Wall clock time and date at job start Mon Mar 30 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33091 * 120.00351 * 2 1 4 4 C 1.50696 * 119.99845 * 353.91770 * 3 2 1 5 5 N 1.46895 * 109.47207 * 235.54433 * 4 3 2 6 6 C 1.46954 * 111.00310 * 293.79808 * 5 4 3 7 7 C 1.53049 * 109.36666 * 176.81187 * 6 5 4 8 8 N 1.46954 * 109.36749 * 58.40336 * 7 6 5 9 9 C 1.46895 * 111.00238 * 176.81097 * 8 7 6 10 10 C 1.50696 * 109.47271 * 293.79823 * 9 8 7 11 11 H 1.08001 * 120.00052 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00423 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00498 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47211 * 89.99806 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99815 * 14 12 10 17 17 H 1.48492 * 109.47113 * 329.99638 * 14 12 10 18 18 C 1.46954 * 110.87601 * 300.68132 * 8 7 6 19 19 C 1.46959 * 111.00030 * 169.99737 * 5 4 3 20 20 C 1.46950 * 119.99924 * 180.02562 * 2 1 3 21 21 O 1.21537 * 120.00198 * 179.97438 * 20 2 1 22 22 O 1.34803 * 120.00127 * 359.97438 * 20 2 1 23 23 H 1.08998 * 109.47284 * 85.14855 * 1 2 3 24 24 H 1.08999 * 109.46982 * 205.16042 * 1 2 3 25 25 H 1.09003 * 109.46450 * 325.15430 * 1 2 3 26 26 H 1.07999 * 120.00117 * 173.92456 * 3 2 1 27 27 H 1.09007 * 109.47117 * 355.54229 * 4 3 2 28 28 H 1.08997 * 109.47199 * 115.54494 * 4 3 2 29 29 H 1.08995 * 109.49219 * 296.78446 * 6 5 4 30 30 H 1.09004 * 109.48702 * 56.84648 * 6 5 4 31 31 H 1.09001 * 109.48730 * 298.43234 * 7 6 5 32 32 H 1.09002 * 109.48889 * 178.37403 * 7 6 5 33 33 H 1.08998 * 109.46927 * 53.80246 * 9 8 7 34 34 H 1.08996 * 109.47114 * 173.79805 * 9 8 7 35 35 H 0.97003 * 120.00087 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.49219 * 299.34559 * 18 8 7 37 37 H 1.09004 * 109.48702 * 179.28357 * 18 8 7 38 38 H 1.08992 * 109.49285 * 303.15942 * 19 5 4 39 39 H 1.09003 * 109.48684 * 63.22704 * 19 5 4 40 40 H 0.96696 * 116.99922 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 1.4254 2.4540 -0.1383 5 7 1.9641 3.2092 -1.2772 6 6 3.3489 3.6301 -1.0225 7 6 3.8986 4.3426 -2.2604 8 7 3.0489 5.4997 -2.5744 9 6 3.5876 6.2550 -3.7133 10 6 4.9049 6.8762 -3.3262 11 1 5.3024 6.7248 -2.3335 12 6 5.6032 7.6371 -4.2397 13 7 6.7530 8.1788 -3.9020 14 14 4.9161 7.8984 -5.9570 15 1 4.0636 9.1143 -5.9693 16 1 6.0357 8.0690 -6.9174 17 1 4.1027 6.7197 -6.3493 18 6 1.6642 5.0788 -2.8291 19 6 1.1143 4.3663 -1.5912 20 6 2.2417 -1.2726 -0.0006 21 8 3.4571 -1.2727 -0.0010 22 8 1.5677 -2.4401 -0.0006 23 1 -0.3634 0.0869 -1.0239 24 1 -0.3633 -0.9302 0.4369 25 1 -0.3632 0.8435 0.5872 26 1 3.2479 1.1551 0.0990 27 1 0.3677 2.2498 -0.3053 28 1 1.5429 3.0391 0.7738 29 1 3.3714 4.3105 -0.1713 30 1 3.9608 2.7547 -0.8050 31 1 3.9016 3.6537 -3.1052 32 1 4.9159 4.6811 -2.0634 33 1 3.7374 5.5818 -4.5574 34 1 2.8847 7.0392 -3.9944 35 1 7.2441 8.7144 -4.5446 36 1 1.6416 4.3984 -3.6803 37 1 1.0522 5.9542 -3.0466 38 1 0.0972 4.0278 -1.7882 39 1 1.1115 5.0552 -0.7464 40 1 2.0944 -3.2510 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833381415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:50 Heat of formation + Delta-G solvation = -60.314923 kcal Electronic energy + Delta-G solvation = -20402.217224 eV Core-core repulsion = 17217.472182 eV Total energy + Delta-G solvation = -3184.745042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39621 -39.01238 -36.61981 -36.07542 -34.36486 -32.38876 -30.59839 -29.46065 -27.67708 -26.36156 -24.54737 -23.29371 -22.48523 -21.06674 -19.31447 -18.76106 -18.04918 -17.10788 -16.76040 -15.98858 -15.70050 -15.06106 -14.49770 -14.43950 -14.41384 -14.02809 -13.67733 -13.53103 -13.28394 -13.12396 -12.52510 -12.26599 -12.07928 -11.93805 -11.80422 -11.61287 -11.46056 -10.95354 -10.84284 -10.77968 -10.56367 -10.39371 -10.09520 -9.83991 -9.45653 -9.27208 -8.57164 -8.27913 -7.38491 -6.05521 -4.03055 0.86788 2.66742 2.86815 3.28541 3.36138 3.38462 4.04339 4.41982 4.57117 4.70691 4.75615 4.91439 4.96616 5.19963 5.26621 5.33276 5.42524 5.45211 5.48054 5.65094 5.66949 5.72588 5.82121 5.94936 6.04007 6.14495 6.18705 6.23766 6.28391 6.47479 6.62411 6.82247 6.95745 7.05438 7.15681 7.58787 7.67270 7.89389 8.03475 8.65136 9.02245 9.56227 11.07520 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.003538 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.085073 B = 7911.678775 C = 8278.601994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.171 4.171 3 C -0.034 4.034 4 C 0.069 3.931 5 N -0.535 5.535 6 C 0.052 3.948 7 C 0.067 3.933 8 N -0.530 5.530 9 C 0.163 3.837 10 C -0.510 4.510 11 H 0.080 0.920 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.053 3.947 19 C 0.062 3.938 20 C 0.521 3.479 21 O -0.519 6.519 22 O -0.514 6.514 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.130 0.870 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.093 0.907 33 H -0.011 1.011 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -16.683 8.085 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.173 4.173 3 C -0.053 4.053 4 C -0.059 4.059 5 N -0.260 5.260 6 C -0.076 4.076 7 C -0.062 4.062 8 N -0.255 5.255 9 C 0.036 3.964 10 C -0.548 4.548 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.076 4.076 19 C -0.066 4.066 20 C 0.367 3.633 21 O -0.409 6.409 22 O -0.325 6.325 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.007 0.993 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -14.395 -16.185 8.003 23.091 hybrid contribution 0.223 -0.347 -0.991 1.073 sum -14.172 -16.532 7.012 22.876 Atomic orbital electron populations 1.20747 0.90019 1.03074 1.02885 1.20541 0.96879 0.89423 1.10469 1.23705 1.00977 0.92958 0.87647 1.21345 0.99071 0.91751 0.93699 1.62230 1.03256 1.23878 1.36613 1.22359 0.88209 0.98432 0.98558 1.22025 0.98351 0.90704 0.95085 1.62116 1.00205 1.21595 1.41546 1.20150 0.96222 0.92562 0.87421 1.21024 1.02373 1.30469 1.00958 0.90181 1.24898 0.94754 0.95342 0.98327 1.69891 1.14363 1.34213 1.35460 0.86859 0.78914 0.79017 0.84964 1.20161 1.21200 1.19262 1.22117 0.92150 0.97892 0.95413 1.22163 0.95716 0.90457 0.98223 1.21091 0.85601 0.84655 0.71982 1.90929 1.15224 1.88163 1.46555 1.84598 1.44998 1.16979 1.85966 0.90856 0.90885 0.91090 0.85207 0.89059 0.92622 0.93791 0.90767 0.95184 0.88850 0.99287 0.95808 0.92656 0.95010 0.90819 0.90904 0.93873 0.73118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 8.82 36.00 0.32 -0.52 16 2 C -0.17 -1.73 5.99 -102.89 -0.62 -2.35 16 3 C -0.03 -0.37 8.75 -36.10 -0.32 -0.68 16 4 C 0.07 0.71 5.05 -4.98 -0.03 0.69 16 5 N -0.53 -7.30 4.70 -235.92 -1.11 -8.41 16 6 C 0.05 0.80 5.44 -3.77 -0.02 0.78 16 7 C 0.07 1.29 5.43 -3.77 -0.02 1.27 16 8 N -0.53 -11.05 4.70 -235.92 -1.11 -12.16 16 9 C 0.16 3.96 3.79 -4.98 -0.02 3.94 16 10 C -0.51 -14.47 9.03 -34.44 -0.31 -14.78 16 11 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 14 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.05 0.90 5.61 -3.77 -0.02 0.88 16 19 C 0.06 0.84 5.61 -3.77 -0.02 0.82 16 20 C 0.52 5.83 8.25 34.26 0.28 6.11 16 21 O -0.52 -7.51 17.02 -19.29 -0.33 -7.84 16 22 O -0.51 -4.13 12.61 -40.77 -0.51 -4.64 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.51 7.54 -51.93 -0.39 0.12 16 25 H 0.07 0.44 6.69 -51.93 -0.35 0.10 16 26 H 0.13 1.56 6.36 -52.49 -0.33 1.23 16 27 H 0.09 0.79 5.65 -51.92 -0.29 0.50 16 28 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.05 6.54 -51.93 -0.34 0.71 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 33 H -0.01 -0.26 7.18 -51.93 -0.37 -0.64 16 34 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.41 1.55 9.11 45.56 0.42 1.96 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -33.39 322.40 -8.30 -41.68 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.33 Total: -1.60 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.87 Total: -1.95 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -1.44 Total: -47.38 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.84 Total: -12.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.39 -8.30 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833381415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.634 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds