Wall clock time and date at job start Mon Mar 30 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.09000 * 109.47466 * 306.03599 * 3 2 1 5 5 C 1.50703 * 109.46835 * 186.03804 * 3 2 1 6 6 H 1.07993 * 120.00370 * 245.51656 * 5 3 2 7 7 C 1.37882 * 119.99849 * 65.51723 * 5 3 2 8 8 N 1.31512 * 120.00119 * 9.22527 * 7 5 3 9 9 Si 1.86799 * 119.99971 * 189.22763 * 7 5 3 10 10 H 1.48503 * 109.47252 * 94.98798 * 9 7 5 11 11 H 1.48504 * 109.47244 * 214.98974 * 9 7 5 12 12 H 1.48500 * 109.47065 * 334.98747 * 9 7 5 13 13 N 1.46501 * 109.47205 * 66.04136 * 3 2 1 14 14 C 1.34766 * 119.99907 * 274.99666 * 13 3 2 15 15 O 1.21290 * 120.00117 * 4.34951 * 14 13 3 16 16 C 1.50700 * 120.00066 * 184.34913 * 14 13 3 17 17 C 1.53002 * 110.43412 * 297.27086 * 16 14 13 18 18 C 1.52996 * 109.47229 * 301.97244 * 17 16 14 19 19 C 1.54630 * 110.48519 * 174.73194 * 16 14 13 20 20 C 1.54834 * 101.60648 * 266.07760 * 19 16 14 21 21 N 1.46766 * 105.49317 * 334.57129 * 20 19 16 22 22 C 1.34425 * 111.30208 * 17.03197 * 21 20 19 23 23 O 1.21276 * 124.94605 * 179.55701 * 22 21 20 24 24 H 1.09009 * 109.46989 * 299.99559 * 1 2 3 25 25 H 1.08998 * 109.47461 * 59.99847 * 1 2 3 26 26 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47206 * 240.00038 * 2 1 3 28 28 H 1.09000 * 109.47324 * 119.99627 * 2 1 3 29 29 H 0.96995 * 119.99933 * 180.02562 * 8 7 5 30 30 H 0.97001 * 119.99673 * 95.00286 * 13 3 2 31 31 H 1.08998 * 109.46794 * 61.97298 * 17 16 14 32 32 H 1.09000 * 109.46888 * 181.97214 * 17 16 14 33 33 H 1.09003 * 109.46913 * 66.15087 * 18 17 16 34 34 H 1.08998 * 109.47573 * 186.14916 * 18 17 16 35 35 H 1.09005 * 109.47420 * 306.15620 * 18 17 16 36 36 H 1.09001 * 110.97356 * 24.23716 * 19 16 14 37 37 H 1.08999 * 110.97033 * 148.00044 * 19 16 14 38 38 H 1.08996 * 110.22518 * 215.57495 * 20 19 16 39 39 H 1.09003 * 110.32400 * 93.61947 * 20 19 16 40 40 H 0.96998 * 124.35030 * 197.01642 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5395 1.4452 -0.1495 6 1 4.1620 1.8036 0.6570 7 6 4.1168 0.9899 -1.3159 8 7 3.3650 0.7249 -2.3619 9 14 5.9669 0.7494 -1.4104 10 1 6.2979 -0.6670 -1.1109 11 1 6.4414 1.0907 -2.7756 12 1 6.6322 1.6333 -0.4198 13 7 1.6739 2.0899 1.2622 14 6 0.4588 2.6560 1.4016 15 8 -0.3600 2.5613 0.5118 16 6 0.1175 3.4068 2.6629 17 6 0.1530 2.4672 3.8699 18 6 -0.8283 1.3146 3.6481 19 6 -1.2720 4.0734 2.5367 20 6 -0.8936 5.4909 2.0417 21 7 0.4771 5.7182 2.5143 22 6 1.0707 4.5641 2.8646 23 8 2.2054 4.4649 3.2810 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7712 0.4043 -3.1823 30 1 2.3061 2.1111 1.9976 31 1 1.1603 2.0687 3.9906 32 1 -0.1299 3.0176 4.7672 33 1 -0.4845 0.6997 2.8163 34 1 -0.8844 0.7062 4.5507 35 1 -1.8153 1.7166 3.4189 36 1 -1.8888 3.5538 1.8034 37 1 -1.7726 4.1179 3.5039 38 1 -1.5681 6.2321 2.4703 39 1 -0.9292 5.5338 0.9531 40 1 0.9005 6.5894 2.5669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867420619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:19 Heat of formation + Delta-G solvation = -111.754675 kcal Electronic energy + Delta-G solvation = -22159.664749 eV Core-core repulsion = 18972.689112 eV Total energy + Delta-G solvation = -3186.975637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28972 -39.98045 -37.65433 -36.70469 -35.41361 -34.22734 -32.80429 -30.65483 -29.21865 -28.33107 -25.18542 -24.11079 -23.44679 -22.44256 -21.49971 -20.47160 -18.84564 -18.32508 -17.78393 -17.26205 -16.74731 -16.38245 -15.85250 -15.82275 -15.27602 -14.79889 -14.70041 -14.59281 -14.37022 -13.89575 -13.69406 -13.41378 -13.30310 -13.06357 -12.96323 -12.68942 -12.64812 -12.39625 -12.21093 -12.18821 -12.00076 -11.70424 -11.50943 -11.11930 -10.97147 -10.59454 -10.51485 -10.11242 -9.64846 -8.23470 -6.35859 1.27515 1.39647 1.40503 1.51569 1.79415 2.32787 2.37500 2.62207 3.07442 3.24096 3.43544 3.70302 4.00778 4.09987 4.32354 4.41029 4.45762 4.49663 4.57773 4.72592 4.75028 4.82459 5.02598 5.03919 5.06595 5.15726 5.17088 5.25730 5.36707 5.48103 5.53898 5.58283 5.74539 5.76294 5.87343 5.94553 6.05845 6.71860 6.92043 7.15100 7.28821 7.47880 8.84913 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.006543 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.507217 B = 4278.369854 C = 4785.107430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 C 0.280 3.720 4 H 0.005 0.995 5 C -0.554 4.554 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.702 5.702 14 C 0.523 3.477 15 O -0.563 6.563 16 C -0.116 4.116 17 C -0.095 4.095 18 C -0.152 4.152 19 C -0.111 4.111 20 C 0.098 3.902 21 N -0.718 5.718 22 C 0.522 3.478 23 O -0.560 6.560 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.266 0.734 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 6.666 12.829 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.787 3.213 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.350 5.350 14 C 0.308 3.692 15 O -0.443 6.443 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.209 4.209 19 C -0.148 4.148 20 C -0.026 4.026 21 N -0.373 5.373 22 C 0.307 3.693 23 O -0.438 6.438 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.230 0.770 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.946 6.395 12.173 17.575 hybrid contribution 1.742 0.183 -0.435 1.805 sum -9.204 6.578 11.738 16.302 Atomic orbital electron populations 1.21778 0.95992 0.99409 1.01232 1.21682 0.94759 0.98521 1.00100 1.18391 0.93589 0.89492 0.80838 0.97681 1.21530 0.91832 1.44239 1.01625 0.92272 1.25692 1.02959 0.94660 0.94575 1.70107 1.37392 1.44764 1.02661 0.85477 0.79511 0.78832 0.77430 1.19436 1.20758 1.19450 1.46342 1.15283 1.55917 1.17426 1.20091 0.82041 0.79147 0.87914 1.90641 1.48763 1.61858 1.43051 1.21792 0.98876 0.95515 0.96090 1.21429 1.01153 0.96034 0.94688 1.21846 0.99451 0.97479 1.02112 1.22842 0.92966 0.93802 1.05204 1.22401 0.81825 0.98520 0.99839 1.46164 1.17026 1.08993 1.65126 1.20669 0.86377 0.86142 0.76104 1.90730 1.19242 1.86135 1.47706 0.92204 0.95331 0.93539 0.93059 0.93771 0.92474 0.76986 0.92164 0.88108 0.94751 0.90103 0.90717 0.88140 0.85821 0.85553 0.91882 0.73980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.49 71.98 0.61 -4.93 16 2 C -0.11 -5.50 5.50 30.59 0.17 -5.33 16 3 C 0.28 14.84 2.09 44.25 0.09 14.93 16 4 H 0.01 0.33 7.59 -2.39 -0.02 0.31 16 5 C -0.55 -31.19 8.66 25.60 0.22 -30.97 16 6 H 0.06 3.29 7.73 -2.91 -0.02 3.26 16 7 C 0.02 1.23 5.15 84.66 0.44 1.67 16 8 N -0.91 -53.62 12.16 21.45 0.26 -53.35 16 9 Si 0.96 44.07 29.55 68.60 2.03 46.10 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.70 -31.22 4.89 -446.09 -2.18 -33.40 16 14 C 0.52 20.41 4.22 87.66 0.37 20.78 16 15 O -0.56 -24.57 12.27 -3.06 -0.04 -24.61 16 16 C -0.12 -3.30 0.47 -52.93 -0.02 -3.32 16 17 C -0.09 -2.28 4.78 30.59 0.15 -2.13 16 18 C -0.15 -3.36 9.44 71.98 0.68 -2.68 16 19 C -0.11 -2.21 5.03 31.78 0.16 -2.05 16 20 C 0.10 1.76 7.79 86.95 0.68 2.43 16 21 N -0.72 -16.56 6.24 -459.19 -2.87 -19.43 16 22 C 0.52 16.29 7.07 87.90 0.62 16.91 16 23 O -0.56 -21.66 17.71 -3.02 -0.05 -21.72 16 24 H 0.06 2.46 3.84 -2.38 -0.01 2.45 16 25 H 0.03 1.34 7.86 -2.39 -0.02 1.32 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 2.80 6.78 -2.39 -0.02 2.78 16 28 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.40 17.11 7.94 -92.71 -0.74 16.37 16 31 H 0.06 1.66 7.77 -2.39 -0.02 1.64 16 32 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.03 0.97 5.79 -2.39 -0.01 0.96 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.42 7.23 -2.38 -0.02 1.40 16 36 H 0.10 2.30 6.90 -2.39 -0.02 2.28 16 37 H 0.12 1.54 7.89 -2.39 -0.02 1.52 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 8.00 8.96 -92.71 -0.83 7.16 16 Total: -1.00 -71.47 316.23 0.81 -70.66 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.50 Total: 30.42 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.16 Total: 5.32 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.79 Total: -106.18 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.09 Total: -46.32 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.47 0.81 -70.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.095 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds