Wall clock time and date at job start Mon Mar 30 2020 01:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42891 * 114.00289 * 2 1 4 4 C 1.50693 * 109.47401 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00250 * 179.97438 * 4 3 2 6 6 C 1.32999 * 119.99886 * 359.97438 * 4 3 2 7 7 C 1.47097 * 120.00027 * 186.08436 * 6 4 3 8 8 O 1.21612 * 120.00325 * 5.55796 * 7 6 4 9 9 N 1.34781 * 119.99751 * 185.55428 * 7 6 4 10 10 C 1.46969 * 120.58841 * 175.36651 * 9 7 6 11 11 C 1.53814 * 108.39466 * 124.76393 * 10 9 7 12 12 N 1.46956 * 108.58186 * 49.63083 * 11 10 9 13 13 C 1.36941 * 120.59307 * 124.62981 * 12 11 10 14 14 H 1.07996 * 120.00219 * 192.83866 * 13 12 11 15 15 C 1.38814 * 119.99907 * 12.83381 * 13 12 11 16 16 N 1.31616 * 120.00144 * 221.63640 * 15 13 12 17 17 Si 1.86800 * 119.99910 * 41.63485 * 15 13 12 18 18 H 1.48507 * 109.47066 * 95.31255 * 17 15 13 19 19 H 1.48502 * 109.47210 * 215.30930 * 17 15 13 20 20 H 1.48497 * 109.47364 * 335.31375 * 17 15 13 21 21 C 1.46968 * 118.81514 * 304.64652 * 12 11 10 22 22 C 1.46956 * 120.59367 * 355.64717 * 9 7 6 23 23 H 1.08995 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46488 * 299.99900 * 1 2 3 25 25 H 1.09002 * 109.47119 * 59.99785 * 1 2 3 26 26 H 1.08998 * 109.47592 * 59.99916 * 3 2 1 27 27 H 1.09000 * 109.47220 * 300.00076 * 3 2 1 28 28 H 1.09002 * 109.46813 * 96.20969 * 5 4 3 29 29 H 1.08999 * 109.46939 * 216.20849 * 5 4 3 30 30 H 1.08999 * 109.47212 * 336.21037 * 5 4 3 31 31 H 1.08004 * 119.99854 * 6.08974 * 6 4 3 32 32 H 1.09004 * 109.60728 * 244.53711 * 10 9 7 33 33 H 1.08989 * 109.61449 * 5.05214 * 10 9 7 34 34 H 1.09003 * 109.73505 * 289.84162 * 11 10 9 35 35 H 1.09004 * 109.53324 * 169.30587 * 11 10 9 36 36 H 0.96997 * 120.00443 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.61029 * 295.48610 * 21 12 11 38 38 H 1.08997 * 109.74704 * 175.05207 * 21 12 11 39 39 H 1.08994 * 109.61531 * 354.94899 * 22 9 7 40 40 H 1.09003 * 109.61207 * 115.46142 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.3668 2.4279 -0.0013 6 6 4.0845 -0.0144 -0.0006 7 6 5.5445 -0.1336 0.1338 8 8 6.2185 0.8562 0.3461 9 7 6.1352 -1.3399 0.0218 10 6 7.5995 -1.4612 0.0526 11 6 7.9811 -2.4540 1.1638 12 7 7.1727 -3.6707 1.0026 13 6 7.7729 -4.8961 0.8879 14 1 7.1975 -5.7512 0.5651 15 6 9.1210 -5.0394 1.1864 16 7 9.8895 -5.7832 0.4194 17 14 9.8444 -4.1762 2.6767 18 1 9.8601 -5.1107 3.8308 19 1 11.2316 -3.7422 2.3724 20 1 9.0167 -2.9897 3.0118 21 6 5.7085 -3.5486 0.9662 22 6 5.3268 -2.5565 -0.1394 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 1.6888 1.8463 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 4.6648 2.6644 1.0201 29 1 5.2556 2.2570 -0.6088 30 1 3.7979 3.2601 -0.4158 31 1 3.4770 -0.9019 -0.0993 32 1 7.9563 -1.8298 -0.9092 33 1 8.0430 -0.4878 0.2615 34 1 7.7824 -2.0093 2.1389 35 1 9.0389 -2.7040 1.0817 36 1 10.8314 -5.8836 0.6281 37 1 5.3481 -3.1818 1.9272 38 1 5.2631 -4.5207 0.7552 39 1 4.2691 -2.3065 -0.0573 40 1 5.5255 -3.0013 -1.1145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845575854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:17 Heat of formation + Delta-G solvation = -11.453324 kcal Electronic energy + Delta-G solvation = -21064.609649 eV Core-core repulsion = 17881.983405 eV Total energy + Delta-G solvation = -3182.626244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.85514 -38.36334 -37.11133 -34.53552 -33.93238 -31.49347 -30.78405 -28.25452 -28.01391 -26.62283 -25.66743 -23.63817 -23.20913 -21.22278 -19.63673 -17.93373 -17.40738 -16.53692 -16.35849 -16.20041 -15.49628 -15.10656 -14.83262 -14.59642 -14.21034 -13.72786 -13.55084 -13.41343 -13.02986 -12.80037 -12.55424 -12.32490 -12.18052 -11.97259 -11.90279 -11.74884 -11.37937 -10.84898 -10.78307 -10.33832 -10.23136 -10.15562 -10.09246 -9.38750 -9.13087 -9.07478 -8.68519 -8.08035 -7.13497 -6.06230 -3.13602 1.45167 3.37870 3.39907 3.45870 3.52924 3.57004 3.59830 4.55762 4.59344 4.83212 4.90069 4.97722 5.03844 5.05855 5.14857 5.21676 5.33703 5.40155 5.55843 5.64597 5.68937 5.82481 5.82672 5.96219 6.13741 6.19306 6.22276 6.29807 6.42773 6.50299 6.54663 6.60421 6.83178 6.89302 7.04098 7.82833 7.89381 8.21256 8.56579 8.88143 9.71343 10.07984 11.05916 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029903 B = 0.004638 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.123533 B = 6035.792371 C = 6597.660422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.095 3.905 4 C -0.062 4.062 5 C -0.115 4.115 6 C -0.195 4.195 7 C 0.538 3.462 8 O -0.555 6.555 9 N -0.594 5.594 10 C 0.092 3.908 11 C 0.136 3.864 12 N -0.601 5.601 13 C -0.277 4.277 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.872 5.872 17 Si 0.821 3.179 18 H -0.295 1.295 19 H -0.293 1.293 20 H -0.255 1.255 21 C 0.136 3.864 22 C 0.087 3.913 23 H 0.089 0.911 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.262 0.738 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.262 13.519 -2.232 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.018 3.982 4 C -0.064 4.064 5 C -0.171 4.171 6 C -0.216 4.216 7 C 0.329 3.671 8 O -0.437 6.437 9 N -0.326 5.326 10 C -0.032 4.032 11 C 0.010 3.990 12 N -0.324 5.324 13 C -0.403 4.403 14 H 0.106 0.894 15 C -0.165 4.165 16 N -0.511 5.511 17 Si 0.648 3.352 18 H -0.224 1.224 19 H -0.219 1.219 20 H -0.180 1.180 21 C 0.009 3.991 22 C -0.037 4.037 23 H 0.107 0.893 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.617 13.712 -2.182 21.654 hybrid contribution 0.275 0.314 0.983 1.068 sum -16.342 14.026 -1.200 21.569 Atomic orbital electron populations 1.22763 0.80641 1.03113 0.99945 1.87896 1.19893 1.27311 1.95474 1.21398 0.90585 0.85205 1.00972 1.22287 0.93557 0.96058 0.94545 1.21022 0.99235 0.92973 1.03837 1.22584 0.93894 0.99042 1.06033 1.18576 0.88307 0.82842 0.77350 1.90690 1.66168 1.36280 1.50581 1.47934 1.07714 1.06287 1.70620 1.22425 0.78984 1.00791 1.01032 1.21760 0.96119 0.86488 0.94663 1.44338 1.00076 1.02917 1.85110 1.18792 0.93214 0.87200 1.41105 0.89416 1.24850 0.95263 0.97165 0.99223 1.70228 1.05220 1.41843 1.33858 0.87974 0.78586 0.80625 0.88057 1.22374 1.21950 1.18005 1.21254 0.85361 0.97398 0.95086 1.22472 0.94525 0.85658 1.01050 0.89299 0.93989 0.94002 0.91348 0.91639 0.90450 0.88675 0.93140 0.84263 0.91244 0.89784 0.95003 0.90788 0.92819 0.95591 0.90720 0.89991 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.04 9.13 -35.23 -0.32 -4.37 16 3 C 0.09 0.88 6.32 36.00 0.23 1.11 16 4 C -0.06 -0.76 6.11 -101.17 -0.62 -1.38 16 5 C -0.11 -1.37 8.49 36.01 0.31 -1.06 16 6 C -0.20 -2.80 8.68 -37.81 -0.33 -3.13 16 7 C 0.54 9.46 7.51 -12.66 -0.10 9.37 16 8 O -0.56 -10.81 12.65 5.27 0.07 -10.74 16 9 N -0.59 -10.86 2.94 -173.61 -0.51 -11.38 16 10 C 0.09 1.82 6.63 -3.36 -0.02 1.80 16 11 C 0.14 3.09 4.51 -3.37 -0.02 3.08 16 12 N -0.60 -14.27 2.89 -171.77 -0.50 -14.77 16 13 C -0.28 -7.58 9.95 -15.06 -0.15 -7.73 16 14 H 0.09 2.50 7.96 -52.49 -0.42 2.09 16 15 C 0.04 1.02 4.91 -17.43 -0.09 0.94 16 16 N -0.87 -26.11 13.97 55.49 0.78 -25.33 16 17 Si 0.82 21.03 26.07 -169.99 -4.43 16.60 16 18 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 19 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.26 -6.29 4.80 56.52 0.27 -6.01 16 21 C 0.14 2.61 6.67 -3.59 -0.02 2.59 16 22 C 0.09 1.44 6.48 -3.60 -0.02 1.42 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 29 H 0.09 1.36 6.09 -51.93 -0.32 1.05 16 30 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.14 1.88 4.73 -52.48 -0.25 1.63 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.63 6.99 -51.94 -0.36 1.27 16 34 H 0.03 0.75 7.06 -51.93 -0.37 0.38 16 35 H 0.07 1.79 4.38 -51.93 -0.23 1.57 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 39 H 0.08 1.12 5.33 -51.93 -0.28 0.84 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 313.91 15.07 4.73 4.73 Total: -1.00 -32.24 313.91 -6.01 -38.26 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.11 Total: -1.33 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 0.28 Total: 8.33 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.23 Total: -51.48 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.26 Total: -15.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.43 Total: 16.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.24 -6.01 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845575854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.802 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds