Wall clock time and date at job start Mon Mar 30 2020 01:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34424 * 124.34682 * 59.70181 * 4 2 1 6 6 O 1.21283 * 124.93995 * 359.57295 * 5 4 2 7 7 C 1.51282 * 110.11177 * 179.43991 * 5 4 2 8 8 C 1.54628 * 104.25605 * 344.14192 * 7 5 4 9 9 C 1.46760 * 124.35240 * 239.99793 * 4 2 1 10 10 H 1.09008 * 110.24074 * 78.01397 * 9 4 2 11 11 C 1.50702 * 110.24751 * 316.01965 * 9 4 2 12 12 O 1.21279 * 119.99819 * 0.02562 * 11 9 4 13 13 N 1.34776 * 119.99956 * 179.97438 * 11 9 4 14 14 C 1.46506 * 120.00044 * 0.02562 * 13 11 9 15 15 C 1.46494 * 119.99772 * 179.97438 * 13 11 9 16 16 C 1.50697 * 109.47101 * 90.00511 * 15 13 11 17 17 H 1.08001 * 120.00066 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00478 * 179.97438 * 16 15 13 19 19 N 1.31524 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00630 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46932 * 90.00054 * 20 18 16 22 22 H 1.48496 * 109.47297 * 209.99852 * 20 18 16 23 23 H 1.48495 * 109.46820 * 330.00220 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09005 * 110.63999 * 225.35670 * 7 5 4 32 32 H 1.09001 * 110.38933 * 102.80594 * 7 5 4 33 33 H 1.09002 * 110.97218 * 266.46364 * 8 7 5 34 34 H 1.09005 * 111.00017 * 142.72005 * 8 7 5 35 35 H 1.09001 * 109.46939 * 89.99478 * 14 13 11 36 36 H 1.08997 * 109.47008 * 209.99698 * 14 13 11 37 37 H 1.09001 * 109.47086 * 329.99735 * 14 13 11 38 38 H 1.08999 * 109.46871 * 209.99962 * 15 13 11 39 39 H 1.08994 * 109.47569 * 330.00100 * 15 13 11 40 40 H 0.96996 * 120.00117 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7434 -0.3117 -2.4562 6 8 1.0547 0.6390 -2.7609 7 6 2.4204 -1.2418 -3.4386 8 6 3.4724 -1.9923 -2.5894 9 6 2.8657 -1.8888 -1.1726 10 1 2.2646 -2.7715 -0.9542 11 6 3.9590 -1.7343 -0.1470 12 8 4.0334 -0.7188 0.5117 13 7 4.8535 -2.7252 0.0389 14 6 4.7632 -3.9522 -0.7565 15 6 5.9166 -2.5748 1.0354 16 6 5.4374 -3.0998 2.3642 17 1 4.4405 -3.5047 2.4572 18 6 6.2717 -3.0635 3.4614 19 7 7.4859 -2.5709 3.3481 20 14 5.6775 -3.7136 5.1087 21 1 6.0055 -5.1578 5.2183 22 1 6.3472 -2.9694 6.2053 23 1 4.2075 -3.5306 5.2119 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 2.9057 -0.6745 -4.2329 32 1 1.6983 -1.9424 -3.8578 33 1 4.4402 -1.4930 -2.6367 34 1 3.5569 -3.0330 -2.9026 35 1 5.3515 -3.8390 -1.6672 36 1 5.1492 -4.7904 -0.1765 37 1 3.7218 -4.1401 -1.0178 38 1 6.7945 -3.1373 0.7178 39 1 6.1763 -1.5208 1.1335 40 1 8.0730 -2.5456 4.1198 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874172866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:34 Heat of formation + Delta-G solvation = -88.798278 kcal Electronic energy + Delta-G solvation = -21780.804339 eV Core-core repulsion = 18594.824166 eV Total energy + Delta-G solvation = -3185.980173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04927 -40.07678 -37.32033 -36.68887 -35.86461 -34.63883 -31.02526 -30.53528 -28.60192 -28.13725 -27.25708 -24.97420 -23.42604 -23.18374 -20.61699 -19.55042 -18.73226 -18.28354 -17.73569 -17.05654 -16.68517 -16.36137 -16.05365 -15.67789 -15.08057 -14.82022 -14.54167 -14.52912 -14.30048 -13.93255 -13.72503 -13.57581 -13.42632 -13.05115 -13.03337 -12.86375 -12.78865 -12.65353 -12.49027 -12.22489 -12.19724 -12.06402 -11.94040 -11.68667 -10.82136 -10.63447 -10.50968 -9.66583 -9.37927 -8.21877 -6.36294 1.36768 1.39555 1.49126 1.54794 1.77804 1.91665 2.34079 2.47301 3.08241 3.30810 3.46118 3.72161 3.95815 4.03737 4.10396 4.15658 4.32743 4.49503 4.55622 4.66649 4.70686 4.79584 4.80699 4.86117 4.91302 4.97781 5.01209 5.09420 5.10511 5.15731 5.25653 5.30640 5.57242 5.60212 5.85044 6.06973 6.20079 6.71116 6.79186 7.16424 7.29341 7.47479 8.84817 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.005660 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.306311 B = 4945.703638 C = 5579.224959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 C -0.147 4.147 4 N -0.598 5.598 5 C 0.506 3.494 6 O -0.572 6.572 7 C -0.140 4.140 8 C -0.112 4.112 9 C 0.115 3.885 10 H 0.133 0.867 11 C 0.487 3.513 12 O -0.579 6.579 13 N -0.602 5.602 14 C 0.071 3.929 15 C 0.262 3.738 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.025 0.975 39 H -0.005 1.005 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 -4.438 -13.310 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 C -0.205 4.205 4 N -0.330 5.330 5 C 0.296 3.704 6 O -0.452 6.452 7 C -0.180 4.180 8 C -0.149 4.149 9 C 0.008 3.992 10 H 0.150 0.850 11 C 0.274 3.726 12 O -0.459 6.459 13 N -0.333 5.333 14 C -0.071 4.071 15 C 0.140 3.860 16 C -0.577 4.577 17 H 0.073 0.927 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.789 3.211 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.043 0.957 39 H 0.013 0.987 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.748 -3.372 -12.955 17.168 hybrid contribution 0.395 0.157 1.543 1.600 sum -10.353 -3.215 -11.412 15.740 Atomic orbital electron populations 1.22106 0.93555 1.02623 1.02912 1.20876 0.94134 0.92965 0.86881 1.21944 1.00610 0.96134 1.01856 1.48344 1.49436 1.28622 1.06630 1.21667 0.79881 0.84671 0.84200 1.90648 1.41718 1.30924 1.81924 1.22427 0.99367 0.98876 0.97309 1.22796 0.98125 1.05368 0.88653 1.21872 0.90712 0.89755 0.96851 0.85005 1.21263 0.83660 0.83232 0.84399 1.90667 1.74361 1.30885 1.49958 1.48093 1.29420 1.17547 1.38257 1.22142 1.04011 0.85482 0.95478 1.18722 0.85634 0.95380 0.86266 1.21701 0.99923 1.40671 0.95444 0.92722 1.25825 0.94951 0.95483 1.02851 1.70050 1.08253 1.46555 1.32056 0.85462 0.78241 0.78830 0.78565 1.18778 1.21026 1.19765 0.91666 0.92402 0.90441 0.90716 0.92807 0.91104 0.94265 0.86695 0.84197 0.90790 0.83584 0.90184 0.91651 0.88264 0.95683 0.98651 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.19 71.98 0.66 -3.45 16 2 C 0.15 5.01 2.38 44.99 0.11 5.12 16 3 C -0.15 -5.12 9.03 71.98 0.65 -4.47 16 4 N -0.60 -17.55 2.58 -774.51 -2.00 -19.55 16 5 C 0.51 14.08 7.41 87.90 0.65 14.73 16 6 O -0.57 -19.90 15.12 -3.04 -0.05 -19.95 16 7 C -0.14 -2.25 6.86 30.59 0.21 -2.04 16 8 C -0.11 -1.79 5.48 31.65 0.17 -1.62 16 9 C 0.12 2.88 2.79 44.70 0.12 3.00 16 10 H 0.13 2.50 7.32 -2.38 -0.02 2.48 16 11 C 0.49 18.33 6.73 87.66 0.59 18.92 16 12 O -0.58 -27.93 12.52 -3.03 -0.04 -27.97 16 13 N -0.60 -22.79 2.86 -851.15 -2.43 -25.23 16 14 C 0.07 1.68 9.02 127.77 1.15 2.83 16 15 C 0.26 13.38 5.16 85.63 0.44 13.82 16 16 C -0.54 -29.82 9.39 25.60 0.24 -29.58 16 17 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 20 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.68 6.75 -2.39 -0.02 1.66 16 26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.07 2.80 6.57 -2.39 -0.02 2.78 16 28 H 0.05 1.89 6.82 -2.39 -0.02 1.87 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.57 7.04 -2.39 -0.02 1.56 16 31 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.45 7.91 -2.39 -0.02 1.43 16 34 H 0.15 1.03 7.16 -2.38 -0.02 1.01 16 35 H 0.08 1.43 7.91 -2.39 -0.02 1.41 16 36 H 0.06 1.72 8.07 -2.39 -0.02 1.70 16 37 H 0.10 1.53 5.97 -2.39 -0.01 1.52 16 38 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 39 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -78.06 319.96 4.29 -73.78 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.02 Total: 9.78 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 5.47 Total: 18.18 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.14 Total: -99.76 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -0.08 Total: -47.92 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -78.06 4.29 -73.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874172866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.019 kcal (2) G-P(sol) polarization free energy of solvation -78.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds