Wall clock time and date at job start Mon Mar 30 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47471 * 2 1 4 4 H 1.08997 * 109.46984 * 305.00358 * 3 2 1 5 5 C 1.50691 * 109.47511 * 185.00183 * 3 2 1 6 6 H 1.08003 * 120.00310 * 240.00434 * 5 3 2 7 7 C 1.37871 * 120.00287 * 59.99955 * 5 3 2 8 8 N 1.31512 * 119.99759 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00301 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47455 * 90.00264 * 9 7 5 11 11 H 1.48507 * 109.47275 * 210.00183 * 9 7 5 12 12 H 1.48503 * 109.47336 * 329.99946 * 9 7 5 13 13 N 1.46506 * 109.46874 * 64.99977 * 3 2 1 14 14 C 1.34777 * 120.00032 * 275.00258 * 13 3 2 15 15 O 1.21278 * 120.00101 * 355.09496 * 14 13 3 16 16 C 1.50697 * 119.99798 * 175.08749 * 14 13 3 17 17 C 1.52995 * 110.43923 * 306.42270 * 16 14 13 18 18 C 1.53000 * 109.47524 * 299.75896 * 17 16 14 19 19 C 1.54628 * 110.59782 * 69.04112 * 16 14 13 20 20 C 1.54486 * 101.76575 * 143.52833 * 19 16 14 21 21 N 1.46762 * 105.47250 * 334.58444 * 20 19 16 22 22 C 1.34420 * 111.30218 * 17.01626 * 21 20 19 23 23 O 1.21280 * 124.94300 * 179.62382 * 22 21 20 24 24 H 1.09006 * 109.47456 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47191 * 299.99533 * 1 2 3 26 26 H 1.08998 * 109.47326 * 60.00025 * 1 2 3 27 27 H 1.09002 * 109.46971 * 240.00090 * 2 1 3 28 28 H 1.09000 * 109.47189 * 120.00507 * 2 1 3 29 29 H 0.97006 * 120.00008 * 179.97438 * 8 7 5 30 30 H 0.97003 * 119.99825 * 95.00076 * 13 3 2 31 31 H 1.09004 * 109.47594 * 179.75326 * 17 16 14 32 32 H 1.09008 * 109.47226 * 59.75647 * 17 16 14 33 33 H 1.08997 * 109.47751 * 178.11412 * 18 17 16 34 34 H 1.09008 * 109.46733 * 298.11636 * 18 17 16 35 35 H 1.09000 * 109.46876 * 58.10927 * 18 17 16 36 36 H 1.09001 * 110.97448 * 261.64873 * 19 16 14 37 37 H 1.09000 * 110.96918 * 25.41066 * 19 16 14 38 38 H 1.08996 * 110.24830 * 215.58469 * 20 19 16 39 39 H 1.09003 * 110.24049 * 93.58560 * 20 19 16 40 40 H 0.97003 * 124.35179 * 197.02879 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0719 -0.6889 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3053 2.7110 0.4077 16 6 -0.0060 3.2400 2.6880 17 6 0.1339 2.1972 3.7987 18 6 -0.7406 0.9847 3.4730 19 6 0.8118 4.5072 3.0294 20 6 -0.2526 5.3944 3.7125 21 7 -1.5418 4.9420 3.1768 22 6 -1.4338 3.7323 2.6007 23 8 -2.3479 3.1243 2.0853 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0603 -2.9503 30 1 2.2719 2.1230 1.9979 31 1 -0.1848 2.6309 4.7466 32 1 1.1753 1.8842 3.8743 33 1 -0.6153 0.2278 4.2473 34 1 -1.7857 1.2914 3.4305 35 1 -0.4438 0.5711 2.5092 36 1 1.6245 4.2735 3.7171 37 1 1.1925 4.9813 2.1247 38 1 -0.0870 6.4423 3.4625 39 1 -0.2230 5.2545 4.7931 40 1 -2.3660 5.4507 3.2312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867420622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:30 Heat of formation + Delta-G solvation = -108.350711 kcal Electronic energy + Delta-G solvation = -22140.998125 eV Core-core repulsion = 18954.170094 eV Total energy + Delta-G solvation = -3186.828030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23277 -39.90917 -37.49421 -36.87726 -35.23694 -34.07917 -32.75743 -31.02781 -29.02378 -28.22777 -25.18573 -23.95213 -23.37560 -22.74308 -21.40895 -20.44353 -18.75338 -18.26292 -17.38157 -17.23680 -16.80682 -16.32536 -16.18689 -15.44375 -15.20171 -14.86635 -14.61622 -14.36652 -14.15478 -14.07777 -13.80111 -13.41881 -13.17865 -13.11454 -12.89181 -12.82671 -12.65295 -12.59697 -12.22083 -12.12614 -11.95226 -11.74427 -11.40186 -11.03431 -10.71935 -10.57731 -10.45657 -9.99274 -9.59765 -8.12940 -6.30751 1.47051 1.47947 1.53457 1.58586 1.84720 2.30755 2.44363 2.75975 3.16655 3.22156 3.49506 3.76462 4.00159 4.07940 4.29410 4.43789 4.45961 4.47670 4.57942 4.74530 4.77999 4.83866 4.97733 4.99348 5.00872 5.11867 5.15719 5.24179 5.36038 5.54178 5.58688 5.66186 5.82214 5.89931 5.96160 6.05545 6.18786 6.78218 7.01022 7.31578 7.37128 7.63712 8.92658 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026476 B = 0.005889 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.291708 B = 4753.614006 C = 5186.279331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.280 3.720 4 H -0.008 1.008 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.260 1.260 13 N -0.695 5.695 14 C 0.520 3.480 15 O -0.585 6.585 16 C -0.117 4.117 17 C -0.092 4.092 18 C -0.169 4.169 19 C -0.122 4.122 20 C 0.105 3.895 21 N -0.725 5.725 22 C 0.529 3.471 23 O -0.559 6.559 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.016 0.984 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.405 0.595 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.139 0.861 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 8.906 18.294 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.176 3.824 4 H 0.010 0.990 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.797 3.203 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.305 3.695 15 O -0.465 6.465 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.226 4.226 19 C -0.160 4.160 20 C -0.018 4.018 21 N -0.381 5.381 22 C 0.313 3.687 23 O -0.436 6.436 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.241 0.759 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.157 0.843 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.347 8.463 17.164 19.280 hybrid contribution 0.339 -0.093 -0.832 0.903 sum -2.007 8.370 16.332 18.461 Atomic orbital electron populations 1.21864 0.97773 0.99105 1.00476 1.21758 0.92966 0.99482 1.01391 1.18323 0.93796 0.88823 0.81411 0.99026 1.21575 0.91112 1.38692 1.06687 0.90391 1.25817 1.03387 0.94463 0.95051 1.70079 1.37156 1.38571 1.09944 0.85350 0.79015 0.79016 0.76967 1.19670 1.21746 1.18441 1.46069 1.15015 1.55863 1.17538 1.20353 0.81841 0.77827 0.89439 1.90727 1.54749 1.59378 1.41659 1.21784 0.95337 0.99953 0.95291 1.21519 1.02624 0.92840 0.95944 1.22014 0.99780 0.99027 1.01809 1.22907 0.98819 0.91343 1.02947 1.22383 0.79714 0.99817 0.99865 1.46149 1.13999 1.19007 1.58980 1.20467 0.89774 0.82005 0.76418 1.90710 1.45901 1.61777 1.45242 0.93839 0.92570 0.96494 0.91187 0.93561 0.92759 0.75947 0.87274 0.87978 0.89921 0.94044 0.94398 0.84263 0.91066 0.87575 0.87002 0.74195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.60 8.58 71.98 0.62 -5.98 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.41 2.25 44.24 0.10 14.51 16 4 H -0.01 -0.51 7.51 -2.39 -0.02 -0.53 16 5 C -0.54 -28.08 8.73 25.60 0.22 -27.85 16 6 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -53.16 11.29 21.44 0.24 -52.92 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 13 N -0.70 -27.93 4.86 -446.11 -2.17 -30.09 16 14 C 0.52 21.06 3.93 87.66 0.34 21.41 16 15 O -0.59 -30.75 13.04 14.13 0.18 -30.57 16 16 C -0.12 -3.25 0.50 -52.94 -0.03 -3.28 16 17 C -0.09 -1.97 4.80 30.59 0.15 -1.82 16 18 C -0.17 -4.84 9.38 71.98 0.67 -4.17 16 19 C -0.12 -2.12 6.22 31.65 0.20 -1.92 16 20 C 0.11 1.22 7.78 86.83 0.68 1.90 16 21 N -0.73 -14.93 6.24 -459.80 -2.87 -17.80 16 22 C 0.53 17.09 6.30 87.90 0.55 17.64 16 23 O -0.56 -24.34 15.77 14.13 0.22 -24.12 16 24 H 0.04 1.88 8.14 -2.38 -0.02 1.87 16 25 H 0.06 2.67 3.04 -2.39 -0.01 2.66 16 26 H 0.02 0.88 7.92 -2.39 -0.02 0.86 16 27 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.40 13.07 7.79 -92.71 -0.72 12.34 16 31 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.10 1.78 7.41 -2.38 -0.02 1.76 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.35 6.57 -2.38 -0.02 1.33 16 35 H 0.04 1.35 4.57 -2.39 -0.01 1.34 16 36 H 0.14 1.30 7.90 -2.39 -0.02 1.28 16 37 H 0.07 1.53 7.91 -2.39 -0.02 1.51 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.42 7.12 8.96 -92.71 -0.83 6.29 16 Total: -1.00 -80.72 311.71 1.28 -79.44 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.48 Total: 26.80 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 4.12 Total: 5.81 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -4.79 Total: -100.81 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: 0.41 Total: -54.68 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -80.72 1.28 -79.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867420622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.909 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds