Wall clock time and date at job start Mon Mar 30 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.47872 * 126.94058 * 0.02677 * 8 6 5 10 10 C 1.56018 * 105.09895 * 181.97674 * 9 8 6 11 11 H 1.08999 * 116.24595 * 158.83479 * 10 9 8 12 12 C 1.57083 * 99.60967 * 32.80471 * 10 9 8 13 13 C 1.49282 * 126.94510 * 179.70639 * 8 6 5 14 14 H 1.08996 * 116.15741 * 16.72480 * 13 8 6 15 15 C 1.56018 * 104.09211 * 246.72123 * 13 8 6 16 16 N 1.47358 * 105.15030 * 288.60729 * 15 13 8 17 17 C 1.36940 * 126.79410 * 182.06476 * 16 15 13 18 18 H 1.07992 * 120.00459 * 180.28608 * 17 16 15 19 19 C 1.38812 * 119.99830 * 0.28099 * 17 16 15 20 20 N 1.31624 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47209 * 90.00066 * 21 19 17 23 23 H 1.48501 * 109.46913 * 209.99824 * 21 19 17 24 24 H 1.48493 * 109.47238 * 329.99754 * 21 19 17 25 25 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 31 31 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 32 32 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 33 33 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 34 34 H 1.08999 * 110.31562 * 300.88037 * 9 8 6 35 35 H 1.09000 * 110.31614 * 62.96977 * 9 8 6 36 36 H 1.09005 * 112.36759 * 64.27233 * 12 10 9 37 37 H 1.09004 * 112.36476 * 191.62136 * 12 10 9 38 38 H 1.08996 * 110.31477 * 47.68013 * 15 13 8 39 39 H 1.09005 * 110.31158 * 169.76032 * 15 13 8 40 40 H 0.97000 * 120.00399 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9190 -2.1685 3.5191 10 6 3.1250 -3.3965 4.4592 11 1 3.9881 -3.3555 5.1236 12 6 3.1162 -4.5485 3.3913 13 6 1.7573 -4.0889 2.7428 14 1 1.3780 -4.6981 1.9224 15 6 0.8715 -4.0004 4.0241 16 7 1.7910 -3.5912 5.1004 17 6 1.4807 -3.4193 6.4231 18 1 2.2445 -3.1106 7.1213 19 6 0.1842 -3.6419 6.8664 20 7 -0.7467 -4.0186 6.0155 21 14 -0.2393 -3.4068 8.6704 22 1 -0.6669 -2.0033 8.8997 23 1 -1.3428 -4.3277 9.0439 24 1 0.9549 -3.7025 9.5019 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 3.8776 -1.8237 3.1314 35 1 2.4150 -1.3622 4.0521 36 1 3.9547 -4.4782 2.6984 37 1 3.0459 -5.5361 3.8473 38 1 0.0866 -3.2560 3.8907 39 1 0.4351 -4.9733 4.2504 40 1 -1.6526 -4.1745 6.3253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879217368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:07 Heat of formation + Delta-G solvation = -41.456192 kcal Electronic energy + Delta-G solvation = -21863.848953 eV Core-core repulsion = 18679.921687 eV Total energy + Delta-G solvation = -3183.927266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96185 -40.70373 -37.75948 -35.61861 -34.91646 -33.11246 -30.69273 -30.28120 -28.36159 -28.27742 -27.00442 -25.52073 -23.56542 -21.50135 -21.30004 -20.18875 -19.34930 -18.26139 -17.73551 -17.35376 -16.88554 -16.27924 -15.85858 -15.57501 -15.08932 -14.94909 -14.57954 -13.82532 -13.70606 -13.43265 -13.30846 -13.18186 -13.12470 -12.87187 -12.85709 -12.84148 -12.69813 -12.51385 -12.30661 -12.29134 -12.12232 -12.03859 -11.90270 -11.54751 -11.36576 -11.08469 -10.75120 -9.63226 -8.92144 -7.84610 -5.20631 1.11733 1.47301 1.48784 1.57519 1.81420 2.48807 2.92311 3.32816 3.41300 3.70800 3.77560 3.81608 3.87514 3.96390 3.99676 4.17885 4.44403 4.56991 4.61349 4.62737 4.70185 4.75963 4.82897 4.87679 4.88310 4.92620 5.01390 5.09669 5.13958 5.23999 5.29245 5.36504 5.44491 5.47678 5.54755 5.65484 6.10474 6.58989 7.03735 7.31436 7.70991 8.40660 9.26580 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.005364 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.892687 B = 5219.141520 C = 5553.618873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 C -0.132 4.132 4 C -0.174 4.174 5 O -0.370 6.370 6 C 0.662 3.338 7 O -0.600 6.600 8 N -0.601 5.601 9 C 0.097 3.903 10 C 0.137 3.863 11 H 0.140 0.860 12 C -0.127 4.127 13 C 0.122 3.878 14 H 0.124 0.876 15 C 0.186 3.814 16 N -0.616 5.616 17 C -0.231 4.231 18 H 0.096 0.904 19 C -0.071 4.071 20 N -0.958 5.958 21 Si 0.978 3.022 22 H -0.292 1.292 23 H -0.300 1.300 24 H -0.261 1.261 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.090 0.910 38 H -0.007 1.007 39 H 0.026 0.974 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.128 7.010 -11.498 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.083 3.917 3 C -0.189 4.189 4 C -0.232 4.232 5 O -0.285 6.285 6 C 0.418 3.582 7 O -0.493 6.493 8 N -0.342 5.342 9 C -0.027 4.027 10 C 0.030 3.970 11 H 0.157 0.843 12 C -0.166 4.166 13 C 0.020 3.980 14 H 0.142 0.858 15 C 0.060 3.940 16 N -0.340 5.340 17 C -0.360 4.360 18 H 0.114 0.886 19 C -0.264 4.264 20 N -0.608 5.608 21 Si 0.807 3.193 22 H -0.220 1.220 23 H -0.227 1.227 24 H -0.185 1.185 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.012 0.988 39 H 0.044 0.956 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.707 6.972 -11.693 16.719 hybrid contribution -1.303 0.055 0.987 1.636 sum 8.403 7.027 -10.706 15.317 Atomic orbital electron populations 1.22474 0.94795 1.03260 1.03206 1.22480 0.94187 0.93100 0.81899 1.21866 1.02575 0.90339 1.04135 1.22432 1.01731 1.02025 0.96962 1.86328 1.71631 1.22886 1.47633 1.17683 0.78538 0.80696 0.81332 1.90830 1.42796 1.71231 1.44421 1.48084 1.52465 1.13106 1.20508 1.23173 0.93802 0.98366 0.87356 1.23610 0.89417 0.91811 0.92129 0.84270 1.24151 0.95185 0.99346 0.97931 1.24345 0.98245 0.79459 0.95923 0.85842 1.21461 0.90346 0.96804 0.85369 1.45380 1.05409 1.79333 1.03928 1.19559 0.94653 1.37867 0.83899 0.88613 1.25672 0.96226 1.02504 1.01968 1.70158 1.01861 1.54305 1.34432 0.85077 0.77700 0.76637 0.79923 1.21973 1.22690 1.18493 0.93187 0.88334 0.92652 0.90780 0.87420 0.92013 0.92308 0.88652 0.91558 0.89004 0.93941 0.87699 0.89137 0.98849 0.95557 0.94670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.06 8.37 71.98 0.60 -4.46 16 2 C 0.12 3.19 1.13 -10.79 -0.01 3.18 16 3 C -0.13 -2.46 8.85 71.98 0.64 -1.82 16 4 C -0.17 -4.18 8.37 71.98 0.60 -3.58 16 5 O -0.37 -12.80 9.56 -55.45 -0.53 -13.33 16 6 C 0.66 26.20 7.98 129.79 1.04 27.24 16 7 O -0.60 -25.66 12.23 19.80 0.24 -25.41 16 8 N -0.60 -23.34 2.95 -897.71 -2.64 -25.98 16 9 C 0.10 3.41 6.39 87.16 0.56 3.97 16 10 C 0.14 4.82 5.53 46.93 0.26 5.08 16 11 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 12 C -0.13 -3.94 6.84 33.59 0.23 -3.71 16 13 C 0.12 4.75 5.25 47.06 0.25 5.00 16 14 H 0.12 4.61 8.06 -2.39 -0.02 4.59 16 15 C 0.19 9.39 4.74 87.26 0.41 9.80 16 16 N -0.62 -29.94 3.01 -649.84 -1.95 -31.89 16 17 C -0.23 -12.35 10.37 84.03 0.87 -11.47 16 18 H 0.10 4.72 7.83 -2.91 -0.02 4.69 16 19 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 20 N -0.96 -58.76 10.53 21.65 0.23 -58.53 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.51 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.95 5.88 -2.38 -0.01 1.94 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.79 5.88 -2.38 -0.01 1.78 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.09 2.81 8.14 -2.38 -0.02 2.80 16 38 H -0.01 -0.40 7.68 -2.39 -0.02 -0.42 16 39 H 0.03 1.47 7.42 -2.38 -0.02 1.45 16 40 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -71.19 317.23 4.29 -66.89 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 1.01 Total: 15.08 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 5.91 Total: 25.66 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -4.37 Total: -116.41 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.29 Total: -38.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.19 4.29 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879217368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.438 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds