Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.09000 * 109.47466 * 306.03599 * 3 2 1 5 5 C 1.50703 * 109.46835 * 186.03804 * 3 2 1 6 6 H 1.07993 * 120.00370 * 245.51656 * 5 3 2 7 7 C 1.37882 * 119.99849 * 65.51723 * 5 3 2 8 8 N 1.31512 * 120.00119 * 9.22527 * 7 5 3 9 9 Si 1.86799 * 119.99971 * 189.22763 * 7 5 3 10 10 H 1.48503 * 109.47252 * 94.98798 * 9 7 5 11 11 H 1.48504 * 109.47244 * 214.98974 * 9 7 5 12 12 H 1.48500 * 109.47065 * 334.98747 * 9 7 5 13 13 N 1.46501 * 109.47205 * 66.04136 * 3 2 1 14 14 C 1.34766 * 119.99907 * 274.99666 * 13 3 2 15 15 O 1.21290 * 120.00117 * 4.34951 * 14 13 3 16 16 C 1.50700 * 120.00066 * 184.34913 * 14 13 3 17 17 C 1.53002 * 110.43412 * 297.27086 * 16 14 13 18 18 C 1.52996 * 109.47229 * 301.97244 * 17 16 14 19 19 C 1.54630 * 110.48519 * 174.73194 * 16 14 13 20 20 C 1.54834 * 101.60648 * 266.07760 * 19 16 14 21 21 N 1.46766 * 105.49317 * 334.57129 * 20 19 16 22 22 C 1.34425 * 111.30208 * 17.03197 * 21 20 19 23 23 O 1.21276 * 124.94605 * 179.55701 * 22 21 20 24 24 H 1.09009 * 109.46989 * 299.99559 * 1 2 3 25 25 H 1.08998 * 109.47461 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47206 * 240.00038 * 2 1 3 28 28 H 1.09000 * 109.47324 * 119.99627 * 2 1 3 29 29 H 0.96995 * 119.99933 * 180.02562 * 8 7 5 30 30 H 0.97001 * 119.99673 * 95.00286 * 13 3 2 31 31 H 1.08998 * 109.46794 * 61.97298 * 17 16 14 32 32 H 1.09000 * 109.46888 * 181.97214 * 17 16 14 33 33 H 1.09003 * 109.46913 * 66.15087 * 18 17 16 34 34 H 1.08998 * 109.47573 * 186.14916 * 18 17 16 35 35 H 1.09005 * 109.47420 * 306.15620 * 18 17 16 36 36 H 1.09001 * 110.97356 * 24.23716 * 19 16 14 37 37 H 1.08999 * 110.97033 * 148.00044 * 19 16 14 38 38 H 1.08996 * 110.22518 * 215.57495 * 20 19 16 39 39 H 1.09003 * 110.32400 * 93.61947 * 20 19 16 40 40 H 0.96998 * 124.35030 * 197.01642 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5395 1.4452 -0.1495 6 1 4.1620 1.8036 0.6570 7 6 4.1168 0.9899 -1.3159 8 7 3.3650 0.7249 -2.3619 9 14 5.9669 0.7494 -1.4104 10 1 6.2979 -0.6670 -1.1109 11 1 6.4414 1.0907 -2.7756 12 1 6.6322 1.6333 -0.4198 13 7 1.6739 2.0899 1.2622 14 6 0.4588 2.6560 1.4016 15 8 -0.3600 2.5613 0.5118 16 6 0.1175 3.4068 2.6629 17 6 0.1530 2.4672 3.8699 18 6 -0.8283 1.3146 3.6481 19 6 -1.2720 4.0734 2.5367 20 6 -0.8936 5.4909 2.0417 21 7 0.4771 5.7182 2.5143 22 6 1.0707 4.5641 2.8646 23 8 2.2054 4.4649 3.2810 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7712 0.4043 -3.1823 30 1 2.3061 2.1111 1.9976 31 1 1.1603 2.0687 3.9906 32 1 -0.1299 3.0176 4.7672 33 1 -0.4845 0.6997 2.8163 34 1 -0.8844 0.7062 4.5507 35 1 -1.8153 1.7166 3.4189 36 1 -1.8888 3.5538 1.8034 37 1 -1.7726 4.1179 3.5039 38 1 -1.5681 6.2321 2.4703 39 1 -0.9292 5.5338 0.9531 40 1 0.9005 6.5894 2.5669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867420619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -87.818542 kcal Electronic energy + Delta-G solvation = -22158.626800 eV Core-core repulsion = 18972.689112 eV Total energy + Delta-G solvation = -3185.937688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02429 -38.44469 -36.32641 -34.93663 -34.26917 -32.24886 -30.99063 -29.64516 -27.70366 -26.73107 -23.29868 -23.09593 -21.95414 -21.31902 -19.65982 -18.89108 -17.46307 -17.04716 -16.05610 -15.53589 -15.30802 -14.75019 -14.61491 -14.30682 -13.98647 -13.56310 -13.37900 -13.00648 -12.84113 -12.64306 -12.10814 -11.99522 -11.72345 -11.47346 -11.40910 -11.30991 -11.05470 -10.96221 -10.77026 -10.66407 -10.32463 -10.14353 -9.71555 -9.61297 -9.11246 -9.06819 -8.92090 -8.44686 -7.82505 -6.11700 -4.16147 2.58278 3.21036 3.27990 3.35058 3.38871 3.47820 4.03703 4.33374 4.41386 4.48837 4.76360 5.05134 5.21536 5.23546 5.32275 5.40735 5.45757 5.62940 5.77580 5.92051 5.99912 6.08738 6.14175 6.30501 6.36439 6.49079 6.63520 6.78609 7.00184 7.03331 7.17737 7.33963 7.42635 7.63395 7.74581 7.86908 8.10023 8.29243 8.68227 8.81655 9.10483 9.49410 10.96489 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.006543 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.507217 B = 4278.369854 C = 4785.107430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.525 3.475 15 O -0.540 6.540 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.156 4.156 19 C -0.116 4.116 20 C 0.100 3.900 21 N -0.731 5.731 22 C 0.533 3.467 23 O -0.519 6.519 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.393 0.607 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 6.014 10.940 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.343 5.343 14 C 0.307 3.693 15 O -0.418 6.418 16 C -0.127 4.127 17 C -0.135 4.135 18 C -0.213 4.213 19 C -0.153 4.153 20 C -0.024 4.024 21 N -0.387 5.387 22 C 0.318 3.682 23 O -0.393 6.393 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.227 0.773 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.909 5.707 10.274 15.372 hybrid contribution 1.496 0.322 0.178 1.540 sum -8.414 6.028 10.451 14.709 Atomic orbital electron populations 1.21930 0.97920 0.98057 1.01855 1.21848 0.93106 0.99743 1.01169 1.18826 0.94695 0.89110 0.80545 0.92801 1.21234 0.90709 1.43970 1.01450 0.91970 1.24871 0.98404 0.95141 0.95030 1.69986 1.35458 1.44214 1.02162 0.86510 0.85112 0.78565 0.77443 1.20504 1.21172 1.19750 1.46497 1.14039 1.55096 1.18678 1.19365 0.83395 0.79929 0.86601 1.90656 1.48343 1.61226 1.41624 1.21773 0.97008 0.95802 0.98089 1.21370 1.01683 0.95871 0.94536 1.21869 0.99212 0.97937 1.02305 1.22724 0.95217 0.94116 1.03292 1.22174 0.82349 0.97610 1.00265 1.46126 1.16301 1.09353 1.66898 1.20407 0.86730 0.84943 0.76141 1.90756 1.17610 1.85409 1.45563 0.93284 0.93067 0.95968 0.90256 0.94705 0.92652 0.77327 0.90406 0.91145 0.91626 0.92303 0.92215 0.87160 0.89766 0.90295 0.90507 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.49 37.16 0.32 -2.71 16 2 C -0.12 -2.86 5.50 -26.73 -0.15 -3.01 16 3 C 0.27 6.86 2.09 -69.08 -0.14 6.71 16 4 H 0.05 1.58 7.59 -51.93 -0.39 1.19 16 5 C -0.54 -14.62 8.66 -34.44 -0.30 -14.92 16 6 H 0.06 1.69 7.73 -52.49 -0.41 1.28 16 7 C 0.07 1.90 5.15 -17.82 -0.09 1.81 16 8 N -0.88 -25.17 12.16 55.43 0.67 -24.49 16 9 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -15.02 4.89 -54.93 -0.27 -15.29 16 14 C 0.52 10.14 4.22 -10.99 -0.05 10.10 16 15 O -0.54 -11.57 12.27 5.55 0.07 -11.50 16 16 C -0.12 -1.79 0.47 -155.67 -0.07 -1.86 16 17 C -0.10 -1.26 4.78 -26.73 -0.13 -1.38 16 18 C -0.16 -1.91 9.44 37.16 0.35 -1.56 16 19 C -0.12 -1.33 5.03 -24.91 -0.13 -1.46 16 20 C 0.10 1.06 7.79 -2.93 -0.02 1.04 16 21 N -0.73 -9.19 6.24 -59.01 -0.37 -9.56 16 22 C 0.53 8.60 7.07 -10.86 -0.08 8.53 16 23 O -0.52 -10.05 17.71 5.56 0.10 -9.95 16 24 H 0.05 1.00 3.84 -51.92 -0.20 0.80 16 25 H 0.05 1.18 7.86 -51.93 -0.41 0.77 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 2.09 6.78 -51.93 -0.35 1.74 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 8.23 7.94 -40.82 -0.32 7.90 16 31 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.06 0.97 5.79 -51.93 -0.30 0.67 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.66 7.23 -51.93 -0.38 0.29 16 36 H 0.11 1.39 6.90 -51.93 -0.36 1.03 16 37 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.41 4.32 8.96 -40.82 -0.37 3.95 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -31.53 316.23 -6.51 -38.04 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.97 Total: 10.51 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.49 Total: 1.28 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.04 Total: -49.35 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.17 Total: -21.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.53 -6.51 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.783 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds