Wall clock time and date at job start Mon Mar 30 2020 01:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99603 * 2 1 4 4 C 1.50691 * 120.00403 * 180.02562 * 2 1 3 5 5 O 1.42898 * 109.47020 * 359.97438 * 4 2 1 6 6 N 1.41607 * 114.00212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00417 * 179.97438 * 6 5 4 8 8 O 1.21589 * 119.99736 * 5.06988 * 7 6 5 9 9 N 1.34774 * 120.00635 * 185.06773 * 7 6 5 10 10 C 1.46928 * 120.62367 * 354.97132 * 9 7 6 11 11 C 1.53193 * 108.77828 * 126.41213 * 10 9 7 12 12 C 1.53048 * 109.30993 * 54.62937 * 11 10 9 13 13 C 1.53039 * 109.53763 * 298.63632 * 12 11 10 14 14 H 1.09001 * 109.50017 * 301.41326 * 13 12 11 15 15 C 1.50704 * 109.49593 * 181.35012 * 13 12 11 16 16 H 1.07999 * 119.99826 * 0.06436 * 15 13 12 17 17 C 1.37872 * 119.99780 * 180.02562 * 15 13 12 18 18 N 1.31516 * 120.00347 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99697 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46553 * 90.00324 * 19 17 15 21 21 H 1.48499 * 109.47033 * 209.99912 * 19 17 15 22 22 H 1.48500 * 109.47042 * 330.00378 * 19 17 15 23 23 C 1.46995 * 120.62103 * 174.98709 * 9 7 6 24 24 H 1.08000 * 120.00782 * 359.97438 * 1 2 3 25 25 H 1.08010 * 119.99544 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46770 * 240.00137 * 3 2 1 27 27 H 1.08998 * 109.47105 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47152 * 120.00258 * 3 2 1 29 29 H 1.09005 * 109.47404 * 240.00111 * 4 2 1 30 30 H 1.09001 * 109.47909 * 119.99616 * 4 2 1 31 31 H 0.97001 * 120.00045 * 0.02562 * 6 5 4 32 32 H 1.08999 * 109.59128 * 6.61801 * 10 9 7 33 33 H 1.09004 * 109.58242 * 246.19807 * 10 9 7 34 34 H 1.09001 * 109.49842 * 294.68234 * 11 10 9 35 35 H 1.09000 * 109.50167 * 174.58264 * 11 10 9 36 36 H 1.09004 * 109.45925 * 178.61340 * 12 11 10 37 37 H 1.09001 * 109.44497 * 58.65548 * 12 11 10 38 38 H 0.97001 * 119.99628 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.57890 * 113.80699 * 23 9 7 40 40 H 1.09000 * 109.62340 * 353.35931 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 8 1.1350 -2.3912 -0.0005 6 7 1.7440 -3.6696 -0.0016 7 6 0.9802 -4.7799 -0.0011 8 8 -0.2286 -4.6863 -0.0927 9 7 1.5561 -5.9942 0.1010 10 6 3.0190 -6.1309 0.1018 11 6 3.4390 -6.9288 1.3403 12 6 2.6832 -8.2594 1.3654 13 6 1.1787 -7.9918 1.4504 14 1 0.9625 -7.4115 2.3474 15 6 0.4373 -9.3026 1.5086 16 1 0.9842 -10.2337 1.4881 17 6 -0.9390 -9.3130 1.5887 18 7 -1.6050 -8.1792 1.6139 19 14 -1.8581 -10.9378 1.6600 20 1 -2.0204 -11.3528 3.0766 21 1 -3.1955 -10.7779 1.0348 22 1 -1.0890 -11.9743 0.9256 23 6 0.7325 -7.2065 0.2132 24 1 -0.5401 0.9352 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 2.6901 1.3629 -0.8901 27 1 1.3550 2.1336 -0.0005 28 1 2.6901 1.3629 0.8899 29 1 2.6902 -1.3631 0.8894 30 1 2.6902 -1.3624 -0.8906 31 1 2.7110 -3.7462 -0.0019 32 1 3.4785 -5.1429 0.1305 33 1 3.3372 -6.6581 -0.7977 34 1 3.2015 -6.3585 2.2383 35 1 4.5114 -7.1202 1.3034 36 1 2.9984 -8.8398 2.2326 37 1 2.9019 -8.8182 0.4555 38 1 -2.5733 -8.1867 1.6706 39 1 0.8642 -7.8213 -0.6771 40 1 -0.3164 -6.9282 0.3158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854218367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:44 Heat of formation + Delta-G solvation = -23.024818 kcal Electronic energy + Delta-G solvation = -20848.173856 eV Core-core repulsion = 17665.045835 eV Total energy + Delta-G solvation = -3183.128022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.23794 -39.18679 -38.17839 -36.10672 -35.35476 -33.74427 -32.40959 -31.32987 -28.08836 -27.51998 -26.93645 -25.93764 -23.45508 -22.05933 -20.74181 -19.87396 -19.06379 -18.76597 -18.07788 -16.98396 -16.73897 -16.33880 -16.09894 -15.95532 -15.20885 -15.15612 -14.81053 -14.46569 -14.27858 -14.14260 -13.81726 -13.55454 -13.51267 -12.87032 -12.70593 -12.48794 -12.37249 -12.24347 -12.22780 -12.20962 -11.86032 -11.62360 -11.29466 -10.96294 -10.84461 -10.49908 -10.20475 -9.95498 -9.32893 -8.08363 -6.25914 0.57654 1.18757 1.42607 1.43811 1.54511 2.15180 2.42966 2.61081 3.20477 3.47788 3.75986 4.01076 4.15565 4.19225 4.23056 4.29424 4.30590 4.61467 4.68355 4.72716 4.80982 4.83798 4.86031 4.97345 5.13281 5.13773 5.23381 5.28960 5.32063 5.55402 5.57629 5.58347 5.64513 5.80536 5.93506 6.03626 6.12768 6.36425 6.87333 6.97796 7.44497 7.62469 8.94863 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.004251 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.983791 B = 6584.421864 C = 7381.342980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.105 4.105 4 C 0.056 3.944 5 O -0.160 6.160 6 N -0.600 5.600 7 C 0.710 3.290 8 O -0.630 6.630 9 N -0.615 5.615 10 C 0.106 3.894 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.037 3.963 14 H -0.014 1.014 15 C -0.534 4.534 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.260 1.260 23 C 0.144 3.856 24 H 0.121 0.879 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.420 0.580 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.042 0.958 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.668 13.994 -3.876 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 C -0.162 4.162 4 C -0.020 4.020 5 O -0.165 6.165 6 N -0.310 5.310 7 C 0.412 3.588 8 O -0.510 6.510 9 N -0.355 5.355 10 C -0.015 4.015 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.018 3.982 14 H 0.004 0.996 15 C -0.572 4.572 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.555 5.555 19 Si 0.784 3.216 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.184 1.184 23 C 0.022 3.978 24 H 0.139 0.861 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.266 0.734 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.445 14.188 -3.931 20.625 hybrid contribution -0.763 -0.732 0.227 1.081 sum 13.682 13.456 -3.703 19.544 Atomic orbital electron populations 1.23842 0.96247 1.02041 1.00789 1.21761 0.95498 0.94579 1.01736 1.20814 1.00466 0.91280 1.03642 1.22044 0.92675 0.83698 1.03567 1.90573 1.24746 1.03410 1.97724 1.46001 1.07307 0.94752 1.82931 1.15627 0.84510 0.80304 0.78332 1.90896 1.15192 1.85813 1.59103 1.47635 1.08420 1.03587 1.75832 1.21995 0.77825 1.01690 1.00024 1.21929 1.01312 0.96011 0.97175 1.21510 0.94623 0.96934 1.01194 1.18944 0.93223 0.93913 0.92130 0.99582 1.21532 0.91784 0.93216 1.50716 0.91648 1.25934 0.99091 0.99482 0.94674 1.70108 1.07558 1.27355 1.50490 0.85550 0.77721 0.80072 0.78288 1.20157 1.21588 1.18367 1.21716 0.96148 0.81942 0.97980 0.86089 0.90820 0.89877 0.90487 0.90026 0.89122 0.88777 0.73374 0.88266 0.89326 0.93107 0.87263 0.92806 0.92067 0.93219 0.93998 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 13.68 67.78 0.93 -3.74 16 2 C -0.13 -2.66 6.05 -16.49 -0.10 -2.75 16 3 C -0.11 -1.20 10.12 71.24 0.72 -0.48 16 4 C 0.06 1.16 6.64 71.23 0.47 1.63 16 5 O -0.16 -5.37 9.51 -21.51 -0.20 -5.58 16 6 N -0.60 -19.57 6.30 -184.75 -1.16 -20.74 16 7 C 0.71 31.67 8.44 179.06 1.51 33.18 16 8 O -0.63 -36.31 16.19 13.30 0.22 -36.09 16 9 N -0.62 -25.08 2.97 -836.75 -2.49 -27.57 16 10 C 0.11 2.82 6.43 86.36 0.56 3.38 16 11 C -0.13 -3.46 6.08 30.67 0.19 -3.27 16 12 C -0.10 -3.89 5.11 30.62 0.16 -3.74 16 13 C 0.04 1.88 2.25 -11.46 -0.03 1.85 16 14 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 15 C -0.53 -29.39 8.56 25.60 0.22 -29.17 16 16 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.01 0.43 5.30 84.65 0.45 0.88 16 18 N -0.92 -57.05 11.40 21.45 0.24 -56.81 16 19 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.14 7.32 5.39 86.35 0.47 7.79 16 24 H 0.12 2.31 7.83 -2.91 -0.02 2.29 16 25 H 0.07 2.40 6.84 -2.91 -0.02 2.38 16 26 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.08 0.78 7.78 -2.39 -0.02 0.76 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 9.22 6.00 -92.71 -0.56 8.66 16 32 H 0.10 1.78 5.57 -2.39 -0.01 1.77 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 4.53 5.16 -2.39 -0.01 4.51 16 Total: -1.00 -80.84 326.09 4.64 -76.20 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.47 Total: 18.29 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.54 Total: 5.55 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.41 Total: -105.11 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: 0.01 Total: -41.67 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -80.84 4.64 -76.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854218367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.178 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds