Wall clock time and date at job start Mon Mar 30 2020 00:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47273 * 2 1 4 4 C 1.50697 * 109.47068 * 239.99467 * 2 1 3 5 5 H 1.08005 * 120.00495 * 240.00050 * 4 2 1 6 6 C 1.37877 * 120.00077 * 60.00530 * 4 2 1 7 7 N 1.31522 * 119.99745 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00221 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46973 * 89.99694 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99741 * 8 6 4 11 11 H 1.48496 * 109.46994 * 329.99755 * 8 6 4 12 12 C 1.53003 * 109.46942 * 119.99872 * 2 1 3 13 13 N 1.46500 * 109.47239 * 299.99714 * 12 2 1 14 14 C 1.34774 * 120.00298 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00083 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47186 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.44002 * 56.08346 * 17 16 14 19 19 C 1.54861 * 110.60634 * 178.68655 * 17 16 14 20 20 C 1.54480 * 101.66110 * 93.93195 * 19 17 16 21 21 N 1.46760 * 105.54782 * 25.43666 * 20 19 17 22 22 C 1.34415 * 111.30303 * 342.93897 * 21 20 19 23 23 O 1.21284 * 124.94104 * 180.39099 * 22 21 20 24 24 H 1.08995 * 109.47073 * 300.00120 * 1 2 3 25 25 H 1.08994 * 109.47027 * 59.99994 * 1 2 3 26 26 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46503 * 299.99542 * 3 2 1 29 29 H 1.08995 * 109.47169 * 59.99939 * 3 2 1 30 30 H 0.96992 * 119.99797 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47100 * 180.02562 * 12 2 1 32 32 H 1.09000 * 109.47265 * 60.00229 * 12 2 1 33 33 H 0.97000 * 119.99762 * 0.02562 * 13 12 2 34 34 H 1.09003 * 109.47625 * 60.00270 * 16 14 13 35 35 H 1.08999 * 109.47199 * 299.99665 * 16 14 13 36 36 H 1.08997 * 111.03764 * 335.83926 * 19 17 16 37 37 H 1.09000 * 110.99735 * 212.00821 * 19 17 16 38 38 H 1.09002 * 110.24746 * 266.39097 * 20 19 17 39 39 H 1.09002 * 110.24236 * 144.47820 * 20 19 17 40 40 H 0.97010 * 124.34794 * 162.95909 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0079 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5740 -1.4774 3.7809 16 6 1.3740 0.2189 4.8999 17 6 1.8841 -0.5023 6.1492 18 1 2.9717 -0.5719 6.1312 19 6 1.4093 0.2259 7.4309 20 6 0.1144 -0.5465 7.7672 21 7 0.2835 -1.8767 7.1707 22 6 1.2671 -1.8795 6.2546 23 8 1.6102 -2.8458 5.6068 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7089 1.1611 -3.4844 31 1 3.1300 -0.7209 1.2496 32 1 1.6767 -1.7489 1.2493 33 1 0.9938 0.7579 2.3564 34 1 0.2840 0.2189 4.8996 35 1 1.7374 1.2465 4.9003 36 1 1.1960 1.2754 7.2284 37 1 2.1423 0.1257 8.2313 38 1 -0.7488 -0.0441 7.3304 39 1 -0.0052 -0.6299 8.8474 40 1 -0.2466 -2.6540 7.4070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880270339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:58 Heat of formation + Delta-G solvation = -107.999341 kcal Electronic energy + Delta-G solvation = -20984.856986 eV Core-core repulsion = 17798.044193 eV Total energy + Delta-G solvation = -3186.812793 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58997 -40.22053 -38.07126 -37.33885 -34.92811 -33.74801 -32.65134 -29.89930 -27.71849 -27.55966 -27.24153 -25.80528 -22.57805 -21.82117 -20.72216 -20.53568 -18.57411 -18.07397 -17.63306 -16.99711 -16.76549 -16.57154 -15.98983 -15.71174 -14.95824 -14.89738 -14.68532 -14.45218 -14.26053 -13.96907 -13.55604 -13.35497 -13.19951 -13.08231 -12.93027 -12.65422 -12.61171 -12.24389 -12.14344 -12.10698 -11.82442 -11.48450 -11.25995 -10.82333 -10.70436 -10.50060 -10.40192 -9.95485 -9.84196 -8.03467 -6.18952 1.40742 1.43294 1.52138 1.68015 1.85959 2.37125 2.52615 2.55598 3.19607 3.50059 3.61440 3.82781 4.09097 4.25600 4.40593 4.48310 4.52900 4.57515 4.71306 4.73705 4.83865 4.98284 5.01026 5.06351 5.12663 5.17285 5.19761 5.27611 5.39261 5.65952 5.66573 5.67616 6.05220 6.12168 6.15758 6.21924 6.43748 6.78805 6.84587 7.41076 7.48428 7.51151 8.95366 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040365 B = 0.003883 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.496903 B = 7208.527695 C = 7464.074261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 C -0.117 4.117 4 C -0.532 4.532 5 H 0.038 0.962 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.151 3.849 13 N -0.715 5.715 14 C 0.480 3.520 15 O -0.572 6.572 16 C -0.113 4.113 17 C -0.110 4.110 18 H 0.090 0.910 19 C -0.116 4.116 20 C 0.095 3.905 21 N -0.733 5.733 22 C 0.499 3.501 23 O -0.570 6.570 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.011 0.989 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.409 0.591 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 6.812 21.943 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.175 4.175 4 C -0.571 4.571 5 H 0.056 0.944 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.368 5.368 14 C 0.267 3.733 15 O -0.451 6.451 16 C -0.153 4.153 17 C -0.133 4.133 18 H 0.109 0.891 19 C -0.153 4.153 20 C -0.028 4.028 21 N -0.389 5.389 22 C 0.285 3.715 23 O -0.448 6.448 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.246 0.754 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.283 5.836 21.510 22.696 hybrid contribution 0.059 -1.115 -1.345 1.748 sum -4.224 4.721 20.165 21.137 Atomic orbital electron populations 1.21651 0.97064 0.98330 1.00577 1.18368 0.93292 0.93310 0.90070 1.21633 0.97826 0.97426 1.00624 1.21282 1.31812 1.12104 0.91897 0.94358 1.25422 0.95128 0.95602 1.00810 1.69894 1.36885 1.23134 1.23638 0.85781 0.78571 0.78579 0.80011 1.20571 1.20366 1.20347 1.21139 0.96610 0.94587 0.84991 1.46106 1.53397 1.32062 1.05215 1.21682 0.80744 0.84770 0.86108 1.90807 1.39437 1.27562 1.87256 1.21635 1.03777 1.01623 0.88272 1.21783 1.01929 0.92478 0.97090 0.89145 1.22821 0.96889 1.01329 0.94251 1.22404 0.98998 0.81095 1.00306 1.46403 1.36738 1.14380 1.41361 1.21479 0.80478 0.91029 0.78523 1.90804 1.65514 1.41066 1.47367 0.94077 0.91716 0.96980 0.96456 0.91840 0.93894 0.92932 0.94948 0.95867 0.75365 0.86584 0.83642 0.85426 0.88605 0.89114 0.87636 0.75118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 4 C -0.53 -29.39 8.01 25.60 0.21 -29.19 16 5 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 6 C 0.03 1.63 5.15 84.65 0.44 2.07 16 7 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 8 Si 0.94 43.78 29.54 68.60 2.03 45.80 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.15 6.92 4.50 86.38 0.39 7.31 16 13 N -0.71 -25.39 4.96 -463.06 -2.30 -27.68 16 14 C 0.48 16.71 7.61 87.66 0.67 17.37 16 15 O -0.57 -26.54 13.68 18.25 0.25 -26.29 16 16 C -0.11 -2.23 5.13 29.85 0.15 -2.08 16 17 C -0.11 -2.25 2.57 -10.72 -0.03 -2.28 16 18 H 0.09 2.23 8.02 -2.39 -0.02 2.21 16 19 C -0.12 -0.89 6.73 31.73 0.21 -0.67 16 20 C 0.09 0.70 7.78 86.83 0.68 1.37 16 21 N -0.73 -12.94 6.24 -459.81 -2.87 -15.81 16 22 C 0.50 14.34 7.39 87.90 0.65 14.99 16 23 O -0.57 -24.57 15.85 18.25 0.29 -24.28 16 24 H 0.04 1.54 6.86 -2.39 -0.02 1.52 16 25 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 29 H 0.04 1.55 6.86 -2.39 -0.02 1.54 16 30 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 11.96 6.16 -92.71 -0.57 11.38 16 34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 0.19 7.91 -2.39 -0.02 0.17 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.41 6.49 8.96 -92.70 -0.83 5.66 16 Total: -1.00 -80.29 318.72 1.75 -78.54 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.35 Total: 16.07 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 4.50 Total: 1.80 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.96 Total: -91.64 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: 0.54 Total: -50.57 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -80.29 1.75 -78.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880270339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.460 kcal (2) G-P(sol) polarization free energy of solvation -80.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds