Wall clock time and date at job start Mon Mar 30 2020 01:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47102 * 2 1 4 4 H 1.08997 * 109.72702 * 331.99582 * 3 2 1 5 5 C 1.51331 * 109.59986 * 211.59914 * 3 2 1 6 6 O 1.21286 * 120.34836 * 128.50294 * 5 3 2 7 7 N 1.34250 * 119.30163 * 308.52145 * 5 3 2 8 8 C 1.46695 * 120.37098 * 357.12241 * 7 5 3 9 9 C 1.53032 * 109.06929 * 288.72455 * 8 7 5 10 10 C 1.52454 * 110.17400 * 88.67916 * 9 8 7 11 11 N 1.46060 * 111.51537 * 297.33318 * 10 9 8 12 12 C 1.34779 * 119.81060 * 242.96327 * 11 10 9 13 13 O 1.21286 * 119.99620 * 186.05539 * 12 11 10 14 14 C 1.50700 * 120.00167 * 6.05272 * 12 11 10 15 15 H 1.09003 * 109.46710 * 307.48489 * 14 12 11 16 16 C 1.53001 * 109.47204 * 67.47842 * 14 12 11 17 17 C 1.50701 * 109.47068 * 187.48253 * 14 12 11 18 18 H 1.07997 * 119.99752 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99588 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99539 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00307 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46898 * 90.00007 * 21 19 17 23 23 H 1.48500 * 109.47075 * 209.99863 * 21 19 17 24 24 H 1.48493 * 109.47047 * 330.00094 * 21 19 17 25 25 H 1.09000 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47046 * 299.99659 * 1 2 3 27 27 H 1.09000 * 109.47076 * 59.99393 * 1 2 3 28 28 H 1.09006 * 109.47050 * 240.00349 * 2 1 3 29 29 H 1.08991 * 109.47199 * 120.00331 * 2 1 3 30 30 H 0.97002 * 119.81022 * 177.09682 * 7 5 3 31 31 H 1.08999 * 109.53737 * 168.84569 * 8 7 5 32 32 H 1.08998 * 109.53814 * 48.59826 * 8 7 5 33 33 H 1.09003 * 109.35294 * 328.46173 * 9 8 7 34 34 H 1.09005 * 109.23817 * 208.82318 * 9 8 7 35 35 H 1.08998 * 109.07017 * 176.80611 * 10 9 8 36 36 H 1.09002 * 109.01100 * 57.82415 * 10 9 8 37 37 H 1.08998 * 109.47006 * 54.87544 * 16 14 12 38 38 H 1.08990 * 109.47234 * 174.87790 * 16 14 12 39 39 H 1.09005 * 109.46794 * 294.88209 * 16 14 12 40 40 H 0.97000 * 119.99919 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3086 2.0914 -0.4817 5 6 3.3541 1.5164 -0.7470 6 8 3.5106 2.3302 -1.6326 7 7 4.3445 0.6714 -0.4193 8 6 4.1782 -0.2706 0.6928 9 6 4.2023 0.5042 2.0123 10 6 2.7956 0.9646 2.3774 11 7 2.2583 1.8871 1.3806 12 6 1.9618 3.1542 1.7312 13 8 1.4142 3.8906 0.9381 14 6 2.3105 3.6561 3.1088 15 1 1.9094 2.9723 3.8569 16 6 3.8317 3.7344 3.2531 17 6 1.7156 5.0261 3.3098 18 1 1.1427 5.4873 2.5190 19 6 1.9028 5.6905 4.5033 20 7 1.3841 6.8862 4.6786 21 14 2.8932 4.8923 5.8713 22 1 4.3242 5.2621 5.7269 23 1 2.3903 5.3641 7.1865 24 1 2.7525 3.4164 5.7880 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 5.1746 0.6837 -0.9210 31 1 4.9918 -0.9958 0.6809 32 1 3.2247 -0.7890 0.5919 33 1 4.8516 1.3736 1.9088 34 1 4.5871 -0.1420 2.8013 35 1 2.8245 1.4640 3.3458 36 1 2.1434 0.0939 2.4452 37 1 4.2419 4.3456 2.4492 38 1 4.0829 4.1823 4.2144 39 1 4.2540 2.7310 3.1982 40 1 1.5154 7.3535 5.5184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886502296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:15 Heat of formation + Delta-G solvation = -78.804506 kcal Electronic energy + Delta-G solvation = -22379.595744 eV Core-core repulsion = 19194.048934 eV Total energy + Delta-G solvation = -3185.546810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.18358 -40.17454 -38.16905 -36.08267 -35.75133 -34.52134 -32.99948 -32.11577 -28.45430 -27.25784 -26.78875 -24.70124 -24.27120 -21.78756 -21.31468 -20.11224 -18.89266 -18.33674 -18.23576 -17.50089 -16.99921 -16.59019 -16.05331 -15.55226 -15.26482 -15.12982 -14.93175 -14.66150 -14.48767 -14.34120 -13.77006 -13.60671 -13.44397 -13.17884 -12.93634 -12.83871 -12.65517 -12.41375 -12.17722 -12.10344 -12.04939 -11.50092 -11.44868 -11.23613 -11.05632 -10.78888 -10.47414 -10.04494 -9.64751 -8.28494 -6.37880 1.23388 1.31939 1.39359 1.51666 1.73636 2.18896 2.33596 2.34571 3.04302 3.36407 3.66661 3.87928 3.89292 3.96424 4.07972 4.29352 4.32849 4.46950 4.50336 4.52415 4.56421 4.67350 4.71501 4.78663 4.86258 4.92214 5.00093 5.04316 5.07841 5.33432 5.35504 5.43579 5.49591 5.60032 5.89772 6.13443 6.20907 6.46416 6.77010 7.14849 7.22147 7.36327 8.89749 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.006694 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.949451 B = 4181.882182 C = 4439.590085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.123 3.877 4 H 0.078 0.922 5 C 0.506 3.494 6 O -0.600 6.600 7 N -0.707 5.707 8 C 0.077 3.923 9 C -0.163 4.163 10 C 0.076 3.924 11 N -0.601 5.601 12 C 0.521 3.479 13 O -0.583 6.583 14 C 0.002 3.998 15 H 0.080 0.920 16 C -0.141 4.141 17 C -0.528 4.528 18 H 0.021 0.979 19 C 0.003 3.997 20 N -0.954 5.954 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.297 1.297 24 H -0.216 1.216 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.405 0.595 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.029 0.971 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.151 -26.914 -1.590 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.016 3.984 4 H 0.097 0.903 5 C 0.291 3.709 6 O -0.480 6.480 7 N -0.358 5.358 8 C -0.044 4.044 9 C -0.202 4.202 10 C -0.045 4.045 11 N -0.336 5.336 12 C 0.312 3.688 13 O -0.461 6.461 14 C -0.019 4.019 15 H 0.097 0.903 16 C -0.198 4.198 17 C -0.566 4.566 18 H 0.039 0.961 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.786 3.214 22 H -0.190 1.190 23 H -0.225 1.225 24 H -0.138 1.138 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.241 0.759 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.729 -26.001 -2.247 27.218 hybrid contribution 0.247 1.449 -0.067 1.471 sum 7.976 -24.552 -2.314 25.918 Atomic orbital electron populations 1.21818 0.94615 1.03275 1.01234 1.22304 0.97268 0.91211 1.05796 1.21507 0.93477 1.00208 0.83211 0.90348 1.21473 0.87592 0.79559 0.82269 1.90724 1.83193 1.38916 1.35122 1.45997 1.16916 1.37511 1.35417 1.22680 1.07355 0.91112 0.83299 1.22529 0.95784 1.01789 1.00098 1.22103 0.96312 0.94461 0.91599 1.47973 1.65059 1.11145 1.09452 1.21456 0.76054 0.80887 0.90439 1.90594 1.43303 1.57392 1.54815 1.19211 0.95511 0.96423 0.90790 0.90270 1.22140 0.94797 1.02195 1.00653 1.21113 1.33498 1.01423 1.00603 0.96070 1.26154 0.96738 0.95103 1.01319 1.70100 1.47249 1.15267 1.26791 0.85674 0.78103 0.81654 0.76000 1.18975 1.22465 1.13812 0.88986 0.93900 0.94024 0.88601 0.85556 0.75878 0.85184 0.86809 0.92546 0.84622 0.88676 0.86927 0.95144 0.93096 0.88957 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.73 71.98 0.70 -2.12 16 2 C -0.13 -2.19 3.93 30.60 0.12 -2.07 16 3 C 0.12 3.73 2.48 44.42 0.11 3.84 16 4 H 0.08 3.15 6.79 -2.39 -0.02 3.13 16 5 C 0.51 16.00 6.85 87.94 0.60 16.60 16 6 O -0.60 -26.22 17.95 -3.05 -0.05 -26.27 16 7 N -0.71 -13.43 5.29 -462.56 -2.45 -15.87 16 8 C 0.08 0.67 6.34 86.35 0.55 1.22 16 9 C -0.16 -1.93 5.46 30.42 0.17 -1.77 16 10 C 0.08 1.42 4.71 86.28 0.41 1.83 16 11 N -0.60 -19.05 2.59 -802.61 -2.08 -21.13 16 12 C 0.52 24.14 6.94 87.66 0.61 24.75 16 13 O -0.58 -34.31 14.93 -3.05 -0.05 -34.36 16 14 C 0.00 0.10 1.37 -12.29 -0.02 0.08 16 15 H 0.08 3.22 6.07 -2.39 -0.01 3.20 16 16 C -0.14 -5.54 8.34 71.98 0.60 -4.94 16 17 C -0.53 -32.57 8.95 25.60 0.23 -32.34 16 18 H 0.02 1.56 7.02 -2.91 -0.02 1.54 16 19 C 0.00 0.18 5.45 84.65 0.46 0.64 16 20 N -0.95 -62.46 13.96 21.45 0.30 -62.16 16 21 Si 0.96 42.28 24.41 68.60 1.67 43.96 16 22 H -0.26 -10.98 6.83 99.48 0.68 -10.30 16 23 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.22 -7.68 6.53 99.48 0.65 -7.03 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 28 H 0.10 1.30 7.69 -2.38 -0.02 1.28 16 29 H 0.13 1.25 3.43 -2.39 -0.01 1.24 16 30 H 0.40 6.76 8.93 -92.71 -0.83 5.93 16 31 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.11 0.68 3.65 -2.39 -0.01 0.67 16 33 H 0.06 1.01 6.88 -2.39 -0.02 0.99 16 34 H 0.14 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.10 1.96 4.69 -2.39 -0.01 1.95 16 36 H 0.11 1.24 6.34 -2.39 -0.02 1.22 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 2.01 3.22 -2.39 -0.01 2.01 16 39 H 0.09 2.61 4.56 -2.38 -0.01 2.60 16 40 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -95.96 296.54 2.06 -93.90 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.17 Total: 16.21 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.54 Total: 5.73 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -4.22 Total: -99.16 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -0.10 Total: -60.63 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.96 kcal Total: -95.96 2.06 -93.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886502296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.098 kcal (2) G-P(sol) polarization free energy of solvation -95.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds