Wall clock time and date at job start Mon Mar 30 2020 01:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.52992 * 109.46961 * 299.99486 * 4 3 2 7 7 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 8 8 N 1.29943 * 126.28949 * 0.02562 * 7 4 3 9 9 O 1.21296 * 110.25208 * 179.97438 * 8 7 4 10 10 C 1.33648 * 109.81275 * 0.02562 * 9 8 7 11 11 C 1.50695 * 126.55345 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46941 * 269.97324 * 11 10 9 13 13 C 1.53000 * 109.47306 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47454 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99698 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00315 * 179.97438 * 14 13 12 17 17 N 1.31505 * 119.99826 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47161 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47277 * 119.99759 * 18 16 14 21 21 H 1.48499 * 109.47098 * 239.99840 * 18 16 14 22 22 N 1.31133 * 106.89245 * 359.76788 * 10 9 8 23 23 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 24 24 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 26 26 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 27 27 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.47747 * 300.00196 * 6 4 3 33 33 H 1.09002 * 109.47103 * 60.00608 * 6 4 3 34 34 H 1.08998 * 109.47490 * 29.97259 * 11 10 9 35 35 H 1.08999 * 109.47388 * 149.97383 * 11 10 9 36 36 H 1.09003 * 109.46974 * 299.99771 * 12 11 10 37 37 H 1.08999 * 109.47031 * 59.99841 * 12 11 10 38 38 H 1.09003 * 109.46594 * 299.99608 * 13 12 11 39 39 H 1.08995 * 109.47310 * 59.99032 * 13 12 11 40 40 H 0.97001 * 120.00190 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4253 1.2483 7 6 4.1483 2.5615 -0.0013 8 7 3.5042 3.6900 -0.0008 9 8 4.2844 4.6188 -0.0011 10 6 5.5385 4.1568 -0.0023 11 6 6.7991 4.9825 -0.0024 12 6 7.2251 5.2626 -1.4450 13 6 8.5054 6.1004 -1.4452 14 6 8.9246 6.3768 -2.8660 15 1 8.3370 5.9929 -3.6868 16 6 10.0584 7.1198 -3.1181 17 7 10.7737 7.5877 -2.1187 18 14 10.5785 7.4618 -4.8793 19 1 9.6122 6.8287 -5.8126 20 1 10.6039 8.9282 -5.1121 21 1 11.9329 6.8998 -5.1135 22 7 5.4624 2.8477 0.0023 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.5431 -0.5702 -1.2501 29 1 5.0730 0.3400 -1.2508 30 1 3.6644 0.9667 -2.1400 31 1 5.0739 0.3396 1.2481 32 1 3.6661 0.9660 2.1385 33 1 3.5440 -0.5705 1.2483 34 1 6.6157 5.9259 0.5119 35 1 7.5909 4.4369 0.5109 36 1 7.4087 4.3192 -1.9593 37 1 6.4333 5.8082 -1.9582 38 1 8.3222 7.0438 -0.9308 39 1 9.2969 5.5545 -0.9320 40 1 11.5711 8.1107 -2.2960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896594069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:25 Heat of formation + Delta-G solvation = -26.145500 kcal Electronic energy + Delta-G solvation = -20184.523784 eV Core-core repulsion = 17001.260439 eV Total energy + Delta-G solvation = -3183.263345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.65371 -39.79135 -37.61142 -36.99425 -35.48201 -34.38597 -32.64905 -29.56944 -28.44336 -28.33886 -26.82704 -25.88660 -25.18943 -23.53128 -22.13992 -20.67820 -19.09348 -18.63860 -18.25369 -17.32193 -16.88121 -16.72892 -16.46349 -16.03064 -15.49508 -15.21253 -14.77354 -14.41982 -14.31731 -14.02556 -13.79293 -13.45836 -13.11695 -12.87996 -12.82197 -12.80882 -12.65078 -12.56626 -12.46699 -12.33193 -12.23730 -12.05047 -11.72308 -11.55329 -11.48019 -11.25676 -10.81317 -10.72175 -10.52249 -8.18061 -6.27321 0.07190 1.15163 1.41447 1.42848 1.54834 1.79187 2.21432 2.43377 2.81525 3.06283 3.16250 3.68359 3.75787 3.79477 4.07399 4.21252 4.22139 4.32318 4.40029 4.47086 4.54906 4.55664 4.73049 4.73472 4.78960 4.80154 4.82538 4.84496 4.96332 5.03105 5.03834 5.19632 5.20600 5.24882 5.54522 5.76457 5.88260 6.07179 6.27469 6.89075 7.08670 7.41438 8.93582 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.003090 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.518835 B = 9059.546296 C = 9271.515135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.085 3.915 4 C 0.028 3.972 5 C -0.129 4.129 6 C -0.126 4.126 7 C 0.179 3.821 8 N -0.405 5.405 9 O 0.066 5.934 10 C 0.207 3.793 11 C -0.022 4.022 12 C -0.091 4.091 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.279 1.279 22 N -0.496 5.496 23 H 0.046 0.954 24 H 0.106 0.894 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -13.956 6.332 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.008 3.992 4 C 0.026 3.974 5 C -0.187 4.187 6 C -0.184 4.184 7 C -0.095 4.095 8 N -0.116 5.116 9 O 0.011 5.989 10 C -0.013 4.013 11 C -0.061 4.061 12 C -0.130 4.130 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.205 1.205 22 N -0.230 5.230 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.581 -14.368 6.382 24.340 hybrid contribution 0.477 0.976 -0.848 1.378 sum -18.104 -13.392 5.535 23.189 Atomic orbital electron populations 1.22961 0.79170 1.04238 1.00711 1.87788 1.21465 1.26533 1.95535 1.22202 0.91051 0.85159 1.00837 1.18990 0.93312 0.84830 1.00234 1.21756 1.01954 1.00900 0.94074 1.21737 1.01989 1.00812 0.93890 1.25988 0.86613 0.97184 0.99684 1.74555 1.17249 0.96774 1.23041 1.85266 1.15262 1.32256 1.66125 1.29312 0.89427 0.89597 0.92948 1.20490 0.86399 0.98924 1.00256 1.21427 0.98501 0.99887 0.93189 1.18991 0.92077 0.94422 0.95664 1.21693 1.09603 1.32845 0.93927 0.92648 1.25864 0.96650 0.95672 1.01310 1.70064 1.17228 1.36907 1.32741 0.85496 0.78182 0.77970 0.79993 1.19000 1.20369 1.20469 1.71862 1.17709 1.11723 1.21673 0.93574 0.87559 0.93357 0.92826 0.93255 0.88931 0.91953 0.93356 0.91832 0.92860 0.89047 0.86203 0.86468 0.93079 0.92506 0.97414 0.97796 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.39 -7.38 9.35 -148.98 -1.39 -8.77 16 3 C 0.08 1.79 4.31 71.98 0.31 2.10 16 4 C 0.03 0.66 0.82 -52.93 -0.04 0.61 16 5 C -0.13 -2.82 8.31 71.98 0.60 -2.22 16 6 C -0.13 -2.57 8.31 71.98 0.60 -1.97 16 7 C 0.18 5.20 6.40 138.47 0.89 6.09 16 8 N -0.41 -12.44 11.47 -60.33 -0.69 -13.13 16 9 O 0.07 2.03 11.31 74.79 0.85 2.88 16 10 C 0.21 6.32 7.77 88.38 0.69 7.01 16 11 C -0.02 -0.65 5.84 29.85 0.17 -0.47 16 12 C -0.09 -3.46 5.14 30.60 0.16 -3.31 16 13 C 0.03 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 15 H 0.06 2.99 7.74 -2.91 -0.02 2.96 16 16 C 0.00 0.17 5.46 84.66 0.46 0.64 16 17 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 18 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 N -0.50 -15.65 11.55 -303.21 -3.50 -19.15 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.72 7.68 -2.39 -0.02 1.70 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.59 7.68 -2.39 -0.02 1.57 16 34 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -63.58 338.82 4.03 -59.55 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.00 Total: 5.75 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.46 Total: -18.28 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -3.91 Total: -86.80 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.55 Total: -5.89 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -63.58 4.03 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896594069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.403 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds