Wall clock time and date at job start Mon Mar 30 2020 01:43:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3
5 5 C 1.34424 * 124.34682 * 59.70181 * 4 2 1
6 6 O 1.21283 * 124.93995 * 359.57295 * 5 4 2
7 7 C 1.51282 * 110.11177 * 179.43991 * 5 4 2
8 8 C 1.54628 * 104.25605 * 344.14192 * 7 5 4
9 9 C 1.46760 * 124.35240 * 239.99793 * 4 2 1
10 10 H 1.09008 * 110.24074 * 78.01397 * 9 4 2
11 11 C 1.50702 * 110.24751 * 316.01965 * 9 4 2
12 12 O 1.21279 * 119.99819 * 0.02562 * 11 9 4
13 13 N 1.34776 * 119.99956 * 179.97438 * 11 9 4
14 14 C 1.46506 * 120.00044 * 0.02562 * 13 11 9
15 15 C 1.46494 * 119.99772 * 179.97438 * 13 11 9
16 16 C 1.50697 * 109.47101 * 90.00511 * 15 13 11
17 17 H 1.08001 * 120.00066 * 359.97438 * 16 15 13
18 18 C 1.37875 * 120.00478 * 179.97438 * 16 15 13
19 19 N 1.31524 * 119.99727 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 120.00630 * 179.97438 * 18 16 15
21 21 H 1.48500 * 109.46932 * 90.00054 * 20 18 16
22 22 H 1.48496 * 109.47297 * 209.99852 * 20 18 16
23 23 H 1.48495 * 109.46820 * 330.00220 * 20 18 16
24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1
29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1
30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1
31 31 H 1.09005 * 110.63999 * 225.35670 * 7 5 4
32 32 H 1.09001 * 110.38933 * 102.80594 * 7 5 4
33 33 H 1.09002 * 110.97218 * 266.46364 * 8 7 5
34 34 H 1.09005 * 111.00017 * 142.72005 * 8 7 5
35 35 H 1.09001 * 109.46939 * 89.99478 * 14 13 11
36 36 H 1.08997 * 109.47008 * 209.99698 * 14 13 11
37 37 H 1.09001 * 109.47086 * 329.99735 * 14 13 11
38 38 H 1.08999 * 109.46871 * 209.99962 * 15 13 11
39 39 H 1.08994 * 109.47569 * 330.00100 * 15 13 11
40 40 H 0.96996 * 120.00117 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 7 2.0184 -0.6907 -1.1961
5 6 1.7434 -0.3117 -2.4562
6 8 1.0547 0.6390 -2.7609
7 6 2.4204 -1.2418 -3.4386
8 6 3.4724 -1.9923 -2.5894
9 6 2.8657 -1.8888 -1.1726
10 1 2.2646 -2.7715 -0.9542
11 6 3.9590 -1.7343 -0.1470
12 8 4.0334 -0.7188 0.5117
13 7 4.8535 -2.7252 0.0389
14 6 4.7632 -3.9522 -0.7565
15 6 5.9166 -2.5748 1.0354
16 6 5.4374 -3.0998 2.3642
17 1 4.4405 -3.5047 2.4572
18 6 6.2717 -3.0635 3.4614
19 7 7.4859 -2.5709 3.3481
20 14 5.6775 -3.7136 5.1087
21 1 6.0055 -5.1578 5.2183
22 1 6.3472 -2.9694 6.2053
23 1 4.2075 -3.5306 5.2119
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3634 0.5139 0.8900
27 1 1.8934 -0.5137 0.8900
28 1 1.6767 1.9564 -0.8900
29 1 1.6767 1.9563 0.8899
30 1 3.1300 1.4425 0.0005
31 1 2.9057 -0.6745 -4.2329
32 1 1.6983 -1.9424 -3.8578
33 1 4.4402 -1.4930 -2.6367
34 1 3.5569 -3.0330 -2.9026
35 1 5.3515 -3.8390 -1.6672
36 1 5.1492 -4.7904 -0.1765
37 1 3.7218 -4.1401 -1.0178
38 1 6.7945 -3.1373 0.7178
39 1 6.1763 -1.5208 1.1335
40 1 8.0730 -2.5456 4.1198
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000874172866.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:34
Heat of formation + Delta-G solvation = -88.798278 kcal
Electronic energy + Delta-G solvation = -21780.804339 eV
Core-core repulsion = 18594.824166 eV
Total energy + Delta-G solvation = -3185.980173 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.04927 -40.07678 -37.32033 -36.68887 -35.86461 -34.63883 -31.02526 -30.53528
-28.60192 -28.13725 -27.25708 -24.97420 -23.42604 -23.18374 -20.61699 -19.55042
-18.73226 -18.28354 -17.73569 -17.05654 -16.68517 -16.36137 -16.05365 -15.67789
-15.08057 -14.82022 -14.54167 -14.52912 -14.30048 -13.93255 -13.72503 -13.57581
-13.42632 -13.05115 -13.03337 -12.86375 -12.78865 -12.65353 -12.49027 -12.22489
-12.19724 -12.06402 -11.94040 -11.68667 -10.82136 -10.63447 -10.50968 -9.66583
-9.37927 -8.21877 -6.36294 1.36768 1.39555 1.49126 1.54794 1.77804
1.91665 2.34079 2.47301 3.08241 3.30810 3.46118 3.72161 3.95815
4.03737 4.10396 4.15658 4.32743 4.49503 4.55622 4.66649 4.70686
4.79584 4.80699 4.86117 4.91302 4.97781 5.01209 5.09420 5.10511
5.15731 5.25653 5.30640 5.57242 5.60212 5.85044 6.06973 6.20079
6.71116 6.79186 7.16424 7.29341 7.47479 8.84817
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.024251 B = 0.005660 C = 0.005017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1154.306311 B = 4945.703638 C = 5579.224959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.154 3.846
3 C -0.147 4.147
4 N -0.598 5.598
5 C 0.506 3.494
6 O -0.572 6.572
7 C -0.140 4.140
8 C -0.112 4.112
9 C 0.115 3.885
10 H 0.133 0.867
11 C 0.487 3.513
12 O -0.579 6.579
13 N -0.602 5.602
14 C 0.071 3.929
15 C 0.262 3.738
16 C -0.539 4.539
17 H 0.055 0.945
18 C 0.008 3.992
19 N -0.929 5.929
20 Si 0.964 3.036
21 H -0.263 1.263
22 H -0.285 1.285
23 H -0.273 1.273
24 H 0.064 0.936
25 H 0.057 0.943
26 H 0.077 0.923
27 H 0.075 0.925
28 H 0.053 0.947
29 H 0.070 0.930
30 H 0.038 0.962
31 H 0.115 0.885
32 H 0.140 0.860
33 H 0.073 0.927
34 H 0.146 0.854
35 H 0.080 0.920
36 H 0.065 0.935
37 H 0.099 0.901
38 H 0.025 0.975
39 H -0.005 1.005
40 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.589 -4.438 -13.310 17.578
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.051 3.949
3 C -0.205 4.205
4 N -0.330 5.330
5 C 0.296 3.704
6 O -0.452 6.452
7 C -0.180 4.180
8 C -0.149 4.149
9 C 0.008 3.992
10 H 0.150 0.850
11 C 0.274 3.726
12 O -0.459 6.459
13 N -0.333 5.333
14 C -0.071 4.071
15 C 0.140 3.860
16 C -0.577 4.577
17 H 0.073 0.927
18 C -0.191 4.191
19 N -0.569 5.569
20 Si 0.789 3.211
21 H -0.188 1.188
22 H -0.210 1.210
23 H -0.198 1.198
24 H 0.083 0.917
25 H 0.076 0.924
26 H 0.096 0.904
27 H 0.093 0.907
28 H 0.072 0.928
29 H 0.089 0.911
30 H 0.057 0.943
31 H 0.133 0.867
32 H 0.158 0.842
33 H 0.092 0.908
34 H 0.164 0.836
35 H 0.098 0.902
36 H 0.083 0.917
37 H 0.117 0.883
38 H 0.043 0.957
39 H 0.013 0.987
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -10.748 -3.372 -12.955 17.168
hybrid contribution 0.395 0.157 1.543 1.600
sum -10.353 -3.215 -11.412 15.740
Atomic orbital electron populations
1.22106 0.93555 1.02623 1.02912 1.20876 0.94134 0.92965 0.86881
1.21944 1.00610 0.96134 1.01856 1.48344 1.49436 1.28622 1.06630
1.21667 0.79881 0.84671 0.84200 1.90648 1.41718 1.30924 1.81924
1.22427 0.99367 0.98876 0.97309 1.22796 0.98125 1.05368 0.88653
1.21872 0.90712 0.89755 0.96851 0.85005 1.21263 0.83660 0.83232
0.84399 1.90667 1.74361 1.30885 1.49958 1.48093 1.29420 1.17547
1.38257 1.22142 1.04011 0.85482 0.95478 1.18722 0.85634 0.95380
0.86266 1.21701 0.99923 1.40671 0.95444 0.92722 1.25825 0.94951
0.95483 1.02851 1.70050 1.08253 1.46555 1.32056 0.85462 0.78241
0.78830 0.78565 1.18778 1.21026 1.19765 0.91666 0.92402 0.90441
0.90716 0.92807 0.91104 0.94265 0.86695 0.84197 0.90790 0.83584
0.90184 0.91651 0.88264 0.95683 0.98651 0.92511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.11 9.19 71.98 0.66 -3.45 16
2 C 0.15 5.01 2.38 44.99 0.11 5.12 16
3 C -0.15 -5.12 9.03 71.98 0.65 -4.47 16
4 N -0.60 -17.55 2.58 -774.51 -2.00 -19.55 16
5 C 0.51 14.08 7.41 87.90 0.65 14.73 16
6 O -0.57 -19.90 15.12 -3.04 -0.05 -19.95 16
7 C -0.14 -2.25 6.86 30.59 0.21 -2.04 16
8 C -0.11 -1.79 5.48 31.65 0.17 -1.62 16
9 C 0.12 2.88 2.79 44.70 0.12 3.00 16
10 H 0.13 2.50 7.32 -2.38 -0.02 2.48 16
11 C 0.49 18.33 6.73 87.66 0.59 18.92 16
12 O -0.58 -27.93 12.52 -3.03 -0.04 -27.97 16
13 N -0.60 -22.79 2.86 -851.15 -2.43 -25.23 16
14 C 0.07 1.68 9.02 127.77 1.15 2.83 16
15 C 0.26 13.38 5.16 85.63 0.44 13.82 16
16 C -0.54 -29.82 9.39 25.60 0.24 -29.58 16
17 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16
18 C 0.01 0.44 5.46 84.65 0.46 0.90 16
19 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16
20 Si 0.96 43.92 29.54 68.60 2.03 45.95 16
21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16
22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
25 H 0.06 1.68 6.75 -2.39 -0.02 1.66 16
26 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16
27 H 0.07 2.80 6.57 -2.39 -0.02 2.78 16
28 H 0.05 1.89 6.82 -2.39 -0.02 1.87 16
29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
30 H 0.04 1.57 7.04 -2.39 -0.02 1.56 16
31 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16
32 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.07 1.45 7.91 -2.39 -0.02 1.43 16
34 H 0.15 1.03 7.16 -2.38 -0.02 1.01 16
35 H 0.08 1.43 7.91 -2.39 -0.02 1.41 16
36 H 0.06 1.72 8.07 -2.39 -0.02 1.70 16
37 H 0.10 1.53 5.97 -2.39 -0.01 1.52 16
38 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16
39 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16
40 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16
Total: -1.00 -78.06 319.96 4.29 -73.78
By element:
Atomic # 1 Polarization: 8.75 SS G_CDS: 1.02 Total: 9.78 kcal
Atomic # 6 Polarization: 12.71 SS G_CDS: 5.47 Total: 18.18 kcal
Atomic # 7 Polarization: -95.62 SS G_CDS: -4.14 Total: -99.76 kcal
Atomic # 8 Polarization: -47.83 SS G_CDS: -0.08 Total: -47.92 kcal
Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal
Total: -78.06 4.29 -73.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000874172866.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.019 kcal
(2) G-P(sol) polarization free energy of solvation -78.065 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.084 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds