Wall clock time and date at job start Mon Mar 30 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33086 * 120.00275 * 2 1 4 4 C 1.50692 * 120.00329 * 195.79123 * 3 2 1 5 5 N 1.46897 * 109.47501 * 128.96313 * 4 3 2 6 6 C 1.46964 * 110.99895 * 293.80014 * 5 4 3 7 7 C 1.53049 * 109.36406 * 176.81171 * 6 5 4 8 8 N 1.46955 * 109.36536 * 58.39892 * 7 6 5 9 9 C 1.46907 * 110.99707 * 176.81238 * 8 7 6 10 10 C 1.50700 * 109.47013 * 293.79685 * 9 8 7 11 11 H 1.07996 * 120.00012 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99809 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99752 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47401 * 59.99916 * 14 12 10 16 16 H 1.48504 * 109.47017 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47216 * 299.99591 * 14 12 10 18 18 C 1.46955 * 110.88078 * 300.67595 * 8 7 6 19 19 C 1.46952 * 111.00330 * 169.99545 * 5 4 3 20 20 C 1.46954 * 120.00085 * 180.02562 * 2 1 3 21 21 O 1.21531 * 119.99996 * 187.47619 * 20 2 1 22 22 O 1.34800 * 120.00068 * 7.47011 * 20 2 1 23 23 H 1.09002 * 109.47130 * 90.00075 * 1 2 3 24 24 H 1.09001 * 109.46914 * 209.99151 * 1 2 3 25 25 H 1.08991 * 109.47442 * 329.99800 * 1 2 3 26 26 H 1.08006 * 119.99393 * 15.78492 * 3 2 1 27 27 H 1.08998 * 109.47005 * 248.96313 * 4 3 2 28 28 H 1.08996 * 109.47238 * 8.95883 * 4 3 2 29 29 H 1.09004 * 109.48336 * 296.77537 * 6 5 4 30 30 H 1.08997 * 109.48937 * 56.83750 * 6 5 4 31 31 H 1.09007 * 109.48752 * 298.42978 * 7 6 5 32 32 H 1.08997 * 109.48354 * 178.36682 * 7 6 5 33 33 H 1.09002 * 109.47215 * 53.79735 * 9 8 7 34 34 H 1.08998 * 109.46701 * 173.79618 * 9 8 7 35 35 H 0.96991 * 120.00161 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.49272 * 299.35818 * 18 8 7 37 37 H 1.09001 * 109.48660 * 179.28813 * 18 8 7 38 38 H 1.08995 * 109.49521 * 303.15797 * 19 5 4 39 39 H 1.09007 * 109.48722 * 63.22156 * 19 5 4 40 40 H 0.96694 * 116.99850 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 3.6367 1.1772 -0.3551 5 7 3.8731 2.1944 -1.3882 6 6 3.2167 1.8255 -2.6504 7 6 3.4193 2.9453 -3.6739 8 7 4.8580 3.1657 -3.8766 9 6 5.0942 4.1830 -4.9098 10 6 4.6231 3.6632 -6.2435 11 1 4.1910 2.6761 -6.3163 12 6 4.7437 4.4478 -7.3708 13 7 5.2695 5.6500 -7.2821 14 14 4.1590 3.8037 -9.0239 15 1 2.7072 3.5004 -8.9516 16 1 4.3980 4.8320 -10.0684 17 1 4.9067 2.5671 -9.3659 18 6 5.5143 3.5346 -2.6145 19 6 5.3117 2.4149 -1.5910 20 6 2.2418 -1.2727 -0.0006 21 8 3.4493 -1.2772 0.1364 22 8 1.5764 -2.4350 -0.1529 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.6629 2.0702 0.2545 27 1 4.2218 1.4180 0.5324 28 1 3.9355 0.1994 -0.7329 29 1 3.6530 0.9019 -3.0307 30 1 2.1505 1.6800 -2.4768 31 1 2.9592 3.8623 -3.3055 32 1 2.9581 2.6611 -4.6197 33 1 4.5448 5.0903 -4.6587 34 1 6.1598 4.4064 -4.9627 35 1 5.3546 6.2018 -8.0752 36 1 5.0781 4.4583 -2.2341 37 1 6.5805 3.6801 -2.7881 38 1 5.7730 2.6989 -0.6452 39 1 5.7718 1.4979 -1.9593 40 1 2.1027 -3.2462 -0.1470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833381414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:46 Heat of formation + Delta-G solvation = -80.971068 kcal Electronic energy + Delta-G solvation = -20692.815342 eV Core-core repulsion = 17507.174583 eV Total energy + Delta-G solvation = -3185.640760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42397 -40.13275 -37.61511 -36.75200 -35.53095 -34.41425 -31.88781 -30.89719 -28.90876 -26.75876 -25.60098 -24.66006 -23.81685 -22.95609 -20.80437 -20.37001 -18.89598 -18.48732 -17.37800 -16.93029 -16.70361 -16.39522 -15.93848 -15.86033 -15.46182 -15.23088 -15.05257 -14.48512 -14.35431 -13.97155 -13.82770 -13.56632 -13.34918 -13.28274 -12.95902 -12.73456 -12.65407 -12.46320 -12.31684 -12.23268 -12.11446 -11.95518 -11.49603 -11.26801 -11.20270 -10.61554 -10.08763 -9.30771 -9.02937 -8.20825 -6.31550 0.04630 1.40894 1.44317 1.52306 1.84150 2.21935 2.40146 2.92927 3.11238 3.28991 3.77940 3.96424 4.11751 4.16001 4.17474 4.36276 4.40259 4.44224 4.56565 4.64184 4.72835 4.79969 4.82661 4.87979 4.96111 5.00364 5.03286 5.15783 5.21163 5.25721 5.27827 5.53481 5.63111 5.66004 5.96478 6.01547 6.07299 6.33578 6.61593 6.83849 6.98806 7.38274 8.90317 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025348 B = 0.003966 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.359436 B = 7057.555433 C = 7590.078788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.179 4.179 3 C -0.034 4.034 4 C 0.052 3.948 5 N -0.539 5.539 6 C 0.072 3.928 7 C 0.071 3.929 8 N -0.548 5.548 9 C 0.209 3.791 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.055 3.945 19 C 0.071 3.929 20 C 0.513 3.487 21 O -0.542 6.542 22 O -0.508 6.508 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.159 0.841 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.025 0.975 30 H 0.093 0.907 31 H 0.021 0.979 32 H 0.068 0.932 33 H -0.038 1.038 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.031 0.969 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 -12.629 16.919 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.182 4.182 3 C -0.053 4.053 4 C -0.074 4.074 5 N -0.265 5.265 6 C -0.056 4.056 7 C -0.058 4.058 8 N -0.273 5.273 9 C 0.083 3.917 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.195 1.195 18 C -0.073 4.073 19 C -0.057 4.057 20 C 0.361 3.639 21 O -0.436 6.436 22 O -0.321 6.321 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.177 0.823 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.087 0.913 33 H -0.020 1.020 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.050 0.950 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.418 -12.143 16.858 22.811 hybrid contribution 0.572 -0.355 -1.040 1.239 sum -8.845 -12.498 15.818 22.015 Atomic orbital electron populations 1.20723 0.87568 1.04144 1.03361 1.20974 0.98198 0.88849 1.10130 1.23830 0.95317 0.97827 0.88348 1.21808 0.94871 0.94993 0.95758 1.62095 1.11844 1.44885 1.07631 1.22085 0.99404 0.95576 0.88516 1.21958 0.88720 0.97010 0.98109 1.62207 1.11689 1.46270 1.07174 1.19350 0.94531 0.87878 0.89967 1.21409 1.40403 1.01626 0.92942 0.92033 1.25918 0.95333 0.94947 1.03324 1.70079 1.45984 1.10546 1.30888 0.85425 0.79129 0.77984 0.78016 1.19046 1.20716 1.19455 1.22156 0.99012 0.96597 0.89544 1.22067 0.87873 0.96999 0.98714 1.21526 0.85025 0.85671 0.71722 1.90823 1.16905 1.87965 1.47861 1.84586 1.45626 1.17663 1.84249 0.90469 0.90821 0.89493 0.82350 0.88533 0.91597 0.95665 0.88918 0.96033 0.91347 1.02006 0.97844 0.92613 0.95546 0.91020 0.88164 0.95040 0.71153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.81 71.24 0.70 -0.57 16 2 C -0.18 -3.20 5.97 -18.73 -0.11 -3.32 16 3 C -0.03 -0.65 8.24 24.53 0.20 -0.45 16 4 C 0.05 1.25 4.54 85.56 0.39 1.64 16 5 N -0.54 -15.65 4.70 -900.30 -4.23 -19.88 16 6 C 0.07 2.32 5.44 86.31 0.47 2.79 16 7 C 0.07 2.86 5.43 86.31 0.47 3.33 16 8 N -0.55 -24.98 4.70 -900.25 -4.23 -29.22 16 9 C 0.21 11.56 4.72 85.56 0.40 11.96 16 10 C -0.53 -30.45 8.47 25.60 0.22 -30.24 16 11 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 14 Si 0.97 44.66 29.54 68.60 2.03 46.68 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C 0.06 2.10 5.61 86.31 0.48 2.59 16 19 C 0.07 2.19 5.61 86.31 0.48 2.68 16 20 C 0.51 10.59 8.01 70.11 0.56 11.15 16 21 O -0.54 -14.39 14.12 19.73 0.28 -14.11 16 22 O -0.51 -7.56 12.79 -57.11 -0.73 -8.29 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.85 7.80 -2.39 -0.02 0.84 16 25 H 0.09 0.81 8.05 -2.39 -0.02 0.79 16 26 H 0.16 2.38 8.03 -2.91 -0.02 2.35 16 27 H 0.10 2.18 8.03 -2.39 -0.02 2.16 16 28 H 0.07 1.89 4.94 -5.53 -0.03 1.87 16 29 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 2.51 7.20 -2.39 -0.02 2.50 16 31 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 2.97 6.79 -2.39 -0.02 2.95 16 33 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 34 H 0.00 0.21 8.03 -2.39 -0.02 0.19 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 2.68 8.07 -2.39 -0.02 2.66 16 38 H 0.10 2.51 8.07 -2.39 -0.02 2.49 16 39 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.43 2.87 9.11 -74.06 -0.67 2.20 16 Total: -1.00 -70.78 326.13 -1.54 -72.32 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.34 Total: 7.07 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.73 Total: 2.19 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -8.18 Total: -105.86 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.45 Total: -22.40 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.78 -1.54 -72.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833381414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.650 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds