Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47339 * 305.00140 * 3 2 1 5 5 C 1.50700 * 109.47041 * 185.00001 * 3 2 1 6 6 H 1.08011 * 120.00020 * 240.00033 * 5 3 2 7 7 C 1.37873 * 120.00560 * 60.00197 * 5 3 2 8 8 N 1.31519 * 119.99275 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00776 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47292 * 89.99517 * 9 7 5 11 11 H 1.48500 * 109.47430 * 210.00153 * 9 7 5 12 12 H 1.48501 * 109.46983 * 330.00099 * 9 7 5 13 13 N 1.46503 * 109.47111 * 65.00168 * 3 2 1 14 14 C 1.34774 * 119.99667 * 275.00050 * 13 3 2 15 15 O 1.21284 * 120.00320 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.70096 * 300.51209 * 16 14 13 18 18 C 1.53347 * 109.67170 * 180.02562 * 16 14 13 19 19 C 1.52915 * 108.67477 * 172.73729 * 18 16 14 20 20 N 1.45757 * 110.49061 * 50.74811 * 19 18 16 21 21 C 1.33355 * 124.10452 * 340.93061 * 20 19 18 22 22 O 1.21285 * 118.24329 * 182.20138 * 21 20 19 23 23 C 1.50173 * 123.50960 * 2.21535 * 21 20 19 24 24 H 1.09000 * 109.47644 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47163 * 299.99976 * 1 2 3 26 26 H 1.09003 * 109.47168 * 59.99704 * 1 2 3 27 27 H 1.09005 * 109.46754 * 239.99697 * 2 1 3 28 28 H 1.09003 * 109.47168 * 120.00296 * 2 1 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00061 * 94.99815 * 13 3 2 31 31 H 1.08997 * 109.46706 * 299.48851 * 17 16 14 32 32 H 1.09001 * 109.46287 * 59.48543 * 17 16 14 33 33 H 1.08993 * 109.46838 * 179.48588 * 17 16 14 34 34 H 1.09004 * 109.59985 * 292.48660 * 18 16 14 35 35 H 1.09001 * 109.60890 * 52.97677 * 18 16 14 36 36 H 1.09003 * 109.30355 * 171.06195 * 19 18 16 37 37 H 1.09007 * 109.30111 * 290.43491 * 19 18 16 38 38 H 0.97000 * 117.94459 * 160.92305 * 20 19 18 39 39 H 1.08989 * 109.40611 * 222.29012 * 23 21 20 40 40 H 1.08999 * 109.39741 * 102.54572 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4441 -0.1238 6 1 4.1473 1.8887 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7602 11 1 6.3830 0.9221 -2.8173 12 1 6.5570 2.0735 -0.6902 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3392 2.6327 0.4341 16 6 0.0368 3.3386 2.6545 17 6 0.0914 2.3297 3.8035 18 6 -1.3854 3.8974 2.5260 19 6 -1.8343 4.4130 3.8938 20 7 -0.8287 5.3046 4.4582 21 6 0.4437 5.3434 4.0609 22 8 1.2006 6.0992 4.6325 23 6 0.9893 4.5015 2.9435 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0620 -2.9495 30 1 2.2720 2.1230 1.9978 31 1 -0.6017 1.5128 3.6027 32 1 1.1033 1.9343 3.8919 33 1 -0.1885 2.8234 4.7340 34 1 -1.3930 4.7159 1.8062 35 1 -2.0598 3.1084 2.1933 36 1 -2.7744 4.9537 3.7843 37 1 -1.9845 3.5680 4.5659 38 1 -1.1023 5.9075 5.1671 39 1 1.9647 4.1081 3.2295 40 1 1.0956 5.1135 2.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897893557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = -91.726265 kcal Electronic energy + Delta-G solvation = -21703.468010 eV Core-core repulsion = 18517.360870 eV Total energy + Delta-G solvation = -3186.107140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89468 -39.01256 -36.67053 -35.04795 -33.90698 -32.29897 -30.85244 -29.67253 -27.97284 -26.93589 -24.60440 -23.39489 -22.49719 -20.24172 -19.41269 -18.40218 -17.69109 -16.69660 -16.35858 -15.78329 -15.41535 -15.16957 -14.83637 -14.70433 -14.23532 -13.63240 -13.32641 -13.23437 -12.72481 -12.70903 -12.15229 -12.07163 -11.68787 -11.52040 -11.46745 -11.25547 -11.05439 -10.94475 -10.83290 -10.81675 -10.34832 -10.19902 -10.04011 -9.65939 -9.21279 -9.06961 -8.88858 -8.51666 -7.85773 -6.14106 -4.23545 2.59127 3.17555 3.23641 3.29711 3.31352 3.33673 3.92219 4.33788 4.46682 4.58664 4.71813 4.78915 5.06955 5.14456 5.18030 5.29993 5.41791 5.58304 5.62994 5.78331 5.80093 5.96217 6.06297 6.21029 6.35600 6.42100 6.62200 6.64644 7.00309 7.15993 7.20052 7.33183 7.41568 7.59479 7.70364 7.87552 8.13044 8.15890 8.62931 8.75270 9.08243 9.44070 10.91103 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.005430 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.702286 B = 5155.731304 C = 5932.311633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.703 5.703 14 C 0.513 3.487 15 O -0.545 6.545 16 C -0.085 4.085 17 C -0.144 4.144 18 C -0.111 4.111 19 C 0.109 3.891 20 N -0.721 5.721 21 C 0.528 3.472 22 O -0.560 6.560 23 C -0.124 4.124 24 H 0.022 0.978 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.107 0.893 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 4.287 11.625 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.424 6.424 16 C -0.089 4.089 17 C -0.201 4.201 18 C -0.149 4.149 19 C -0.016 4.016 20 N -0.373 5.373 21 C 0.315 3.685 22 O -0.439 6.439 23 C -0.164 4.164 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.126 0.874 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.404 4.374 10.835 14.999 hybrid contribution 1.121 0.085 0.436 1.206 sum -8.283 4.459 11.272 14.681 Atomic orbital electron populations 1.21836 0.98389 0.97995 1.01174 1.21931 0.92575 0.99830 1.02291 1.18793 0.94217 0.89173 0.80970 0.93298 1.21234 0.90722 1.39034 1.06291 0.92089 1.24873 0.98569 0.94790 0.95366 1.69894 1.35117 1.37583 1.09377 0.86470 0.84921 0.78479 0.77388 1.20559 1.21087 1.19828 1.46507 1.14486 1.55565 1.18486 1.19963 0.82924 0.79325 0.88139 1.90674 1.51477 1.60045 1.40156 1.20953 0.96357 0.95674 0.95913 1.21942 1.03297 0.98381 0.96513 1.21713 0.95334 1.02182 0.95669 1.21486 0.90904 0.93696 0.95474 1.45486 1.09736 1.41579 1.40474 1.20084 0.81625 0.82652 0.84134 1.90758 1.56049 1.40928 1.56148 1.21730 1.00167 0.96260 0.98222 0.95918 0.94281 0.93185 0.88309 0.95059 0.92574 0.77997 0.91451 0.91549 0.91776 0.90321 0.88696 0.90409 0.91259 0.76803 0.87449 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.98 5.45 -26.74 -0.15 -3.13 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -13.54 4.83 -54.93 -0.27 -13.80 16 14 C 0.51 9.10 5.04 -10.98 -0.06 9.05 16 15 O -0.54 -11.53 13.04 5.55 0.07 -11.45 16 16 C -0.09 -1.10 0.63 -155.44 -0.10 -1.20 16 17 C -0.14 -1.58 7.71 37.16 0.29 -1.29 16 18 C -0.11 -1.22 4.34 -26.60 -0.12 -1.34 16 19 C 0.11 0.86 6.38 -4.49 -0.03 0.83 16 20 N -0.72 -7.00 5.24 -61.39 -0.32 -7.33 16 21 C 0.53 6.95 7.14 -11.87 -0.08 6.87 16 22 O -0.56 -9.51 17.78 5.55 0.10 -9.42 16 23 C -0.12 -1.61 4.66 -28.10 -0.13 -1.74 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.79 5.65 -51.93 -0.29 0.49 16 26 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 27 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 6.62 7.71 -40.82 -0.31 6.30 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 7.54 -51.93 -0.39 0.35 16 33 H 0.06 0.61 5.91 -51.93 -0.31 0.31 16 34 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 35 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.47 6.87 -51.93 -0.36 0.11 16 38 H 0.40 3.29 8.80 -40.82 -0.36 2.93 16 39 H 0.11 1.37 7.94 -51.94 -0.41 0.96 16 40 H 0.11 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -31.06 313.70 -6.72 -37.78 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.03 Total: 8.31 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.61 Total: -0.54 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.04 Total: -44.77 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.17 Total: -20.87 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.06 -6.72 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.943 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds