Wall clock time and date at job start Mon Mar 30 2020 01:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47102 * 2 1 4 4 H 1.08997 * 109.72702 * 331.99582 * 3 2 1 5 5 C 1.51331 * 109.59986 * 211.59914 * 3 2 1 6 6 O 1.21286 * 120.34836 * 128.50294 * 5 3 2 7 7 N 1.34250 * 119.30163 * 308.52145 * 5 3 2 8 8 C 1.46695 * 120.37098 * 357.12241 * 7 5 3 9 9 C 1.53032 * 109.06929 * 288.72455 * 8 7 5 10 10 C 1.52454 * 110.17400 * 88.67916 * 9 8 7 11 11 N 1.46060 * 111.51537 * 297.33318 * 10 9 8 12 12 C 1.34779 * 119.81060 * 242.96327 * 11 10 9 13 13 O 1.21286 * 119.99620 * 186.05539 * 12 11 10 14 14 C 1.50700 * 120.00167 * 6.05272 * 12 11 10 15 15 H 1.09003 * 109.46710 * 307.48489 * 14 12 11 16 16 C 1.53001 * 109.47204 * 67.47842 * 14 12 11 17 17 C 1.50701 * 109.47068 * 187.48253 * 14 12 11 18 18 H 1.07997 * 119.99752 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99588 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99539 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00307 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46898 * 90.00007 * 21 19 17 23 23 H 1.48500 * 109.47075 * 209.99863 * 21 19 17 24 24 H 1.48493 * 109.47047 * 330.00094 * 21 19 17 25 25 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47046 * 299.99659 * 1 2 3 27 27 H 1.09000 * 109.47076 * 59.99393 * 1 2 3 28 28 H 1.09006 * 109.47050 * 240.00349 * 2 1 3 29 29 H 1.08991 * 109.47199 * 120.00331 * 2 1 3 30 30 H 0.97002 * 119.81022 * 177.09682 * 7 5 3 31 31 H 1.08999 * 109.53737 * 168.84569 * 8 7 5 32 32 H 1.08998 * 109.53814 * 48.59826 * 8 7 5 33 33 H 1.09003 * 109.35294 * 328.46173 * 9 8 7 34 34 H 1.09005 * 109.23817 * 208.82318 * 9 8 7 35 35 H 1.08998 * 109.07017 * 176.80611 * 10 9 8 36 36 H 1.09002 * 109.01100 * 57.82415 * 10 9 8 37 37 H 1.08998 * 109.47006 * 54.87544 * 16 14 12 38 38 H 1.08990 * 109.47234 * 174.87790 * 16 14 12 39 39 H 1.09005 * 109.46794 * 294.88209 * 16 14 12 40 40 H 0.97000 * 119.99919 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3086 2.0914 -0.4817 5 6 3.3541 1.5164 -0.7470 6 8 3.5106 2.3302 -1.6326 7 7 4.3445 0.6714 -0.4193 8 6 4.1782 -0.2706 0.6928 9 6 4.2023 0.5042 2.0123 10 6 2.7956 0.9646 2.3774 11 7 2.2583 1.8871 1.3806 12 6 1.9618 3.1542 1.7312 13 8 1.4142 3.8906 0.9381 14 6 2.3105 3.6561 3.1088 15 1 1.9094 2.9723 3.8569 16 6 3.8317 3.7344 3.2531 17 6 1.7156 5.0261 3.3098 18 1 1.1427 5.4873 2.5190 19 6 1.9028 5.6905 4.5033 20 7 1.3841 6.8862 4.6786 21 14 2.8932 4.8923 5.8713 22 1 4.3242 5.2621 5.7269 23 1 2.3903 5.3641 7.1865 24 1 2.7525 3.4164 5.7880 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.1746 0.6837 -0.9210 31 1 4.9918 -0.9958 0.6809 32 1 3.2247 -0.7890 0.5919 33 1 4.8516 1.3736 1.9088 34 1 4.5871 -0.1420 2.8013 35 1 2.8245 1.4640 3.3458 36 1 2.1434 0.0939 2.4452 37 1 4.2419 4.3456 2.4492 38 1 4.0829 4.1823 4.2144 39 1 4.2540 2.7310 3.1982 40 1 1.5154 7.3535 5.5184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886502296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:16 Heat of formation + Delta-G solvation = -47.297375 kcal Electronic energy + Delta-G solvation = -22378.229492 eV Core-core repulsion = 19194.048934 eV Total energy + Delta-G solvation = -3184.180559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95247 -38.63404 -36.85642 -34.70606 -34.24657 -33.10961 -31.11095 -31.05345 -27.31030 -25.90310 -25.15408 -23.39987 -22.95137 -20.71921 -20.13907 -18.73844 -17.27998 -17.14156 -16.73192 -15.81892 -15.66158 -14.90429 -14.81553 -14.25816 -14.03371 -13.81596 -13.70434 -13.42489 -13.20492 -12.70261 -12.62615 -12.34573 -12.10710 -11.79504 -11.69928 -11.54193 -11.24987 -11.15469 -11.00340 -10.60210 -10.52930 -10.32684 -9.94301 -9.64469 -9.15572 -9.04432 -8.73251 -8.59098 -8.30528 -6.06070 -4.06498 2.50715 3.20411 3.22670 3.25671 3.33870 3.48569 3.52117 4.35315 4.40801 4.61307 4.65896 4.73995 4.89480 5.12273 5.17462 5.22039 5.26873 5.33094 5.47738 5.58975 5.61816 5.70179 5.81162 5.85079 5.93015 6.00668 6.16195 6.18802 6.29542 6.40047 6.62117 6.79855 6.85144 7.12286 7.19731 7.49487 7.87636 8.26886 8.51968 8.98244 9.13897 9.51949 11.06943 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.006694 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.949451 B = 4181.882182 C = 4439.590085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.127 3.873 4 H 0.126 0.874 5 C 0.513 3.487 6 O -0.535 6.535 7 N -0.727 5.727 8 C 0.084 3.916 9 C -0.166 4.166 10 C 0.097 3.903 11 N -0.616 5.616 12 C 0.529 3.471 13 O -0.515 6.515 14 C 0.001 3.999 15 H 0.051 0.949 16 C -0.149 4.149 17 C -0.507 4.507 18 H 0.093 0.907 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.884 3.116 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -21.060 -3.935 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.020 3.980 4 H 0.144 0.856 5 C 0.297 3.703 6 O -0.409 6.409 7 N -0.380 5.380 8 C -0.040 4.040 9 C -0.205 4.205 10 C -0.026 4.026 11 N -0.354 5.354 12 C 0.319 3.681 13 O -0.387 6.387 14 C -0.021 4.021 15 H 0.068 0.932 16 C -0.207 4.207 17 C -0.545 4.545 18 H 0.111 0.889 19 C -0.131 4.131 20 N -0.532 5.532 21 Si 0.715 3.285 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.231 0.769 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.981 -20.011 -4.611 21.131 hybrid contribution 1.152 -0.369 0.750 1.423 sum 6.133 -20.380 -3.861 21.630 Atomic orbital electron populations 1.21802 0.94385 1.01722 1.02957 1.22255 0.97583 0.94946 1.03178 1.21455 0.94270 0.97777 0.84544 0.85611 1.21348 0.86568 0.79485 0.82897 1.90755 1.82114 1.35917 1.32130 1.45999 1.18149 1.38739 1.35158 1.22265 1.04414 0.91609 0.85722 1.22482 0.98603 1.01661 0.97786 1.21525 0.93447 0.94217 0.93408 1.48098 1.66693 1.12607 1.07995 1.21495 0.76303 0.79177 0.91083 1.90614 1.39989 1.54826 1.53245 1.19292 0.93934 0.99460 0.89378 0.93165 1.22247 0.97167 0.99484 1.01766 1.20945 1.33346 0.98235 1.01958 0.88887 1.24986 0.95521 0.94704 0.97912 1.69884 1.44989 1.12757 1.25572 0.86913 0.80119 0.79992 0.81511 1.20537 1.22246 1.19233 0.92396 0.91909 0.92287 0.90780 0.89011 0.76860 0.89816 0.88448 0.90163 0.89460 0.88085 0.91196 0.92598 0.93031 0.94281 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.73 37.16 0.36 -1.18 16 2 C -0.14 -1.44 3.93 -26.73 -0.10 -1.55 16 3 C 0.13 1.93 2.48 -68.68 -0.17 1.76 16 4 H 0.13 2.31 6.79 -51.93 -0.35 1.95 16 5 C 0.51 8.19 6.85 -10.91 -0.07 8.11 16 6 O -0.53 -11.11 17.95 5.55 0.10 -11.01 16 7 N -0.73 -8.13 5.29 -60.04 -0.32 -8.45 16 8 C 0.08 0.64 6.34 -3.92 -0.02 0.62 16 9 C -0.17 -1.54 5.46 -26.99 -0.15 -1.69 16 10 C 0.10 1.16 4.71 -4.56 -0.02 1.14 16 11 N -0.62 -10.12 2.59 -167.62 -0.43 -10.55 16 12 C 0.53 11.79 6.94 -10.98 -0.08 11.72 16 13 O -0.51 -13.77 14.93 5.55 0.08 -13.69 16 14 C 0.00 0.02 1.37 -92.92 -0.13 -0.11 16 15 H 0.05 1.10 6.07 -51.93 -0.32 0.78 16 16 C -0.15 -3.10 8.34 37.16 0.31 -2.79 16 17 C -0.51 -14.73 8.95 -34.44 -0.31 -15.04 16 18 H 0.09 3.10 7.02 -52.49 -0.37 2.74 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 20 N -0.89 -27.71 13.96 55.43 0.77 -26.94 16 21 Si 0.88 21.02 24.41 -169.99 -4.15 16.87 16 22 H -0.28 -6.45 6.83 56.52 0.39 -6.07 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -5.74 6.53 56.52 0.37 -5.37 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 29 H 0.09 0.75 3.43 -51.93 -0.18 0.57 16 30 H 0.40 3.94 8.93 -40.82 -0.36 3.57 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.66 3.65 -51.93 -0.19 0.47 16 33 H 0.08 0.94 6.88 -51.93 -0.36 0.58 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.34 4.69 -51.93 -0.24 1.10 16 36 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.11 3.22 -51.93 -0.17 0.95 16 39 H 0.04 0.64 4.56 -51.93 -0.24 0.40 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 296.54 15.07 4.47 4.47 Total: -1.00 -36.82 296.54 -5.18 -42.00 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.22 Total: 4.36 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.48 Total: 2.94 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.02 Total: -45.94 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.18 Total: -24.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.15 Total: 16.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.82 -5.18 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886502296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.301 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds