Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47226 * 2 1 4 4 H 1.09005 * 109.59707 * 343.31175 * 3 2 1 5 5 C 1.51339 * 109.73101 * 222.91829 * 3 2 1 6 6 O 1.21281 * 120.35262 * 128.40666 * 5 3 2 7 7 N 1.34252 * 119.29502 * 308.42462 * 5 3 2 8 8 C 1.46697 * 120.37793 * 357.12051 * 7 5 3 9 9 C 1.53038 * 109.06879 * 288.73287 * 8 7 5 10 10 C 1.51969 * 110.21781 * 88.58299 * 9 8 7 11 11 N 1.46068 * 111.76268 * 297.48183 * 10 9 8 12 12 C 1.34772 * 119.81056 * 242.98262 * 11 10 9 13 13 O 1.21279 * 119.99955 * 185.78305 * 12 11 10 14 14 C 1.50702 * 120.00193 * 5.78184 * 12 11 10 15 15 H 1.09002 * 109.46648 * 30.15549 * 14 12 11 16 16 C 1.52998 * 109.47197 * 270.15548 * 14 12 11 17 17 C 1.50701 * 109.47189 * 150.15104 * 14 12 11 18 18 H 1.07995 * 119.99642 * 0.02562 * 17 14 12 19 19 C 1.37871 * 120.00040 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99972 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00285 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.46882 * 90.00112 * 21 19 17 23 23 H 1.48496 * 109.47207 * 210.00224 * 21 19 17 24 24 H 1.48497 * 109.47004 * 330.00264 * 21 19 17 25 25 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47357 * 299.99879 * 1 2 3 27 27 H 1.09001 * 109.47523 * 60.00269 * 1 2 3 28 28 H 1.09002 * 109.46680 * 239.99855 * 2 1 3 29 29 H 1.08997 * 109.46968 * 120.00222 * 2 1 3 30 30 H 0.97003 * 119.80896 * 177.13652 * 7 5 3 31 31 H 1.09002 * 109.54029 * 48.60426 * 8 7 5 32 32 H 1.08998 * 109.54164 * 168.77049 * 8 7 5 33 33 H 1.08999 * 109.35273 * 208.88075 * 9 8 7 34 34 H 1.08992 * 109.35641 * 328.59649 * 9 8 7 35 35 H 1.09003 * 108.93545 * 176.89200 * 10 9 8 36 36 H 1.08993 * 108.95384 * 58.08989 * 10 9 8 37 37 H 1.08997 * 109.46962 * 54.40266 * 16 14 12 38 38 H 1.09000 * 109.46759 * 174.39943 * 16 14 12 39 39 H 1.09000 * 109.47050 * 294.39894 * 16 14 12 40 40 H 0.97003 * 120.00421 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.2345 2.1150 -0.2949 5 6 3.1939 1.5764 -0.9700 6 8 3.1871 2.4474 -1.8140 7 7 4.2249 0.7206 -0.8867 8 6 4.2636 -0.2933 0.1728 9 6 4.5333 0.3942 1.5132 10 6 3.2245 0.8186 2.1585 11 7 2.5109 1.7978 1.3428 12 6 2.2889 3.0368 1.8245 13 8 1.6074 3.8187 1.1960 14 6 2.8873 3.4505 3.1443 15 1 3.8258 2.9185 3.3004 16 6 1.9140 3.1102 4.2747 17 6 3.1470 4.9350 3.1348 18 1 2.9028 5.5202 2.2607 19 6 3.6965 5.5458 4.2420 20 7 3.9944 4.8329 5.3062 21 14 4.0178 7.3859 4.2305 22 1 2.8196 8.1008 4.7390 23 1 5.1821 7.6905 5.1003 24 1 4.3070 7.8292 2.8431 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.9485 0.7731 -1.5305 31 1 3.3062 -0.8125 0.2157 32 1 5.0577 -1.0098 -0.0370 33 1 5.0559 -0.2966 2.1748 34 1 5.1530 1.2756 1.3489 35 1 3.4365 1.2550 3.1346 36 1 2.5943 -0.0606 2.2922 37 1 1.6488 2.0544 4.2202 38 1 2.3860 3.3173 5.2351 39 1 1.0139 3.7167 4.1740 40 1 4.3813 5.2625 6.0851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886502295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -61.696615 kcal Electronic energy + Delta-G solvation = -22201.628632 eV Core-core repulsion = 19016.823675 eV Total energy + Delta-G solvation = -3184.804957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78807 -38.47078 -36.72830 -34.59189 -33.98731 -33.16294 -30.93980 -30.40664 -27.10655 -25.72273 -25.19879 -23.32291 -22.71278 -20.54969 -20.03397 -18.67839 -17.14137 -17.01040 -16.19911 -15.92274 -15.56841 -14.77717 -14.54999 -14.07225 -13.84280 -13.72679 -13.62045 -13.09979 -12.79290 -12.67143 -12.61561 -12.15465 -11.77276 -11.55774 -11.44651 -11.16507 -11.02462 -10.95427 -10.71736 -10.66177 -10.50761 -10.29378 -10.05927 -9.82901 -9.04267 -8.97332 -8.62112 -8.33497 -8.16526 -6.06545 -4.09005 2.61814 3.32693 3.33979 3.38955 3.45869 3.64454 3.67386 4.45562 4.50605 4.75691 4.77998 4.89394 4.97688 5.19246 5.26210 5.27965 5.41030 5.49155 5.56874 5.69533 5.76688 5.83247 5.88966 6.04037 6.10523 6.22634 6.29060 6.61544 6.79366 6.90096 6.93315 6.97803 7.29590 7.39581 7.72795 7.90256 8.02687 8.31830 8.36694 8.96341 9.13665 9.55872 11.01240 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.006118 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.552273 B = 4575.494435 C = 4634.866690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.125 3.875 4 H 0.124 0.876 5 C 0.513 3.487 6 O -0.537 6.537 7 N -0.727 5.727 8 C 0.088 3.912 9 C -0.163 4.163 10 C 0.098 3.902 11 N -0.615 5.615 12 C 0.523 3.477 13 O -0.533 6.533 14 C 0.034 3.966 15 H 0.049 0.951 16 C -0.129 4.129 17 C -0.501 4.501 18 H 0.068 0.932 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.012 0.988 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 -16.543 -5.579 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.018 3.982 4 H 0.141 0.859 5 C 0.298 3.702 6 O -0.412 6.412 7 N -0.380 5.380 8 C -0.036 4.036 9 C -0.202 4.202 10 C -0.025 4.025 11 N -0.353 5.353 12 C 0.314 3.686 13 O -0.407 6.407 14 C 0.013 3.987 15 H 0.066 0.934 16 C -0.187 4.187 17 C -0.539 4.539 18 H 0.086 0.914 19 C -0.139 4.139 20 N -0.535 5.535 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.658 -15.597 -6.040 16.739 hybrid contribution 0.724 0.870 -0.153 1.142 sum 0.067 -14.728 -6.193 15.977 Atomic orbital electron populations 1.21825 0.94600 1.01706 1.02720 1.22203 0.97325 0.95092 1.03113 1.21446 0.95020 0.98284 0.83470 0.85851 1.21353 0.84235 0.80147 0.84491 1.90740 1.79494 1.33222 1.37706 1.45999 1.24095 1.35187 1.32763 1.22154 1.03977 0.90409 0.87059 1.22313 0.98975 1.02093 0.96855 1.21416 0.91956 0.92834 0.96249 1.48193 1.58698 1.13961 1.14459 1.22218 0.78737 0.78790 0.88834 1.90561 1.38537 1.50893 1.60741 1.18920 0.95143 0.98303 0.86298 0.93371 1.21715 0.98834 0.95812 1.02325 1.21062 1.40530 0.91253 1.01097 0.91399 1.24902 0.95224 0.98546 0.95266 1.69866 1.43678 1.35520 1.04411 0.86456 0.77723 0.85024 0.78093 1.20514 1.21227 1.19775 0.92406 0.92017 0.92391 0.90868 0.89250 0.76891 0.88950 0.89861 0.89441 0.90329 0.87523 0.91522 0.96927 0.89021 0.94412 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.65 37.16 0.36 -1.25 16 2 C -0.14 -1.54 4.00 -26.73 -0.11 -1.65 16 3 C 0.13 2.04 2.57 -68.68 -0.18 1.86 16 4 H 0.12 2.37 6.66 -51.93 -0.35 2.02 16 5 C 0.51 8.83 6.82 -10.91 -0.07 8.76 16 6 O -0.54 -11.75 17.95 5.56 0.10 -11.65 16 7 N -0.73 -9.08 5.24 -60.03 -0.31 -9.39 16 8 C 0.09 0.79 6.26 -3.92 -0.02 0.77 16 9 C -0.16 -1.79 5.91 -27.24 -0.16 -1.95 16 10 C 0.10 1.33 5.23 -4.80 -0.03 1.30 16 11 N -0.62 -10.93 2.59 -167.91 -0.43 -11.36 16 12 C 0.52 12.21 6.70 -10.99 -0.07 12.13 16 13 O -0.53 -14.50 15.38 5.56 0.09 -14.41 16 14 C 0.03 0.85 1.77 -92.92 -0.16 0.68 16 15 H 0.05 1.18 6.38 -51.93 -0.33 0.85 16 16 C -0.13 -2.97 8.63 37.16 0.32 -2.65 16 17 C -0.50 -14.36 8.32 -34.44 -0.29 -14.65 16 18 H 0.07 2.09 7.13 -52.49 -0.37 1.71 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.90 -24.78 11.38 55.43 0.63 -24.15 16 21 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.71 6.97 -51.93 -0.36 0.35 16 29 H 0.09 0.84 4.00 -51.93 -0.21 0.64 16 30 H 0.40 4.42 8.93 -40.82 -0.36 4.05 16 31 H 0.09 0.73 3.67 -51.93 -0.19 0.54 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.11 1.63 4.90 -51.93 -0.25 1.38 16 36 H 0.07 0.70 6.14 -51.93 -0.32 0.38 16 37 H 0.01 0.23 7.71 -51.93 -0.40 -0.17 16 38 H 0.09 2.27 6.24 -51.93 -0.32 1.94 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 308.49 15.07 4.65 4.65 Total: -1.00 -34.75 308.49 -6.38 -41.13 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.56 Total: 3.18 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.51 Total: 4.98 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.12 Total: -44.90 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: 0.19 Total: -26.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.75 -6.38 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886502295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.569 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds