Wall clock time and date at job start Mon Mar 30 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46913 * 2 1 4 4 C 1.52994 * 109.47271 * 119.99960 * 2 1 3 5 5 N 1.46506 * 109.47115 * 173.40445 * 4 2 1 6 6 C 1.46498 * 119.99917 * 95.07060 * 5 4 2 7 7 C 1.50695 * 109.47012 * 88.07825 * 6 5 4 8 8 H 1.07996 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99695 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00504 * 359.97438 * 9 7 6 11 11 Si 1.86811 * 119.99930 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46604 * 269.99829 * 11 9 7 13 13 H 1.48499 * 109.47115 * 29.99712 * 11 9 7 14 14 H 1.48501 * 109.47049 * 149.99931 * 11 9 7 15 15 C 1.34775 * 119.99938 * 275.06964 * 5 4 2 16 16 O 1.21284 * 120.00122 * 5.03391 * 15 5 4 17 17 C 1.50698 * 120.00154 * 185.03400 * 15 5 4 18 18 H 1.09004 * 110.43051 * 327.64189 * 17 15 5 19 19 C 1.54621 * 110.49074 * 204.95657 * 17 15 5 20 20 C 1.54486 * 101.76446 * 266.11945 * 19 17 15 21 21 N 1.46766 * 105.47250 * 334.58250 * 20 19 17 22 22 C 1.34418 * 111.30048 * 17.01488 * 21 20 19 23 23 O 1.21282 * 124.93955 * 179.55395 * 22 21 20 24 24 H 1.09001 * 109.46769 * 299.99832 * 1 2 3 25 25 H 1.09000 * 109.46853 * 59.99295 * 1 2 3 26 26 H 1.08992 * 109.46700 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46894 * 240.00709 * 2 1 3 28 28 H 1.09000 * 109.47199 * 300.00144 * 3 2 1 29 29 H 1.09001 * 109.47265 * 60.00472 * 3 2 1 30 30 H 1.09003 * 109.47002 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46741 * 53.40613 * 4 2 1 32 32 H 1.08992 * 109.47565 * 293.40991 * 4 2 1 33 33 H 1.09002 * 109.46884 * 328.08062 * 6 5 4 34 34 H 1.08994 * 109.46831 * 208.07876 * 6 5 4 35 35 H 0.96994 * 120.00818 * 179.97438 * 10 9 7 36 36 H 1.09003 * 110.97134 * 24.23117 * 19 17 15 37 37 H 1.09002 * 110.97554 * 147.99915 * 19 17 15 38 38 H 1.08998 * 110.24235 * 215.57918 * 20 19 17 39 39 H 1.09001 * 110.24633 * 93.58485 * 20 19 17 40 40 H 0.96997 * 124.34639 * 197.03596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4965 -0.8601 1.1725 6 6 4.3618 0.1295 1.8191 7 6 4.6094 -0.2775 3.2487 8 1 4.1662 -1.1826 3.6370 9 6 5.4009 0.5062 4.0614 10 7 5.9402 1.6086 3.5888 11 14 5.7084 0.0013 5.8335 12 1 4.6607 0.5911 6.7050 13 1 5.6660 -1.4792 5.9408 14 1 7.0430 0.4907 6.2631 15 6 4.0403 -1.8983 0.5070 16 8 3.3283 -2.6663 -0.1048 17 6 5.5329 -2.1051 0.5232 18 1 6.0492 -1.1466 0.5778 19 6 5.9835 -2.8952 -0.7272 20 6 5.9848 -4.3469 -0.1988 21 7 6.1848 -4.2357 1.2509 22 6 5.9326 -2.9886 1.6844 23 8 6.0130 -2.6248 2.8386 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.5835 -1.7092 1.3101 32 1 1.7763 -0.1439 2.1352 33 1 3.8765 1.1054 1.7980 34 1 5.3115 0.1844 1.2872 35 1 6.4967 2.1602 4.1605 36 1 5.2687 -2.7774 -1.5417 37 1 6.9829 -2.5932 -1.0405 38 1 6.8006 -4.9117 -0.6499 39 1 5.0297 -4.8269 -0.4121 40 1 6.4635 -4.9680 1.8227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824234868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:23 Heat of formation + Delta-G solvation = -98.296561 kcal Electronic energy + Delta-G solvation = -22062.317312 eV Core-core repulsion = 18875.925262 eV Total energy + Delta-G solvation = -3186.392049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90488 -39.99592 -37.79557 -36.92545 -35.66007 -34.11271 -32.36506 -29.44637 -28.97252 -27.97322 -26.85012 -24.86667 -23.02523 -22.29812 -21.12147 -19.79637 -18.61096 -18.44188 -18.11356 -17.21002 -16.49373 -16.33549 -16.12495 -15.68473 -15.15943 -14.86556 -14.57042 -14.38485 -14.13773 -14.04174 -13.80928 -13.61381 -13.37228 -13.05558 -12.96526 -12.72473 -12.60672 -12.37234 -12.22880 -12.07640 -12.00804 -11.79514 -11.56598 -11.48987 -10.87448 -10.70598 -10.42668 -9.94512 -9.42503 -8.11987 -6.16213 1.33247 1.36041 1.38261 1.52963 1.80909 2.31748 2.47539 2.60017 3.21202 3.50272 3.58336 3.68129 3.98577 4.04587 4.14084 4.20559 4.31290 4.58692 4.62104 4.68574 4.77718 4.81278 4.90767 4.94666 5.01911 5.03973 5.08120 5.16511 5.20948 5.29375 5.43637 5.48101 5.73559 5.87635 5.93604 6.10072 6.14487 6.56015 6.89017 7.24999 7.38616 7.51544 8.94455 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.010268 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.118802 B = 2726.346056 C = 4460.903216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C -0.141 4.141 4 C 0.123 3.877 5 N -0.590 5.590 6 C 0.252 3.748 7 C -0.497 4.497 8 H 0.038 0.962 9 C 0.025 3.975 10 N -0.926 5.926 11 Si 0.941 3.059 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.283 1.283 15 C 0.528 3.472 16 O -0.575 6.575 17 C -0.152 4.152 18 H 0.114 0.886 19 C -0.108 4.108 20 C 0.107 3.893 21 N -0.725 5.725 22 C 0.517 3.483 23 O -0.534 6.534 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 -7.053 -11.041 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 C -0.198 4.198 4 C 0.000 4.000 5 N -0.318 5.318 6 C 0.131 3.869 7 C -0.536 4.536 8 H 0.057 0.943 9 C -0.173 4.173 10 N -0.567 5.567 11 Si 0.769 3.231 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.209 1.209 15 C 0.315 3.685 16 O -0.457 6.457 17 C -0.176 4.176 18 H 0.132 0.868 19 C -0.146 4.146 20 C -0.016 4.016 21 N -0.382 5.382 22 C 0.300 3.700 23 O -0.409 6.409 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.059 -6.985 -10.735 13.168 hybrid contribution 0.572 -0.268 1.666 1.782 sum -2.486 -7.253 -9.069 11.876 Atomic orbital electron populations 1.21705 0.92790 1.02059 1.02714 1.21390 0.97270 0.96273 0.97156 1.21831 1.00484 0.95520 1.01970 1.21529 0.79390 1.00304 0.98745 1.48203 1.07533 1.25514 1.50566 1.19221 0.89088 0.87139 0.91404 1.21376 1.28974 1.06614 0.96650 0.94329 1.25323 0.95585 0.94960 1.01444 1.69970 1.34644 1.14819 1.37289 0.85805 0.77495 0.77846 0.81968 1.19875 1.21240 1.20870 1.19964 0.89493 0.80433 0.78562 1.90563 1.63202 1.46473 1.45430 1.22123 0.94839 1.02349 0.98298 0.86829 1.22628 1.03944 0.93263 0.94744 1.22227 1.03456 0.97485 0.78416 1.46169 1.69767 1.10885 1.11409 1.20508 0.76618 0.84154 0.88673 1.90905 1.51862 1.77395 1.20693 0.92100 0.90980 0.92590 0.92158 0.91177 0.92901 0.94253 0.92085 0.90936 0.94708 0.95758 0.92880 0.88225 0.87020 0.86249 0.91014 0.74331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.19 71.98 0.66 -2.59 16 2 C -0.10 -3.13 3.08 -10.79 -0.03 -3.17 16 3 C -0.14 -4.29 8.39 71.98 0.60 -3.69 16 4 C 0.12 4.64 4.75 86.38 0.41 5.05 16 5 N -0.59 -25.40 2.23 -826.17 -1.84 -27.25 16 6 C 0.25 12.45 4.14 85.63 0.35 12.80 16 7 C -0.50 -27.93 7.35 25.60 0.19 -27.74 16 8 H 0.04 2.32 7.36 -2.91 -0.02 2.30 16 9 C 0.03 1.45 5.46 84.66 0.46 1.91 16 10 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 11 Si 0.94 47.53 29.54 68.60 2.03 49.56 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 14 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 15 C 0.53 21.71 6.75 87.66 0.59 22.30 16 16 O -0.57 -23.83 15.52 -3.04 -0.05 -23.88 16 17 C -0.15 -5.58 2.73 -11.55 -0.03 -5.61 16 18 H 0.11 4.54 5.93 -2.39 -0.01 4.53 16 19 C -0.11 -2.65 6.39 31.65 0.20 -2.45 16 20 C 0.11 2.31 7.65 86.83 0.66 2.98 16 21 N -0.72 -20.86 6.24 -459.78 -2.87 -23.73 16 22 C 0.52 20.80 7.74 87.90 0.68 21.48 16 23 O -0.53 -27.36 15.43 -3.03 -0.05 -27.41 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.37 6.24 -2.39 -0.01 1.36 16 31 H 0.06 2.33 7.66 -2.38 -0.02 2.31 16 32 H 0.07 2.81 8.03 -2.39 -0.02 2.79 16 33 H 0.03 1.77 6.46 -2.39 -0.02 1.76 16 34 H 0.02 1.26 5.84 -2.39 -0.01 1.25 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.10 2.40 7.46 -2.39 -0.02 2.38 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.42 10.17 8.96 -92.71 -0.83 9.34 16 Total: -1.00 -71.08 322.64 2.47 -68.62 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.21 Total: 16.48 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 4.75 Total: 21.28 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -4.43 Total: -104.65 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.09 Total: -51.29 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -71.08 2.47 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.680 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds