Wall clock time and date at job start Mon Mar 30 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33091 * 120.00351 * 2 1 4 4 C 1.50696 * 119.99845 * 353.91770 * 3 2 1 5 5 N 1.46895 * 109.47207 * 235.54433 * 4 3 2 6 6 C 1.46954 * 111.00310 * 293.79808 * 5 4 3 7 7 C 1.53049 * 109.36666 * 176.81187 * 6 5 4 8 8 N 1.46954 * 109.36749 * 58.40336 * 7 6 5 9 9 C 1.46895 * 111.00238 * 176.81097 * 8 7 6 10 10 C 1.50696 * 109.47271 * 293.79823 * 9 8 7 11 11 H 1.08001 * 120.00052 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00423 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00498 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47211 * 89.99806 * 14 12 10 16 16 H 1.48498 * 109.46899 * 209.99815 * 14 12 10 17 17 H 1.48492 * 109.47113 * 329.99638 * 14 12 10 18 18 C 1.46954 * 110.87601 * 300.68132 * 8 7 6 19 19 C 1.46959 * 111.00030 * 169.99737 * 5 4 3 20 20 C 1.46950 * 119.99924 * 180.02562 * 2 1 3 21 21 O 1.21537 * 120.00198 * 179.97438 * 20 2 1 22 22 O 1.34803 * 120.00127 * 359.97438 * 20 2 1 23 23 H 1.08998 * 109.47284 * 85.14855 * 1 2 3 24 24 H 1.08999 * 109.46982 * 205.16042 * 1 2 3 25 25 H 1.09003 * 109.46450 * 325.15430 * 1 2 3 26 26 H 1.07999 * 120.00117 * 173.92456 * 3 2 1 27 27 H 1.09007 * 109.47117 * 355.54229 * 4 3 2 28 28 H 1.08997 * 109.47199 * 115.54494 * 4 3 2 29 29 H 1.08995 * 109.49219 * 296.78446 * 6 5 4 30 30 H 1.09004 * 109.48702 * 56.84648 * 6 5 4 31 31 H 1.09001 * 109.48730 * 298.43234 * 7 6 5 32 32 H 1.09002 * 109.48889 * 178.37403 * 7 6 5 33 33 H 1.08998 * 109.46927 * 53.80246 * 9 8 7 34 34 H 1.08996 * 109.47114 * 173.79805 * 9 8 7 35 35 H 0.97003 * 120.00087 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.49219 * 299.34559 * 18 8 7 37 37 H 1.09004 * 109.48702 * 179.28357 * 18 8 7 38 38 H 1.08992 * 109.49285 * 303.15942 * 19 5 4 39 39 H 1.09003 * 109.48684 * 63.22704 * 19 5 4 40 40 H 0.96696 * 116.99922 * 180.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1526 0.0000 4 6 1.4254 2.4540 -0.1383 5 7 1.9641 3.2092 -1.2772 6 6 3.3489 3.6301 -1.0225 7 6 3.8986 4.3426 -2.2604 8 7 3.0489 5.4997 -2.5744 9 6 3.5876 6.2550 -3.7133 10 6 4.9049 6.8762 -3.3262 11 1 5.3024 6.7248 -2.3335 12 6 5.6032 7.6371 -4.2397 13 7 6.7530 8.1788 -3.9020 14 14 4.9161 7.8984 -5.9570 15 1 4.0636 9.1143 -5.9693 16 1 6.0357 8.0690 -6.9174 17 1 4.1027 6.7197 -6.3493 18 6 1.6642 5.0788 -2.8291 19 6 1.1143 4.3663 -1.5912 20 6 2.2417 -1.2726 -0.0006 21 8 3.4571 -1.2727 -0.0010 22 8 1.5677 -2.4401 -0.0006 23 1 -0.3634 0.0869 -1.0239 24 1 -0.3633 -0.9302 0.4369 25 1 -0.3632 0.8435 0.5872 26 1 3.2479 1.1551 0.0990 27 1 0.3677 2.2498 -0.3053 28 1 1.5429 3.0391 0.7738 29 1 3.3714 4.3105 -0.1713 30 1 3.9608 2.7547 -0.8050 31 1 3.9016 3.6537 -3.1052 32 1 4.9159 4.6811 -2.0634 33 1 3.7374 5.5818 -4.5574 34 1 2.8847 7.0392 -3.9944 35 1 7.2441 8.7144 -4.5446 36 1 1.6416 4.3984 -3.6803 37 1 1.0522 5.9542 -3.0466 38 1 0.0972 4.0278 -1.7882 39 1 1.1115 5.0552 -0.7464 40 1 2.0944 -3.2510 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833381415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:50 Heat of formation + Delta-G solvation = -86.633450 kcal Electronic energy + Delta-G solvation = -20403.358481 eV Core-core repulsion = 17217.472182 eV Total energy + Delta-G solvation = -3185.886299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24306 -40.25802 -37.63908 -37.02996 -35.60539 -34.40680 -31.90061 -30.89982 -28.92276 -27.37111 -25.83779 -24.62531 -23.56023 -22.78562 -20.68284 -19.57297 -18.96069 -18.87039 -17.91877 -17.15895 -16.68907 -16.33949 -16.02404 -15.87555 -15.56418 -15.27794 -15.09669 -14.82190 -14.47365 -14.03173 -13.91574 -13.60808 -13.16886 -13.09793 -12.93881 -12.70234 -12.60852 -12.55687 -12.25320 -12.18131 -11.94013 -11.82088 -11.62043 -11.47771 -11.31323 -10.78705 -10.25468 -9.34571 -9.04135 -8.29205 -6.32900 0.03496 1.34216 1.36137 1.46808 1.84795 2.15170 2.33873 2.99774 3.03683 3.21629 3.81434 3.93830 3.96787 4.16234 4.21872 4.22052 4.33660 4.46381 4.48517 4.62121 4.65654 4.80316 4.85135 4.90017 4.92412 4.97516 5.00282 5.06458 5.09825 5.17682 5.34328 5.47563 5.51969 5.61539 5.90335 5.98218 6.09572 6.34853 6.64896 6.73086 6.95738 7.30943 8.87375 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032173 B = 0.003538 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.085073 B = 7911.678775 C = 8278.601994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.166 4.166 3 C -0.047 4.047 4 C 0.075 3.925 5 N -0.543 5.543 6 C 0.065 3.935 7 C 0.070 3.930 8 N -0.544 5.544 9 C 0.173 3.827 10 C -0.518 4.518 11 H 0.037 0.963 12 C 0.007 3.993 13 N -0.948 5.948 14 Si 0.949 3.051 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.254 1.254 18 C 0.049 3.951 19 C 0.068 3.932 20 C 0.521 3.479 21 O -0.561 6.561 22 O -0.503 6.503 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.056 0.944 33 H -0.016 1.016 34 H 0.032 0.968 35 H 0.267 0.733 36 H 0.029 0.971 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.043 0.957 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 -17.771 7.648 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.168 4.168 3 C -0.067 4.067 4 C -0.051 4.051 5 N -0.268 5.268 6 C -0.063 4.063 7 C -0.059 4.059 8 N -0.269 5.269 9 C 0.045 3.955 10 C -0.556 4.556 11 H 0.055 0.945 12 C -0.190 4.190 13 N -0.589 5.589 14 Si 0.772 3.228 15 H -0.186 1.186 16 H -0.208 1.208 17 H -0.178 1.178 18 C -0.079 4.079 19 C -0.059 4.059 20 C 0.368 3.632 21 O -0.454 6.454 22 O -0.316 6.316 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.001 0.999 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.061 0.939 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -17.859 -17.317 7.588 26.007 hybrid contribution 1.300 -0.126 -0.755 1.509 sum -16.559 -17.442 6.832 25.002 Atomic orbital electron populations 1.20818 0.87636 1.04322 1.03680 1.20807 0.98390 0.88595 1.09018 1.23616 1.00213 0.93756 0.89073 1.21397 1.00099 0.90783 0.92804 1.62184 1.02106 1.23970 1.38532 1.22121 0.90043 0.98157 0.95956 1.21916 0.96934 0.90310 0.96690 1.62036 1.02410 1.22394 1.40096 1.19908 0.94342 0.92825 0.88391 1.21258 1.04334 1.30691 0.99308 0.94485 1.25860 0.94954 0.94953 1.03224 1.70049 1.16077 1.35413 1.37331 0.85689 0.78479 0.79758 0.78849 1.18647 1.20776 1.17774 1.22284 0.89578 0.98757 0.97280 1.22170 0.97062 0.90241 0.96443 1.21388 0.85104 0.85784 0.70955 1.90918 1.17068 1.88829 1.48615 1.84557 1.44842 1.17152 1.85061 0.90191 0.90209 0.89253 0.87236 0.86243 0.91659 0.94257 0.89869 0.96084 0.92508 0.99875 0.95008 0.92405 0.95256 0.89726 0.87072 0.93881 0.70947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.82 71.23 0.63 -0.59 16 2 C -0.17 -3.00 5.99 -18.74 -0.11 -3.11 16 3 C -0.05 -0.95 8.75 24.53 0.21 -0.74 16 4 C 0.08 1.33 5.05 85.56 0.43 1.77 16 5 N -0.54 -13.58 4.70 -900.31 -4.23 -17.81 16 6 C 0.07 2.01 5.44 86.31 0.47 2.48 16 7 C 0.07 2.81 5.43 86.31 0.47 3.28 16 8 N -0.54 -22.78 4.70 -900.33 -4.23 -27.01 16 9 C 0.17 8.42 3.79 85.56 0.32 8.75 16 10 C -0.52 -30.45 9.03 25.60 0.23 -30.22 16 11 H 0.04 2.43 7.37 -2.91 -0.02 2.41 16 12 C 0.01 0.43 5.47 84.65 0.46 0.90 16 13 N -0.95 -59.96 13.96 21.45 0.30 -59.67 16 14 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 18 C 0.05 1.56 5.61 86.31 0.48 2.04 16 19 C 0.07 1.63 5.61 86.31 0.48 2.12 16 20 C 0.52 10.98 8.25 70.10 0.58 11.56 16 21 O -0.56 -16.25 17.02 19.71 0.34 -15.92 16 22 O -0.50 -6.99 12.61 -57.14 -0.72 -7.71 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 0.82 7.54 -2.39 -0.02 0.80 16 25 H 0.09 0.70 6.69 -2.39 -0.02 0.68 16 26 H 0.11 2.65 6.36 -2.91 -0.02 2.63 16 27 H 0.12 1.48 5.65 -2.38 -0.01 1.46 16 28 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.39 6.54 -2.38 -0.02 2.37 16 31 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 2.63 6.79 -2.39 -0.02 2.62 16 33 H -0.02 -0.81 7.18 -2.39 -0.02 -0.83 16 34 H 0.03 1.50 7.45 -2.39 -0.02 1.48 16 35 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 38 H 0.11 1.88 8.07 -2.39 -0.02 1.86 16 39 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.43 2.39 9.11 -74.06 -0.67 1.71 16 Total: -1.00 -75.06 322.40 -1.69 -76.75 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.31 Total: 6.72 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.67 Total: -1.78 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -8.16 Total: -104.49 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.39 Total: -23.63 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -75.06 -1.69 -76.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833381415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.878 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds