Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47339 * 305.00140 * 3 2 1 5 5 C 1.50700 * 109.47041 * 185.00001 * 3 2 1 6 6 H 1.08011 * 120.00020 * 240.00033 * 5 3 2 7 7 C 1.37873 * 120.00560 * 60.00197 * 5 3 2 8 8 N 1.31519 * 119.99275 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00776 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47292 * 89.99517 * 9 7 5 11 11 H 1.48500 * 109.47430 * 210.00153 * 9 7 5 12 12 H 1.48501 * 109.46983 * 330.00099 * 9 7 5 13 13 N 1.46503 * 109.47111 * 65.00168 * 3 2 1 14 14 C 1.34774 * 119.99667 * 275.00050 * 13 3 2 15 15 O 1.21284 * 120.00320 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99654 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.70096 * 300.51209 * 16 14 13 18 18 C 1.53347 * 109.67170 * 180.02562 * 16 14 13 19 19 C 1.52915 * 108.67477 * 172.73729 * 18 16 14 20 20 N 1.45757 * 110.49061 * 50.74811 * 19 18 16 21 21 C 1.33355 * 124.10452 * 340.93061 * 20 19 18 22 22 O 1.21285 * 118.24329 * 182.20138 * 21 20 19 23 23 C 1.50173 * 123.50960 * 2.21535 * 21 20 19 24 24 H 1.09000 * 109.47644 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47163 * 299.99976 * 1 2 3 26 26 H 1.09003 * 109.47168 * 59.99704 * 1 2 3 27 27 H 1.09005 * 109.46754 * 239.99697 * 2 1 3 28 28 H 1.09003 * 109.47168 * 120.00296 * 2 1 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00061 * 94.99815 * 13 3 2 31 31 H 1.08997 * 109.46706 * 299.48851 * 17 16 14 32 32 H 1.09001 * 109.46287 * 59.48543 * 17 16 14 33 33 H 1.08993 * 109.46838 * 179.48588 * 17 16 14 34 34 H 1.09004 * 109.59985 * 292.48660 * 18 16 14 35 35 H 1.09001 * 109.60890 * 52.97677 * 18 16 14 36 36 H 1.09003 * 109.30355 * 171.06195 * 19 18 16 37 37 H 1.09007 * 109.30111 * 290.43491 * 19 18 16 38 38 H 0.97000 * 117.94459 * 160.92305 * 20 19 18 39 39 H 1.08989 * 109.40611 * 222.29012 * 23 21 20 40 40 H 1.08999 * 109.39741 * 102.54572 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4441 -0.1238 6 1 4.1473 1.8887 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3818 10 1 6.5549 -0.3504 -0.7602 11 1 6.3830 0.9221 -2.8173 12 1 6.5570 2.0735 -0.6902 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3392 2.6327 0.4341 16 6 0.0368 3.3386 2.6545 17 6 0.0914 2.3297 3.8035 18 6 -1.3854 3.8974 2.5260 19 6 -1.8343 4.4130 3.8938 20 7 -0.8287 5.3046 4.4582 21 6 0.4437 5.3434 4.0609 22 8 1.2006 6.0992 4.6325 23 6 0.9893 4.5015 2.9435 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0620 -2.9495 30 1 2.2720 2.1230 1.9978 31 1 -0.6017 1.5128 3.6027 32 1 1.1033 1.9343 3.8919 33 1 -0.1885 2.8234 4.7340 34 1 -1.3930 4.7159 1.8062 35 1 -2.0598 3.1084 2.1933 36 1 -2.7744 4.9537 3.7843 37 1 -1.9845 3.5680 4.5659 38 1 -1.1023 5.9075 5.1671 39 1 1.9647 4.1081 3.2295 40 1 1.0956 5.1135 2.0478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897893557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = -114.551346 kcal Electronic energy + Delta-G solvation = -21704.457780 eV Core-core repulsion = 18517.360870 eV Total energy + Delta-G solvation = -3187.096910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00429 -40.38688 -37.86360 -36.76745 -35.00424 -34.12729 -32.56533 -30.66298 -29.16312 -28.57369 -25.72885 -24.97277 -23.82750 -21.81502 -21.03726 -19.46284 -19.00684 -18.05999 -17.54503 -17.19202 -16.88296 -16.44573 -16.21902 -16.04033 -15.60077 -14.90123 -14.68087 -14.56032 -14.34969 -13.82015 -13.54374 -13.35860 -13.16720 -13.01493 -12.89198 -12.70403 -12.64910 -12.43316 -12.15872 -12.05161 -11.91859 -11.82282 -11.54693 -11.23399 -11.01802 -10.54965 -10.31345 -10.04889 -9.58170 -8.15228 -6.31827 1.44342 1.45626 1.55259 1.55657 1.85285 2.32575 2.36030 2.61728 3.14404 3.48691 3.57986 3.73043 3.76581 4.12460 4.20972 4.41609 4.52835 4.57488 4.61156 4.63538 4.72656 4.79290 4.84752 4.94637 5.04256 5.10423 5.16941 5.30496 5.33642 5.47486 5.59310 5.65559 5.83085 5.86104 5.94969 6.20375 6.28211 6.76840 7.02082 7.18677 7.35446 7.60630 8.89706 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.005430 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.702286 B = 5155.731304 C = 5932.311633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.580 6.580 16 C -0.072 4.072 17 C -0.141 4.141 18 C -0.112 4.112 19 C 0.113 3.887 20 N -0.705 5.705 21 C 0.531 3.469 22 O -0.603 6.603 23 C -0.123 4.123 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.400 0.600 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.409 0.591 39 H 0.108 0.892 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 4.292 13.922 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.461 6.461 16 C -0.075 4.075 17 C -0.199 4.199 18 C -0.150 4.150 19 C -0.010 4.010 20 N -0.356 5.356 21 C 0.319 3.681 22 O -0.485 6.485 23 C -0.163 4.163 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.246 0.754 39 H 0.126 0.874 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.074 4.382 13.176 17.155 hybrid contribution 1.239 0.098 -0.325 1.285 sum -8.835 4.480 12.851 16.226 Atomic orbital electron populations 1.21671 0.96717 0.99131 1.00442 1.21771 0.93989 0.99054 1.01175 1.18343 0.93372 0.89273 0.81499 0.98339 1.21589 0.91705 1.38734 1.06533 0.91329 1.25698 1.02918 0.94494 0.95107 1.70042 1.36874 1.38406 1.09878 0.85449 0.79644 0.78776 0.77094 1.19708 1.21320 1.19191 1.46278 1.15606 1.55823 1.17324 1.20810 0.81700 0.78332 0.89483 1.90660 1.52325 1.61116 1.41988 1.20880 0.97411 0.95651 0.93607 1.21965 1.03608 0.98023 0.96256 1.21734 0.93950 1.01740 0.97567 1.21658 0.91076 0.94580 0.93705 1.45410 1.08761 1.41375 1.40029 1.19932 0.82417 0.82089 0.83707 1.90746 1.57482 1.42717 1.57555 1.21682 1.00458 0.96183 0.97977 0.93734 0.93202 0.95636 0.91281 0.94111 0.92670 0.76542 0.90899 0.91643 0.89569 0.91734 0.88732 0.87232 0.88742 0.75440 0.87366 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.52 71.98 0.61 -4.59 16 2 C -0.12 -5.75 5.45 30.59 0.17 -5.58 16 3 C 0.28 13.79 2.24 44.24 0.10 13.89 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.09 16 5 C -0.55 -28.46 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -51.64 11.29 21.45 0.24 -51.40 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 13 N -0.70 -27.15 4.83 -446.10 -2.16 -29.31 16 14 C 0.51 18.07 5.04 87.66 0.44 18.52 16 15 O -0.58 -25.00 13.04 -3.04 -0.04 -25.04 16 16 C -0.07 -1.74 0.63 -52.79 -0.03 -1.78 16 17 C -0.14 -2.69 7.71 71.98 0.56 -2.14 16 18 C -0.11 -2.23 4.34 30.68 0.13 -2.09 16 19 C 0.11 1.33 6.38 86.49 0.55 1.88 16 20 N -0.70 -11.46 5.24 -467.30 -2.45 -13.90 16 21 C 0.53 13.07 7.14 87.71 0.63 13.70 16 22 O -0.60 -19.87 17.78 -3.04 -0.05 -19.93 16 23 C -0.12 -3.09 4.66 29.71 0.14 -2.95 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.98 5.65 -2.39 -0.01 1.97 16 26 H 0.02 1.17 7.85 -2.39 -0.02 1.16 16 27 H 0.07 3.73 5.95 -2.38 -0.01 3.71 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.40 13.44 7.71 -92.71 -0.71 12.73 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.28 7.54 -2.39 -0.02 1.27 16 33 H 0.09 1.29 5.91 -2.39 -0.01 1.28 16 34 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 35 H 0.09 1.95 7.90 -2.39 -0.02 1.93 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.78 6.87 -2.38 -0.02 0.76 16 38 H 0.41 5.35 8.80 -92.71 -0.82 4.54 16 39 H 0.11 2.68 7.94 -2.39 -0.02 2.66 16 40 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 Total: -1.00 -69.48 313.70 1.06 -68.41 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.47 Total: 25.15 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 3.96 Total: 2.03 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -4.36 Total: -94.61 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.48 1.06 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.138 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds