Wall clock time and date at job start Mon Mar 30 2020 01:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.52992 * 109.46961 * 299.99486 * 4 3 2 7 7 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 8 8 N 1.29943 * 126.28949 * 0.02562 * 7 4 3 9 9 O 1.21296 * 110.25208 * 179.97438 * 8 7 4 10 10 C 1.33648 * 109.81275 * 0.02562 * 9 8 7 11 11 C 1.50695 * 126.55345 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46941 * 269.97324 * 11 10 9 13 13 C 1.53000 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47454 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00315 * 179.97438 * 14 13 12 17 17 N 1.31505 * 119.99826 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47161 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47277 * 119.99759 * 18 16 14 21 21 H 1.48499 * 109.47098 * 239.99840 * 18 16 14 22 22 N 1.31133 * 106.89245 * 359.76788 * 10 9 8 23 23 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 24 24 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 26 26 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 27 27 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.47747 * 300.00196 * 6 4 3 33 33 H 1.09002 * 109.47103 * 60.00608 * 6 4 3 34 34 H 1.08998 * 109.47490 * 29.97259 * 11 10 9 35 35 H 1.08999 * 109.47388 * 149.97383 * 11 10 9 36 36 H 1.09003 * 109.46974 * 299.99771 * 12 11 10 37 37 H 1.08999 * 109.47031 * 59.99841 * 12 11 10 38 38 H 1.09003 * 109.46594 * 299.99608 * 13 12 11 39 39 H 1.08995 * 109.47310 * 59.99032 * 13 12 11 40 40 H 0.97001 * 120.00190 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4253 1.2483 7 6 4.1483 2.5615 -0.0013 8 7 3.5042 3.6900 -0.0008 9 8 4.2844 4.6188 -0.0011 10 6 5.5385 4.1568 -0.0023 11 6 6.7991 4.9825 -0.0024 12 6 7.2251 5.2626 -1.4450 13 6 8.5054 6.1004 -1.4452 14 6 8.9246 6.3768 -2.8660 15 1 8.3370 5.9929 -3.6868 16 6 10.0584 7.1198 -3.1181 17 7 10.7737 7.5877 -2.1187 18 14 10.5785 7.4618 -4.8793 19 1 9.6122 6.8287 -5.8126 20 1 10.6039 8.9282 -5.1121 21 1 11.9329 6.8998 -5.1135 22 7 5.4624 2.8477 0.0023 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.5431 -0.5702 -1.2501 29 1 5.0730 0.3400 -1.2508 30 1 3.6644 0.9667 -2.1400 31 1 5.0739 0.3396 1.2481 32 1 3.6661 0.9660 2.1385 33 1 3.5440 -0.5705 1.2483 34 1 6.6157 5.9259 0.5119 35 1 7.5909 4.4369 0.5109 36 1 7.4087 4.3192 -1.9593 37 1 6.4333 5.8082 -1.9582 38 1 8.3222 7.0438 -0.9308 39 1 9.2969 5.5545 -0.9320 40 1 11.5711 8.1107 -2.2960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896594069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:26 Heat of formation + Delta-G solvation = -7.090264 kcal Electronic energy + Delta-G solvation = -20183.697487 eV Core-core repulsion = 17001.260439 eV Total energy + Delta-G solvation = -3182.437048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.43180 -38.93518 -36.61396 -35.55077 -34.08831 -32.68544 -31.14792 -28.02476 -27.56318 -27.44822 -25.95293 -24.16232 -24.07603 -22.17840 -20.47251 -19.61098 -17.84972 -17.37005 -16.48140 -16.29356 -16.11468 -15.73036 -14.69234 -14.56649 -14.41168 -13.93804 -13.90967 -13.50549 -12.64018 -12.58902 -12.56150 -12.12933 -12.01215 -12.00524 -11.60778 -11.53816 -11.48773 -11.16507 -11.13147 -10.89469 -10.82823 -10.69705 -10.57131 -9.97700 -9.85370 -9.84769 -9.40220 -9.11842 -8.39440 -6.04465 -4.06804 1.30932 2.35812 3.03187 3.14478 3.29664 3.37488 3.41736 3.81604 4.13617 4.43678 4.58611 4.67331 4.76770 5.02137 5.03139 5.17981 5.29275 5.32068 5.33859 5.34254 5.50121 5.60739 5.61944 5.63833 5.69738 5.72442 5.88559 6.04730 6.08111 6.10351 6.19181 6.48610 6.62541 6.79804 6.93894 7.59731 7.71110 7.94219 8.30869 8.35809 8.99656 9.57765 11.06882 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.003090 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.518835 B = 9059.546296 C = 9271.515135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.077 3.923 4 C 0.034 3.966 5 C -0.134 4.134 6 C -0.133 4.133 7 C 0.178 3.822 8 N -0.396 5.396 9 O 0.071 5.929 10 C 0.206 3.794 11 C -0.033 4.033 12 C -0.106 4.106 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.483 5.483 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.134 -13.097 6.640 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.001 4.001 4 C 0.032 3.968 5 C -0.192 4.192 6 C -0.191 4.191 7 C -0.096 4.096 8 N -0.106 5.106 9 O 0.014 5.986 10 C -0.013 4.013 11 C -0.072 4.072 12 C -0.145 4.145 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.216 5.216 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.586 -13.511 6.690 23.164 hybrid contribution 0.223 0.749 -0.963 1.240 sum -17.363 -12.761 5.728 22.297 Atomic orbital electron populations 1.22741 0.80763 1.02761 1.00144 1.87811 1.19757 1.27300 1.95479 1.22374 0.91798 0.84642 1.01250 1.18778 0.92553 0.86107 0.99350 1.21794 1.02446 1.00284 0.94702 1.21779 1.02357 1.00303 0.94644 1.25476 0.86994 0.96276 1.00836 1.74556 1.17130 0.96535 1.22393 1.85277 1.15263 1.32063 1.65961 1.29379 0.89401 0.89612 0.92915 1.20659 0.86212 0.97656 1.02679 1.21736 1.00900 1.01326 0.90525 1.19107 0.90299 0.94498 0.97538 1.21233 1.09386 1.32962 0.92372 0.92589 1.25005 0.96498 0.95788 0.97102 1.69958 1.16685 1.36133 1.30597 0.86534 0.78511 0.77979 0.84988 1.19739 1.20981 1.20976 1.71849 1.16917 1.11479 1.21359 0.93993 0.89442 0.94052 0.92655 0.92586 0.90491 0.91157 0.92665 0.91226 0.92813 0.90486 0.88265 0.87404 0.92334 0.92571 0.96081 0.96062 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -3.97 9.35 -35.23 -0.33 -4.29 16 3 C 0.08 0.86 4.31 37.16 0.16 1.02 16 4 C 0.03 0.42 0.82 -155.66 -0.13 0.29 16 5 C -0.13 -1.55 8.31 37.16 0.31 -1.24 16 6 C -0.13 -1.45 8.31 37.15 0.31 -1.14 16 7 C 0.18 2.66 6.40 -156.37 -1.00 1.66 16 8 N -0.40 -6.25 11.47 30.90 0.35 -5.89 16 9 O 0.07 1.13 11.31 18.09 0.20 1.33 16 10 C 0.21 3.26 7.77 -13.06 -0.10 3.16 16 11 C -0.03 -0.51 5.84 -27.88 -0.16 -0.67 16 12 C -0.11 -2.03 5.14 -26.73 -0.14 -2.17 16 13 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 14 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 N -0.48 -7.83 11.55 -9.87 -0.11 -7.94 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.78 7.68 -51.93 -0.40 0.38 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -30.29 338.82 -5.93 -36.22 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -6.68 Total: -4.93 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.19 Total: -10.47 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.98 Total: -39.29 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -0.13 Total: -2.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.29 -5.93 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896594069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.130 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds