Wall clock time and date at job start Mon Mar 30 2020 00:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33086 * 120.00275 * 2 1 4 4 C 1.50692 * 120.00329 * 195.79123 * 3 2 1 5 5 N 1.46897 * 109.47501 * 128.96313 * 4 3 2 6 6 C 1.46964 * 110.99895 * 293.80014 * 5 4 3 7 7 C 1.53049 * 109.36406 * 176.81171 * 6 5 4 8 8 N 1.46955 * 109.36536 * 58.39892 * 7 6 5 9 9 C 1.46907 * 110.99707 * 176.81238 * 8 7 6 10 10 C 1.50700 * 109.47013 * 293.79685 * 9 8 7 11 11 H 1.07996 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99809 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99752 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47401 * 59.99916 * 14 12 10 16 16 H 1.48504 * 109.47017 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47216 * 299.99591 * 14 12 10 18 18 C 1.46955 * 110.88078 * 300.67595 * 8 7 6 19 19 C 1.46952 * 111.00330 * 169.99545 * 5 4 3 20 20 C 1.46954 * 120.00085 * 180.02562 * 2 1 3 21 21 O 1.21531 * 119.99996 * 187.47619 * 20 2 1 22 22 O 1.34800 * 120.00068 * 7.47011 * 20 2 1 23 23 H 1.09002 * 109.47130 * 90.00075 * 1 2 3 24 24 H 1.09001 * 109.46914 * 209.99151 * 1 2 3 25 25 H 1.08991 * 109.47442 * 329.99800 * 1 2 3 26 26 H 1.08006 * 119.99393 * 15.78492 * 3 2 1 27 27 H 1.08998 * 109.47005 * 248.96313 * 4 3 2 28 28 H 1.08996 * 109.47238 * 8.95883 * 4 3 2 29 29 H 1.09004 * 109.48336 * 296.77537 * 6 5 4 30 30 H 1.08997 * 109.48937 * 56.83750 * 6 5 4 31 31 H 1.09007 * 109.48752 * 298.42978 * 7 6 5 32 32 H 1.08997 * 109.48354 * 178.36682 * 7 6 5 33 33 H 1.09002 * 109.47215 * 53.79735 * 9 8 7 34 34 H 1.08998 * 109.46701 * 173.79618 * 9 8 7 35 35 H 0.96991 * 120.00161 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.49272 * 299.35818 * 18 8 7 37 37 H 1.09001 * 109.48660 * 179.28813 * 18 8 7 38 38 H 1.08995 * 109.49521 * 303.15797 * 19 5 4 39 39 H 1.09007 * 109.48722 * 63.22156 * 19 5 4 40 40 H 0.96694 * 116.99850 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6367 1.1772 -0.3551 5 7 3.8731 2.1944 -1.3882 6 6 3.2167 1.8255 -2.6504 7 6 3.4193 2.9453 -3.6739 8 7 4.8580 3.1657 -3.8766 9 6 5.0942 4.1830 -4.9098 10 6 4.6231 3.6632 -6.2435 11 1 4.1910 2.6761 -6.3163 12 6 4.7437 4.4478 -7.3708 13 7 5.2695 5.6500 -7.2821 14 14 4.1590 3.8037 -9.0239 15 1 2.7072 3.5004 -8.9516 16 1 4.3980 4.8320 -10.0684 17 1 4.9067 2.5671 -9.3659 18 6 5.5143 3.5346 -2.6145 19 6 5.3117 2.4149 -1.5910 20 6 2.2418 -1.2727 -0.0006 21 8 3.4493 -1.2772 0.1364 22 8 1.5764 -2.4350 -0.1529 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6629 2.0702 0.2545 27 1 4.2218 1.4180 0.5324 28 1 3.9355 0.1994 -0.7329 29 1 3.6530 0.9019 -3.0307 30 1 2.1505 1.6800 -2.4768 31 1 2.9592 3.8623 -3.3055 32 1 2.9581 2.6611 -4.6197 33 1 4.5448 5.0903 -4.6587 34 1 6.1598 4.4064 -4.9627 35 1 5.3546 6.2018 -8.0752 36 1 5.0781 4.4583 -2.2341 37 1 6.5805 3.6801 -2.7881 38 1 5.7730 2.6989 -0.6452 39 1 5.7718 1.4979 -1.9593 40 1 2.1027 -3.2462 -0.1470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833381414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:47 Heat of formation + Delta-G solvation = -56.512167 kcal Electronic energy + Delta-G solvation = -20691.754725 eV Core-core repulsion = 17507.174583 eV Total energy + Delta-G solvation = -3184.580142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56620 -38.73831 -36.64476 -35.61129 -34.29927 -32.42801 -30.42309 -29.60825 -27.33262 -25.41934 -24.52029 -23.19087 -22.44656 -21.27024 -19.80304 -19.06503 -18.08672 -16.30639 -16.10809 -16.06653 -15.54001 -14.78179 -14.60587 -14.31173 -14.20176 -13.86291 -13.60454 -13.42576 -13.20214 -12.95263 -12.62312 -12.32212 -12.02674 -11.92554 -11.60571 -11.54047 -11.12732 -10.86356 -10.73273 -10.62267 -10.41552 -10.30892 -10.25941 -9.69847 -9.30754 -9.15999 -8.41905 -8.05275 -7.19951 -6.00985 -4.02473 0.86929 2.66507 2.91416 3.34326 3.38285 3.41298 4.11643 4.43688 4.62187 4.82378 4.98036 5.08091 5.27323 5.34260 5.36700 5.43810 5.50702 5.54533 5.60889 5.80734 5.84477 5.89746 5.93453 6.01912 6.07761 6.20448 6.23652 6.43442 6.47607 6.62311 6.70128 7.20262 7.23531 7.37132 7.39915 7.70393 7.81697 8.11444 8.23431 8.57646 9.04824 9.61651 11.09917 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.003966 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.359436 B = 7057.555433 C = 7590.078788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.185 4.185 3 C -0.025 4.025 4 C 0.047 3.953 5 N -0.539 5.539 6 C 0.058 3.942 7 C 0.068 3.932 8 N -0.539 5.539 9 C 0.194 3.806 10 C -0.508 4.508 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.057 3.943 19 C 0.064 3.936 20 C 0.516 3.484 21 O -0.510 6.510 22 O -0.514 6.514 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.139 0.861 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.086 0.914 33 H -0.008 1.008 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 -11.319 16.279 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.187 4.187 3 C -0.044 4.044 4 C -0.080 4.080 5 N -0.265 5.265 6 C -0.070 4.070 7 C -0.060 4.060 8 N -0.264 5.264 9 C 0.069 3.931 10 C -0.546 4.546 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.072 4.072 19 C -0.064 4.064 20 C 0.363 3.637 21 O -0.401 6.401 22 O -0.326 6.326 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.157 0.843 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.010 0.990 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.845 -10.794 16.190 20.980 hybrid contribution 0.084 -0.709 -0.911 1.158 sum -7.761 -11.504 15.279 20.640 Atomic orbital electron populations 1.20673 0.89493 1.02974 1.02886 1.20707 0.96958 0.89499 1.11495 1.23832 0.96699 0.96673 0.87201 1.21865 0.92818 0.96787 0.96507 1.62090 1.12556 1.43928 1.07895 1.22267 0.97807 0.98023 0.88892 1.21980 0.90378 0.96000 0.97678 1.62276 1.09918 1.47976 1.06257 1.19700 0.96842 0.87915 0.88681 1.21120 1.40123 1.01503 0.91890 0.92018 1.24983 0.95506 0.94865 0.99200 1.69948 1.45075 1.09239 1.29594 0.86567 0.79177 0.78478 0.83213 1.20285 1.21348 1.20201 1.22071 0.99424 0.95405 0.90324 1.22134 0.87033 0.98739 0.98523 1.21233 0.85360 0.84692 0.72436 1.90830 1.15556 1.87412 1.46336 1.84624 1.45595 1.17349 1.84998 0.90749 0.91353 0.91214 0.84284 0.89343 0.89999 0.94468 0.91423 0.95305 0.89609 0.99050 0.95220 0.92877 0.95111 0.90956 0.91118 0.94184 0.73204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.81 36.01 0.35 -0.45 16 2 C -0.18 -1.88 5.97 -102.89 -0.61 -2.49 16 3 C -0.03 -0.27 8.24 -36.10 -0.30 -0.57 16 4 C 0.05 0.61 4.54 -4.98 -0.02 0.59 16 5 N -0.54 -8.24 4.70 -235.92 -1.11 -9.35 16 6 C 0.06 0.96 5.44 -3.76 -0.02 0.94 16 7 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 8 N -0.54 -12.00 4.70 -235.90 -1.11 -13.11 16 9 C 0.19 5.14 4.72 -4.97 -0.02 5.12 16 10 C -0.51 -14.40 8.47 -34.44 -0.29 -14.69 16 11 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 14 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 19 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 20 C 0.52 5.79 8.01 34.26 0.27 6.06 16 21 O -0.51 -7.04 14.12 -19.29 -0.27 -7.31 16 22 O -0.51 -4.38 12.79 -40.76 -0.52 -4.90 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.50 7.80 -51.93 -0.40 0.09 16 25 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 26 H 0.14 1.27 8.03 -52.48 -0.42 0.85 16 27 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 28 H 0.08 1.22 4.94 -52.13 -0.26 0.97 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.99 7.20 -51.93 -0.37 0.61 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 34 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 38 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.41 1.78 9.11 45.56 0.42 2.20 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -32.48 326.13 -8.71 -41.19 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.53 Total: -1.37 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.80 Total: -0.61 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.48 Total: -48.65 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.79 Total: -12.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.48 -8.71 -41.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833381414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.320 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds