Wall clock time and date at job start Mon Mar 30 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47471 * 2 1 4 4 H 1.08997 * 109.46984 * 305.00358 * 3 2 1 5 5 C 1.50691 * 109.47511 * 185.00183 * 3 2 1 6 6 H 1.08003 * 120.00310 * 240.00434 * 5 3 2 7 7 C 1.37871 * 120.00287 * 59.99955 * 5 3 2 8 8 N 1.31512 * 119.99759 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00301 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47455 * 90.00264 * 9 7 5 11 11 H 1.48507 * 109.47275 * 210.00183 * 9 7 5 12 12 H 1.48503 * 109.47336 * 329.99946 * 9 7 5 13 13 N 1.46506 * 109.46874 * 64.99977 * 3 2 1 14 14 C 1.34777 * 120.00032 * 275.00258 * 13 3 2 15 15 O 1.21278 * 120.00101 * 355.09496 * 14 13 3 16 16 C 1.50697 * 119.99798 * 175.08749 * 14 13 3 17 17 C 1.52995 * 110.43923 * 306.42270 * 16 14 13 18 18 C 1.53000 * 109.47524 * 299.75896 * 17 16 14 19 19 C 1.54628 * 110.59782 * 69.04112 * 16 14 13 20 20 C 1.54486 * 101.76575 * 143.52833 * 19 16 14 21 21 N 1.46762 * 105.47250 * 334.58444 * 20 19 16 22 22 C 1.34420 * 111.30218 * 17.01626 * 21 20 19 23 23 O 1.21280 * 124.94300 * 179.62382 * 22 21 20 24 24 H 1.09006 * 109.47456 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47191 * 299.99533 * 1 2 3 26 26 H 1.08998 * 109.47326 * 60.00025 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00090 * 2 1 3 28 28 H 1.09000 * 109.47189 * 120.00507 * 2 1 3 29 29 H 0.97006 * 120.00008 * 179.97438 * 8 7 5 30 30 H 0.97003 * 119.99825 * 95.00076 * 13 3 2 31 31 H 1.09004 * 109.47594 * 179.75326 * 17 16 14 32 32 H 1.09008 * 109.47226 * 59.75647 * 17 16 14 33 33 H 1.08997 * 109.47751 * 178.11412 * 18 17 16 34 34 H 1.09008 * 109.46733 * 298.11636 * 18 17 16 35 35 H 1.09000 * 109.46876 * 58.10927 * 18 17 16 36 36 H 1.09001 * 110.97448 * 261.64873 * 19 16 14 37 37 H 1.09000 * 110.96918 * 25.41066 * 19 16 14 38 38 H 1.08996 * 110.24830 * 215.58469 * 20 19 16 39 39 H 1.09003 * 110.24049 * 93.58560 * 20 19 16 40 40 H 0.97003 * 124.35179 * 197.02879 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0719 -0.6889 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3053 2.7110 0.4077 16 6 -0.0060 3.2400 2.6880 17 6 0.1339 2.1972 3.7987 18 6 -0.7406 0.9847 3.4730 19 6 0.8118 4.5072 3.0294 20 6 -0.2526 5.3944 3.7125 21 7 -1.5418 4.9420 3.1768 22 6 -1.4338 3.7323 2.6007 23 8 -2.3479 3.1243 2.0853 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0603 -2.9503 30 1 2.2719 2.1230 1.9979 31 1 -0.1848 2.6309 4.7466 32 1 1.1753 1.8842 3.8743 33 1 -0.6153 0.2278 4.2473 34 1 -1.7857 1.2914 3.4305 35 1 -0.4438 0.5711 2.5092 36 1 1.6245 4.2735 3.7171 37 1 1.1925 4.9813 2.1247 38 1 -0.0870 6.4423 3.4625 39 1 -0.2230 5.2545 4.7931 40 1 -2.3660 5.4507 3.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867420622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:30 Heat of formation + Delta-G solvation = -82.559527 kcal Electronic energy + Delta-G solvation = -22139.879735 eV Core-core repulsion = 18954.170094 eV Total energy + Delta-G solvation = -3185.709640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00668 -38.35415 -36.28603 -34.98314 -34.06456 -32.19459 -30.95543 -29.95989 -27.43539 -26.80198 -23.27535 -22.88582 -22.16103 -21.46585 -19.57953 -18.88458 -17.47023 -16.78025 -16.06423 -15.59182 -15.26732 -14.87896 -14.55864 -14.22092 -14.00395 -13.45916 -13.06780 -12.99364 -12.83995 -12.62848 -12.31682 -12.16069 -11.85429 -11.47228 -11.37554 -11.21710 -11.04435 -10.91800 -10.79630 -10.68120 -10.29089 -10.07619 -9.51075 -9.50277 -9.11436 -9.01514 -8.83530 -8.47941 -7.77800 -6.10661 -4.20284 2.76636 3.24264 3.31048 3.32403 3.33653 3.38200 4.06919 4.26583 4.35511 4.49586 4.75711 4.90181 5.14001 5.20743 5.29149 5.32636 5.46419 5.58794 5.69431 5.82119 5.97532 6.03921 6.16311 6.39237 6.44543 6.63065 6.76164 6.85194 7.03939 7.12522 7.27125 7.42988 7.49984 7.64362 7.76286 7.93047 8.21075 8.41768 8.68979 8.80105 9.16705 9.47197 10.94586 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026476 B = 0.005889 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.291708 B = 4753.614006 C = 5186.279331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.524 3.476 15 O -0.528 6.528 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.169 4.169 19 C -0.125 4.125 20 C 0.106 3.894 21 N -0.740 5.740 22 C 0.544 3.456 23 O -0.498 6.498 24 H 0.023 0.977 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 7.522 14.595 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.306 3.694 15 O -0.404 6.404 16 C -0.128 4.128 17 C -0.133 4.133 18 C -0.226 4.226 19 C -0.163 4.163 20 C -0.019 4.019 21 N -0.397 5.397 22 C 0.328 3.672 23 O -0.370 6.370 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.427 7.017 13.381 15.744 hybrid contribution 1.038 0.289 0.326 1.126 sum -3.388 7.305 13.707 15.897 Atomic orbital electron populations 1.21988 0.98372 0.98344 1.01665 1.21929 0.92570 0.99792 1.02242 1.18782 0.94139 0.89110 0.81015 0.93276 1.21213 0.90695 1.39011 1.06233 0.92112 1.24885 0.98500 0.94882 0.95415 1.69901 1.35082 1.37572 1.09321 0.86475 0.85004 0.78386 0.77366 1.20576 1.21127 1.19907 1.46395 1.14198 1.56149 1.18576 1.19435 0.82958 0.79093 0.87907 1.90747 1.53361 1.57417 1.38902 1.21801 0.95438 0.97553 0.97999 1.21394 1.01829 0.94615 0.95492 1.22045 1.00504 0.97121 1.02942 1.22739 0.97490 0.93648 1.02430 1.22011 0.82754 0.99076 0.98084 1.46118 1.12059 1.20787 1.60757 1.20050 0.89695 0.80876 0.76562 1.90746 1.44120 1.59764 1.42366 0.95749 0.93318 0.93221 0.88342 0.95020 0.92576 0.78119 0.91264 0.90153 0.92516 0.91939 0.90744 0.88348 0.89240 0.90230 0.91047 0.75283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.58 37.15 0.32 -3.08 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.75 2.25 -69.08 -0.16 6.59 16 4 H 0.05 1.44 7.51 -51.93 -0.39 1.05 16 5 C -0.53 -13.79 8.73 -34.45 -0.30 -14.09 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -14.16 4.86 -54.94 -0.27 -14.43 16 14 C 0.52 10.45 3.93 -10.99 -0.04 10.41 16 15 O -0.53 -13.08 13.04 -12.39 -0.16 -13.24 16 16 C -0.12 -1.79 0.50 -155.67 -0.08 -1.87 16 17 C -0.10 -1.19 4.80 -26.73 -0.13 -1.32 16 18 C -0.17 -2.52 9.38 37.16 0.35 -2.17 16 19 C -0.13 -1.33 6.22 -25.10 -0.16 -1.49 16 20 C 0.11 0.88 7.78 -3.12 -0.02 0.85 16 21 N -0.74 -8.56 6.24 -59.20 -0.37 -8.93 16 22 C 0.54 8.96 6.30 -10.86 -0.07 8.89 16 23 O -0.50 -10.41 15.77 -12.39 -0.20 -10.61 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 1.10 3.04 -51.93 -0.16 0.94 16 26 H 0.05 1.25 7.92 -51.93 -0.41 0.83 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.63 7.79 -40.82 -0.32 6.31 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.89 7.41 -51.92 -0.38 0.51 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.01 6.57 -51.92 -0.34 0.67 16 35 H 0.07 1.33 4.57 -51.93 -0.24 1.09 16 36 H 0.10 0.77 7.90 -51.93 -0.41 0.36 16 37 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.41 3.93 8.96 -40.82 -0.37 3.56 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -33.48 311.71 -7.03 -40.52 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.81 Total: 9.54 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.53 Total: 1.16 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.01 Total: -47.40 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.36 Total: -23.85 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.48 -7.03 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.044 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds