Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47226 * 2 1 4 4 H 1.09005 * 109.59707 * 343.31175 * 3 2 1 5 5 C 1.51339 * 109.73101 * 222.91829 * 3 2 1 6 6 O 1.21281 * 120.35262 * 128.40666 * 5 3 2 7 7 N 1.34252 * 119.29502 * 308.42462 * 5 3 2 8 8 C 1.46697 * 120.37793 * 357.12051 * 7 5 3 9 9 C 1.53038 * 109.06879 * 288.73287 * 8 7 5 10 10 C 1.51969 * 110.21781 * 88.58299 * 9 8 7 11 11 N 1.46068 * 111.76268 * 297.48183 * 10 9 8 12 12 C 1.34772 * 119.81056 * 242.98262 * 11 10 9 13 13 O 1.21279 * 119.99955 * 185.78305 * 12 11 10 14 14 C 1.50702 * 120.00193 * 5.78184 * 12 11 10 15 15 H 1.09002 * 109.46648 * 30.15549 * 14 12 11 16 16 C 1.52998 * 109.47197 * 270.15548 * 14 12 11 17 17 C 1.50701 * 109.47189 * 150.15104 * 14 12 11 18 18 H 1.07995 * 119.99642 * 0.02562 * 17 14 12 19 19 C 1.37871 * 120.00040 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99972 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00285 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.46882 * 90.00112 * 21 19 17 23 23 H 1.48496 * 109.47207 * 210.00224 * 21 19 17 24 24 H 1.48497 * 109.47004 * 330.00264 * 21 19 17 25 25 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47357 * 299.99879 * 1 2 3 27 27 H 1.09001 * 109.47523 * 60.00269 * 1 2 3 28 28 H 1.09002 * 109.46680 * 239.99855 * 2 1 3 29 29 H 1.08997 * 109.46968 * 120.00222 * 2 1 3 30 30 H 0.97003 * 119.80896 * 177.13652 * 7 5 3 31 31 H 1.09002 * 109.54029 * 48.60426 * 8 7 5 32 32 H 1.08998 * 109.54164 * 168.77049 * 8 7 5 33 33 H 1.08999 * 109.35273 * 208.88075 * 9 8 7 34 34 H 1.08992 * 109.35641 * 328.59649 * 9 8 7 35 35 H 1.09003 * 108.93545 * 176.89200 * 10 9 8 36 36 H 1.08993 * 108.95384 * 58.08989 * 10 9 8 37 37 H 1.08997 * 109.46962 * 54.40266 * 16 14 12 38 38 H 1.09000 * 109.46759 * 174.39943 * 16 14 12 39 39 H 1.09000 * 109.47050 * 294.39894 * 16 14 12 40 40 H 0.97003 * 120.00421 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.2345 2.1150 -0.2949 5 6 3.1939 1.5764 -0.9700 6 8 3.1871 2.4474 -1.8140 7 7 4.2249 0.7206 -0.8867 8 6 4.2636 -0.2933 0.1728 9 6 4.5333 0.3942 1.5132 10 6 3.2245 0.8186 2.1585 11 7 2.5109 1.7978 1.3428 12 6 2.2889 3.0368 1.8245 13 8 1.6074 3.8187 1.1960 14 6 2.8873 3.4505 3.1443 15 1 3.8258 2.9185 3.3004 16 6 1.9140 3.1102 4.2747 17 6 3.1470 4.9350 3.1348 18 1 2.9028 5.5202 2.2607 19 6 3.6965 5.5458 4.2420 20 7 3.9944 4.8329 5.3062 21 14 4.0178 7.3859 4.2305 22 1 2.8196 8.1008 4.7390 23 1 5.1821 7.6905 5.1003 24 1 4.3070 7.8292 2.8431 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.9485 0.7731 -1.5305 31 1 3.3062 -0.8125 0.2157 32 1 5.0577 -1.0098 -0.0370 33 1 5.0559 -0.2966 2.1748 34 1 5.1530 1.2756 1.3489 35 1 3.4365 1.2550 3.1346 36 1 2.5943 -0.0606 2.2922 37 1 1.6488 2.0544 4.2202 38 1 2.3860 3.3173 5.2351 39 1 1.0139 3.7167 4.1740 40 1 4.3813 5.2625 6.0851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886502295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -88.254906 kcal Electronic energy + Delta-G solvation = -22202.780286 eV Core-core repulsion = 19016.823675 eV Total energy + Delta-G solvation = -3185.956611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11549 -40.11079 -38.13838 -35.96789 -35.73661 -34.49460 -32.39091 -32.06463 -28.32500 -27.30556 -26.81366 -24.54403 -24.27012 -21.69311 -21.35100 -20.14734 -18.65821 -18.30975 -17.96942 -17.60929 -16.98148 -16.46741 -15.95897 -15.43587 -15.27092 -14.98431 -14.82814 -14.55043 -14.40096 -14.03953 -13.66122 -13.51662 -13.18253 -13.00567 -12.94890 -12.72027 -12.65711 -12.43924 -12.30450 -12.13799 -12.10140 -11.98699 -11.53885 -11.09732 -11.08153 -10.64109 -10.31575 -10.07791 -9.61448 -8.20996 -6.30406 1.23560 1.35620 1.37059 1.48469 1.80864 2.20435 2.34782 2.42530 3.08516 3.36927 3.70379 3.92317 3.93413 4.00353 4.15411 4.29074 4.44023 4.48740 4.63446 4.69442 4.72586 4.76363 4.88344 4.91649 5.00198 5.01216 5.03599 5.09780 5.34722 5.36644 5.43166 5.60214 5.69778 5.85349 5.90431 6.11315 6.15951 6.49958 6.73049 7.13047 7.32080 7.41633 8.84930 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.006118 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.552273 B = 4575.494435 C = 4634.866690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.123 3.877 4 H 0.083 0.917 5 C 0.504 3.496 6 O -0.599 6.599 7 N -0.709 5.709 8 C 0.084 3.916 9 C -0.158 4.158 10 C 0.083 3.917 11 N -0.604 5.604 12 C 0.517 3.483 13 O -0.588 6.588 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.114 4.114 17 C -0.536 4.536 18 H 0.031 0.969 19 C 0.029 3.971 20 N -0.902 5.902 21 Si 0.949 3.051 22 H -0.274 1.274 23 H -0.267 1.267 24 H -0.285 1.285 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.404 0.596 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.015 0.985 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.832 -20.174 -4.812 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.016 3.984 4 H 0.101 0.899 5 C 0.289 3.711 6 O -0.479 6.479 7 N -0.360 5.360 8 C -0.038 4.038 9 C -0.197 4.197 10 C -0.038 4.038 11 N -0.339 5.339 12 C 0.309 3.691 13 O -0.467 6.467 14 C 0.014 3.986 15 H 0.069 0.931 16 C -0.172 4.172 17 C -0.574 4.574 18 H 0.050 0.950 19 C -0.171 4.171 20 N -0.541 5.541 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.191 1.191 24 H -0.211 1.211 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.241 0.759 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.034 0.966 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.397 -19.340 -5.229 20.039 hybrid contribution 0.462 1.921 -0.376 2.012 sum 0.860 -17.419 -5.605 18.319 Atomic orbital electron populations 1.21836 0.94310 1.03376 1.01327 1.22243 0.97501 0.91194 1.05507 1.21541 0.93858 1.01008 0.82029 0.89902 1.21570 0.85407 0.80150 0.83940 1.90707 1.80850 1.36024 1.40334 1.46012 1.22468 1.34339 1.33226 1.22552 1.07016 0.89675 0.84576 1.22326 0.96914 1.01765 0.98744 1.21859 0.93975 0.92978 0.94947 1.48068 1.57812 1.12793 1.15242 1.21978 0.78390 0.80318 0.88451 1.90529 1.41064 1.53106 1.62011 1.18814 0.95696 0.96189 0.87894 0.93127 1.21519 0.97160 0.97914 1.00648 1.21170 1.42181 0.93568 1.00504 0.95014 1.25456 0.94755 1.02024 0.94865 1.69906 1.43110 1.36627 1.04442 0.85697 0.78325 0.80883 0.77596 1.19964 1.19136 1.21078 0.89008 0.93876 0.93579 0.88403 0.86451 0.75935 0.86841 0.85208 0.85227 0.93911 0.89355 0.86893 0.92877 0.90568 0.96568 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.65 71.98 0.69 -2.18 16 2 C -0.13 -2.39 4.00 30.59 0.12 -2.27 16 3 C 0.12 3.98 2.57 44.42 0.11 4.10 16 4 H 0.08 3.40 6.66 -2.38 -0.02 3.38 16 5 C 0.50 17.40 6.82 87.94 0.60 18.00 16 6 O -0.60 -27.54 17.95 -3.03 -0.05 -27.59 16 7 N -0.71 -16.03 5.24 -462.54 -2.42 -18.46 16 8 C 0.08 1.07 6.26 86.35 0.54 1.62 16 9 C -0.16 -2.85 5.91 30.27 0.18 -2.67 16 10 C 0.08 2.00 5.23 86.12 0.45 2.45 16 11 N -0.60 -21.26 2.59 -803.53 -2.08 -23.34 16 12 C 0.52 25.17 6.70 87.66 0.59 25.76 16 13 O -0.59 -34.29 15.38 -3.03 -0.05 -34.33 16 14 C 0.04 1.79 1.77 -12.29 -0.02 1.76 16 15 H 0.05 2.52 6.38 -2.39 -0.02 2.51 16 16 C -0.11 -5.31 8.63 71.98 0.62 -4.68 16 17 C -0.54 -32.12 8.32 25.60 0.21 -31.91 16 18 H 0.03 2.08 7.13 -2.91 -0.02 2.06 16 19 C 0.03 1.66 5.30 84.65 0.45 2.11 16 20 N -0.90 -49.92 11.38 21.44 0.24 -49.67 16 21 Si 0.95 45.89 29.54 68.60 2.03 47.92 16 22 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.44 6.97 -2.39 -0.02 1.42 16 29 H 0.12 1.54 4.00 -2.39 -0.01 1.53 16 30 H 0.40 8.14 8.93 -92.71 -0.83 7.31 16 31 H 0.11 1.06 3.67 -2.39 -0.01 1.05 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.11 8.04 -2.39 -0.02 1.09 16 35 H 0.09 2.51 4.90 -2.39 -0.01 2.50 16 36 H 0.11 1.72 6.14 -2.39 -0.01 1.71 16 37 H 0.05 1.97 7.71 -2.39 -0.02 1.95 16 38 H 0.08 3.77 6.24 -2.39 -0.01 3.75 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -83.79 308.49 2.46 -81.33 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.24 Total: 12.07 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 4.55 Total: 12.07 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -4.26 Total: -91.47 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.10 Total: -61.92 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.79 2.46 -81.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886502295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.922 kcal (2) G-P(sol) polarization free energy of solvation -83.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds