 2 3 26 26 H 1.08992 * 109.46700 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46894 * 240.00709 * 2 1 3 28 28 H 1.09000 * 109.47199 * 300.00144 * 3 2 1 29 29 H 1.09001 * 109.47265 * 60.00472 * 3 2 1 30 30 H 1.09003 * 109.47002 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46741 * 53.40613 * 4 2 1 32 32 H 1.08992 * 109.47565 * 293.40991 * 4 2 1 33 33 H 1.09002 * 109.46884 * 328.08062 * 6 5 4 34 34 H 1.08994 * 109.46831 * 208.07876 * 6 5 4 35 35 H 0.96994 * 120.00818 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.97134 * 24.23117 * 19 17 15 37 37 H 1.09002 * 110.97554 * 147.99915 * 19 17 15 38 38 H 1.08998 * 110.24235 * 215.57918 * 20 19 17 39 39 H 1.09001 * 110.24633 * 93.58485 * 20 19 17 40 40 H 0.96997 * 124.34639 * 197.03596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4965 -0.8601 1.1725 6 6 4.3618 0.1295 1.8191 7 6 4.6094 -0.2775 3.2487 8 1 4.1662 -1.1826 3.6370 9 6 5.4009 0.5062 4.0614 10 7 5.9402 1.6086 3.5888 11 14 5.7084 0.0013 5.8335 12 1 4.6607 0.5911 6.7050 13 1 5.6660 -1.4792 5.9408 14 1 7.0430 0.4907 6.2631 15 6 4.0403 -1.8983 0.5070 16 8 3.3283 -2.6663 -0.1048 17 6 5.5329 -2.1051 0.5232 18 1 6.0492 -1.1466 0.5778 19 6 5.9835 -2.8952 -0.7272 20 6 5.9848 -4.3469 -0.1988 21 7 6.1848 -4.2357 1.2509 22 6 5.9326 -2.9886 1.6844 23 8 6.0130 -2.6248 2.8386 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.5835 -1.7092 1.3101 32 1 1.7763 -0.1439 2.1352 33 1 3.8765 1.1054 1.7980 34 1 5.3115 0.1844 1.2872 35 1 6.4967 2.1602 4.1605 36 1 5.2687 -2.7774 -1.5417 37 1 6.9829 -2.5932 -1.0405 38 1 6.8006 -4.9117 -0.6499 39 1 5.0297 -4.8269 -0.4121 40 1 6.4635 -4.9680 1.8227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:24 Heat of formation + Delta-G solvation = -75.988233 kcal Electronic energy + Delta-G solvation = -22061.349950 eV Core-core repulsion = 18875.925262 eV Total energy + Delta-G solvation = -3185.424688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40173 -38.43194 -36.24756 -35.44967 -33.96552 -32.13197 -31.02626 -27.79949 -27.41395 -26.73808 -25.33023 -22.92436 -21.74893 -20.87229 -19.76874 -18.20744 -16.96526 -16.70412 -16.40473 -15.59466 -14.93249 -14.73199 -14.35619 -14.24617 -13.75703 -13.47163 -13.18713 -12.76778 -12.62241 -12.46447 -12.23989 -12.09482 -11.96278 -11.61726 -11.35136 -11.21205 -10.98251 -10.82778 -10.79122 -10.57755 -10.42935 -10.17237 -9.91049 -9.56670 -9.20776 -9.02044 -8.64531 -8.30771 -7.67012 -5.96351 -3.96554 2.94790 3.38106 3.40613 3.45964 3.59095 3.77012 4.00340 4.58697 4.75231 4.91135 5.08520 5.25960 5.32457 5.38870 5.40880 5.48725 5.51970 5.70764 5.90248 5.95843 5.99765 6.04775 6.06042 6.18916 6.25052 6.29833 6.36550 6.43100 6.62849 6.76457 6.86639 7.22874 7.24719 7.41852 7.56854 8.00672 8.22731 8.33178 8.82598 8.88248 9.09897 9.69170 11.11709 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.010268 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.118802 B = 2726.346056 C = 4460.903216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.146 4.146 4 C 0.128 3.872 5 N -0.583 5.583 6 C 0.232 3.768 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.895 3.105 12 H -0.286 1.286 13 H -0.270 1.270 14 H -0.289 1.289 15 C 0.532 3.468 16 O -0.569 6.569 17 C -0.145 4.145 18 H 0.131 0.869 19 C -0.117 4.117 20 C 0.109 3.891 21 N -0.742 5.742 22 C 0.527 3.473 23 O -0.472 6.472 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 -6.203 -9.572 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.004 3.996 5 N -0.311 5.311 6 C 0.113 3.887 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.544 5.544 11 Si 0.723 3.277 12 H -0.212 1.212 13 H -0.194 1.194 14 H -0.216 1.216 15 C 0.319 3.681 16 O -0.451 6.451 17 C -0.170 4.170 18 H 0.148 0.852 19 C -0.156 4.156 20 C -0.016 4.016 21 N -0.401 5.401 22 C 0.310 3.690 23 O -0.342 6.342 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.816 -6.091 -9.223 11.406 hybrid contribution 0.521 -0.440 1.273 1.444 sum -2.296 -6.531 -7.950 10.542 Atomic orbital electron populations 1.21747 0.95368 1.01393 1.01383 1.21481 0.95236 0.96826 0.99446 1.21888 1.02096 0.95422 1.00874 1.21371 0.80606 1.00270 0.97343 1.48213 1.06772 1.25596 1.50555 1.19646 0.89112 0.86946 0.92979 1.21324 1.29695 1.07933 0.95102 0.92040 1.24774 0.95335 0.94681 0.98636 1.69915 1.33917 1.14193 1.36394 0.86521 0.77048 0.79357 0.84755 1.21235 1.19435 1.21550 1.19614 0.88518 0.80928 0.79056 1.90583 1.62710 1.46548 1.45222 1.22076 0.96462 1.02393 0.96045 0.85164 1.22517 1.02371 0.93615 0.97051 1.21948 1.01487 0.97713 0.80477 1.46196 1.71960 1.12217 1.09747 1.20172 0.77025 0.82595 0.89225 1.90949 1.48841 1.75929 1.18432 0.92728 0.93014 0.92884 0.91136 0.93677 0.92651 0.91823 0.91598 0.90158 0.93988 0.94792 0.93029 0.88752 0.89947 0.91048 0.90926 0.75658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.11 -1.75 3.08 -90.62 -0.28 -2.03 16 3 C -0.15 -2.27 8.39 37.16 0.31 -1.96 16 4 C 0.13 2.38 4.75 -4.04 -0.02 2.36 16 5 N -0.58 -12.30 2.23 -175.07 -0.39 -12.69 16 6 C 0.23 5.57 4.14 -5.20 -0.02 5.55 16 7 C -0.50 -13.69 7.35 -34.44 -0.25 -13.94 16 8 H 0.06 1.78 7.36 -52.49 -0.39 1.40 16 9 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 10 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 11 Si 0.89 22.77 29.54 -169.99 -5.02 17.75 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 C 0.53 10.91 6.75 -10.99 -0.07 10.83 16 16 O -0.57 -12.00 15.52 5.55 0.09 -11.92 16 17 C -0.15 -2.69 2.73 -91.78 -0.25 -2.94 16 18 H 0.13 2.54 5.93 -51.93 -0.31 2.23 16 19 C -0.12 -1.59 6.39 -25.10 -0.16 -1.75 16 20 C 0.11 1.35 7.65 -3.12 -0.02 1.33 16 21 N -0.74 -11.32 6.24 -59.19 -0.37 -11.69 16 22 C 0.53 10.58 7.74 -10.86 -0.08 10.49 16 23 O -0.47 -11.73 15.43 5.56 0.09 -11.65 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.11 6.24 -51.93 -0.32 0.79 16 31 H 0.07 1.25 7.66 -51.92 -0.40 0.85 16 32 H 0.08 1.52 8.03 -51.93 -0.42 1.10 16 33 H 0.04 1.04 6.46 -51.93 -0.34 0.70 16 34 H 0.03 0.85 5.84 -51.93 -0.30 0.55 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.09 1.26 7.46 -51.93 -0.39 0.88 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.41 5.30 8.96 -40.82 -0.37 4.94 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -32.21 322.64 -6.78 -38.99 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.16 Total: 3.38 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -0.61 Total: 8.21 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.02 Total: -49.63 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.17 Total: -23.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.21 -6.78 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.994 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds