Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 H 1.09006 * 109.47051 * 54.99849 * 3 2 1 5 5 C 1.50700 * 109.47463 * 174.99974 * 3 2 1 6 6 H 1.07994 * 120.00353 * 120.00098 * 5 3 2 7 7 C 1.37879 * 119.99803 * 300.00100 * 5 3 2 8 8 N 1.31512 * 120.00120 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99986 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47123 * 90.00047 * 9 7 5 11 11 H 1.48499 * 109.46866 * 209.99733 * 9 7 5 12 12 H 1.48498 * 109.46946 * 329.99579 * 9 7 5 13 13 N 1.46503 * 109.47417 * 295.00052 * 3 2 1 14 14 C 1.34776 * 120.00048 * 84.99460 * 13 3 2 15 15 O 1.21287 * 119.99898 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00224 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.69930 * 293.19964 * 16 14 13 18 18 C 1.53345 * 109.67367 * 53.71150 * 16 14 13 19 19 C 1.52920 * 108.80830 * 52.12469 * 18 16 14 20 20 N 1.46123 * 110.28778 * 50.69166 * 19 18 16 21 21 C 1.33346 * 124.17589 * 341.03480 * 20 19 18 22 22 O 1.21291 * 118.24201 * 182.15190 * 21 20 19 23 23 C 1.50170 * 123.51244 * 2.17476 * 21 20 19 24 24 H 1.09002 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47013 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.47122 * 60.00256 * 1 2 3 27 27 H 1.09004 * 109.47030 * 240.00316 * 2 1 3 28 28 H 1.08997 * 109.47122 * 119.99744 * 2 1 3 29 29 H 0.97000 * 120.00307 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99996 * 264.99988 * 13 3 2 31 31 H 1.08996 * 109.47305 * 180.51895 * 17 16 14 32 32 H 1.09004 * 109.47042 * 300.51490 * 17 16 14 33 33 H 1.08996 * 109.47141 * 60.51355 * 17 16 14 34 34 H 1.08994 * 109.60044 * 171.95832 * 18 16 14 35 35 H 1.08992 * 109.60439 * 292.28684 * 18 16 14 36 36 H 1.08998 * 109.30406 * 171.14246 * 19 18 16 37 37 H 1.09007 * 109.29970 * 290.52434 * 19 18 16 38 38 H 0.97000 * 117.87011 * 160.98763 * 20 19 18 39 39 H 1.08999 * 109.40268 * 222.28944 * 23 21 20 40 40 H 1.08999 * 109.33352 * 102.50210 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8796 1.3359 9 14 3.0964 0.1088 2.5701 10 1 2.8756 -1.3273 2.2633 11 1 3.7936 0.2347 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6326 -0.4341 16 6 0.0362 3.3377 -2.6548 17 6 0.8960 4.5845 -2.8728 18 6 0.2286 2.3669 -3.8261 19 6 -0.4906 1.0565 -3.5035 20 7 -1.8659 1.3224 -3.0875 21 6 -2.3029 2.5068 -2.6582 22 8 -3.4587 2.5973 -2.3018 23 6 -1.4408 3.7346 -2.5928 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8771 0.4819 2.1129 30 1 2.2720 2.1232 -1.9977 31 1 0.5982 5.0735 -3.8002 32 1 0.7568 5.2722 -2.0386 33 1 1.9452 4.2960 -2.9347 34 1 -0.1916 2.8007 -4.7334 35 1 1.2916 2.1745 -3.9709 36 1 -0.4945 0.4202 -4.3884 37 1 0.0366 0.5450 -2.6980 38 1 -2.5012 0.5904 -3.1271 39 1 -1.6346 4.2639 -1.6599 40 1 -1.6762 4.3861 -3.4344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897893558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -82.815305 kcal Electronic energy + Delta-G solvation = -22393.658678 eV Core-core repulsion = 19207.937946 eV Total energy + Delta-G solvation = -3185.720732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98754 -38.85010 -36.45391 -35.40720 -34.06348 -32.40351 -31.42934 -29.69518 -28.05327 -27.47991 -23.97262 -23.36913 -22.47385 -20.69628 -19.83098 -18.93954 -17.49840 -16.67016 -16.26360 -15.95092 -15.75933 -15.41964 -14.68701 -14.54919 -13.99027 -13.54618 -13.46881 -13.34011 -12.97612 -12.68360 -12.37579 -12.24604 -12.09548 -11.84711 -11.75275 -11.64915 -11.29971 -11.04164 -10.94020 -10.81127 -10.65649 -9.96920 -9.66909 -9.58343 -9.27682 -9.10525 -8.99757 -8.79199 -8.11081 -6.25587 -4.28243 2.80925 3.13731 3.20292 3.32881 3.35868 3.38070 3.78856 4.27750 4.42021 4.51833 4.58498 4.69985 5.08176 5.19110 5.20978 5.29551 5.41428 5.51111 5.61272 5.65502 5.72625 5.85378 5.95276 5.97115 6.00253 6.09205 6.15277 6.59424 6.66139 6.80065 6.81354 6.93402 7.21524 7.25492 7.39268 7.46978 8.09580 8.32600 8.46861 8.71037 8.88252 9.35570 10.86326 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.006584 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.986730 B = 4251.473121 C = 4648.710742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.510 3.490 15 O -0.541 6.541 16 C -0.088 4.088 17 C -0.138 4.138 18 C -0.125 4.125 19 C 0.098 3.902 20 N -0.719 5.719 21 C 0.534 3.466 22 O -0.563 6.563 23 C -0.112 4.112 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.267 0.733 30 H 0.393 0.607 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.397 0.603 39 H 0.111 0.889 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 2.286 -12.714 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.295 3.705 15 O -0.418 6.418 16 C -0.092 4.092 17 C -0.195 4.195 18 C -0.163 4.163 19 C -0.026 4.026 20 N -0.371 5.371 21 C 0.321 3.679 22 O -0.442 6.442 23 C -0.152 4.152 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.129 0.871 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.921 2.446 -11.707 14.920 hybrid contribution -0.103 -0.918 0.409 1.010 sum -9.024 1.528 -11.298 14.540 Atomic orbital electron populations 1.21986 0.96962 0.99061 1.02690 1.22285 0.94251 1.00008 1.01070 1.19144 0.95603 0.88422 0.82898 0.93394 1.21029 0.88568 1.39853 1.07844 0.90186 1.24824 0.94831 0.95129 0.97638 1.69859 1.08671 1.44456 1.29818 0.86925 0.80999 0.79938 0.80999 1.20286 1.22152 1.18500 1.46143 1.14676 1.55839 1.17877 1.20116 0.82704 0.79091 0.88635 1.90713 1.51439 1.59420 1.40278 1.21000 0.96303 0.97285 0.94610 1.21805 0.99598 0.95603 1.02527 1.21972 1.02264 0.94467 0.97578 1.21631 0.82339 0.97759 1.00919 1.45445 1.12123 1.12408 1.67112 1.19968 0.87917 0.84810 0.75186 1.90726 1.19401 1.85294 1.48741 1.21552 0.91765 0.96015 1.05826 0.95102 0.92929 0.92260 0.92370 0.92815 0.92262 0.77327 0.91502 0.91544 0.91195 0.89986 0.88947 0.90169 0.90461 0.76839 0.87081 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.52 37.16 0.32 -2.63 16 2 C -0.14 -2.91 5.11 -26.73 -0.14 -3.05 16 3 C 0.24 5.45 1.83 -69.08 -0.13 5.32 16 4 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 5 C -0.54 -13.80 9.31 -34.44 -0.32 -14.13 16 6 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 9 Si 0.88 21.45 24.41 -169.99 -4.15 17.30 16 10 H -0.28 -6.52 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.70 -12.40 4.73 -54.93 -0.26 -12.66 16 14 C 0.51 8.62 3.57 -10.99 -0.04 8.58 16 15 O -0.54 -11.35 12.50 5.55 0.07 -11.28 16 16 C -0.09 -1.07 0.66 -155.45 -0.10 -1.17 16 17 C -0.14 -1.38 8.46 37.16 0.31 -1.07 16 18 C -0.12 -1.15 4.69 -26.59 -0.12 -1.27 16 19 C 0.10 1.01 6.48 -4.29 -0.03 0.98 16 20 N -0.72 -9.01 5.45 -61.14 -0.33 -9.35 16 21 C 0.53 8.20 6.97 -11.88 -0.08 8.12 16 22 O -0.56 -10.86 17.78 5.55 0.10 -10.77 16 23 C -0.11 -1.45 4.47 -28.10 -0.13 -1.58 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 26 H 0.06 1.10 3.61 -51.93 -0.19 0.91 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.22 3.21 -51.93 -0.17 1.06 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 30 H 0.39 6.06 7.74 -40.82 -0.32 5.74 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.09 0.72 7.53 -51.93 -0.39 0.33 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.97 5.44 -51.93 -0.28 0.69 16 38 H 0.40 4.59 8.80 -40.82 -0.36 4.23 16 39 H 0.11 1.66 7.63 -51.93 -0.40 1.26 16 40 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -33.30 304.59 -5.59 -38.89 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.83 Total: 8.07 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.55 Total: 0.19 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.18 Total: -47.00 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.17 Total: -22.05 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.30 -5.59 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.921 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds