Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 H 1.09006 * 109.47051 * 54.99849 * 3 2 1 5 5 C 1.50700 * 109.47463 * 174.99974 * 3 2 1 6 6 H 1.07994 * 120.00353 * 120.00098 * 5 3 2 7 7 C 1.37879 * 119.99803 * 300.00100 * 5 3 2 8 8 N 1.31512 * 120.00120 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99986 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47123 * 90.00047 * 9 7 5 11 11 H 1.48499 * 109.46866 * 209.99733 * 9 7 5 12 12 H 1.48498 * 109.46946 * 329.99579 * 9 7 5 13 13 N 1.46503 * 109.47417 * 295.00052 * 3 2 1 14 14 C 1.34776 * 120.00048 * 84.99460 * 13 3 2 15 15 O 1.21287 * 119.99898 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00224 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.69930 * 293.19964 * 16 14 13 18 18 C 1.53345 * 109.67367 * 53.71150 * 16 14 13 19 19 C 1.52920 * 108.80830 * 52.12469 * 18 16 14 20 20 N 1.46123 * 110.28778 * 50.69166 * 19 18 16 21 21 C 1.33346 * 124.17589 * 341.03480 * 20 19 18 22 22 O 1.21291 * 118.24201 * 182.15190 * 21 20 19 23 23 C 1.50170 * 123.51244 * 2.17476 * 21 20 19 24 24 H 1.09002 * 109.46760 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47013 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.47122 * 60.00256 * 1 2 3 27 27 H 1.09004 * 109.47030 * 240.00316 * 2 1 3 28 28 H 1.08997 * 109.47122 * 119.99744 * 2 1 3 29 29 H 0.97000 * 120.00307 * 179.97438 * 8 7 5 30 30 H 0.96998 * 119.99996 * 264.99988 * 13 3 2 31 31 H 1.08996 * 109.47305 * 180.51895 * 17 16 14 32 32 H 1.09004 * 109.47042 * 300.51490 * 17 16 14 33 33 H 1.08996 * 109.47141 * 60.51355 * 17 16 14 34 34 H 1.08994 * 109.60044 * 171.95832 * 18 16 14 35 35 H 1.08992 * 109.60439 * 292.28684 * 18 16 14 36 36 H 1.08998 * 109.30406 * 171.14246 * 19 18 16 37 37 H 1.09007 * 109.29970 * 290.52434 * 19 18 16 38 38 H 0.97000 * 117.87011 * 160.98763 * 20 19 18 39 39 H 1.08999 * 109.40268 * 222.28944 * 23 21 20 40 40 H 1.08999 * 109.33352 * 102.50210 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8796 1.3359 9 14 3.0964 0.1088 2.5701 10 1 2.8756 -1.3273 2.2633 11 1 3.7936 0.2347 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6326 -0.4341 16 6 0.0362 3.3377 -2.6548 17 6 0.8960 4.5845 -2.8728 18 6 0.2286 2.3669 -3.8261 19 6 -0.4906 1.0565 -3.5035 20 7 -1.8659 1.3224 -3.0875 21 6 -2.3029 2.5068 -2.6582 22 8 -3.4587 2.5973 -2.3018 23 6 -1.4408 3.7346 -2.5928 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8771 0.4819 2.1129 30 1 2.2720 2.1232 -1.9977 31 1 0.5982 5.0735 -3.8002 32 1 0.7568 5.2722 -2.0386 33 1 1.9452 4.2960 -2.9347 34 1 -0.1916 2.8007 -4.7334 35 1 1.2916 2.1745 -3.9709 36 1 -0.4945 0.4202 -4.3884 37 1 0.0366 0.5450 -2.6980 38 1 -2.5012 0.5904 -3.1271 39 1 -1.6346 4.2639 -1.6599 40 1 -1.6762 4.3861 -3.4344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897893558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = -109.732337 kcal Electronic energy + Delta-G solvation = -22394.825888 eV Core-core repulsion = 19207.937946 eV Total energy + Delta-G solvation = -3186.887942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.14586 -40.19522 -37.71162 -36.98119 -35.13049 -34.37165 -33.01665 -30.68029 -29.44406 -28.80705 -25.18976 -24.62966 -23.97537 -22.11568 -21.26916 -20.28717 -18.75269 -18.27337 -17.61719 -17.29327 -17.03028 -16.65813 -16.22207 -15.94211 -15.24447 -15.06432 -14.87524 -14.50196 -14.30422 -13.96167 -13.75661 -13.65188 -13.42630 -13.07358 -13.00674 -12.85274 -12.78259 -12.60559 -12.38203 -12.15752 -11.87150 -11.71846 -11.36473 -11.22270 -10.86104 -10.82705 -10.50237 -10.06491 -9.70789 -8.38223 -6.42018 1.23786 1.33525 1.42188 1.66330 1.82067 2.24390 2.37222 2.46309 2.98248 3.47682 3.59151 3.66336 3.82719 4.08450 4.20629 4.29677 4.40407 4.43298 4.48545 4.60532 4.71961 4.76720 4.83062 4.89291 4.95884 4.98830 5.04343 5.11306 5.17607 5.26258 5.33542 5.42976 5.53110 5.70122 5.84055 6.16004 6.35398 6.61109 6.92973 7.21526 7.22899 7.52909 8.76620 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027126 B = 0.006584 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.986730 B = 4251.473121 C = 4648.710742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.251 3.749 4 H 0.013 0.987 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.929 3.071 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.268 1.268 13 N -0.692 5.692 14 C 0.508 3.492 15 O -0.585 6.585 16 C -0.077 4.077 17 C -0.136 4.136 18 C -0.122 4.122 19 C 0.091 3.909 20 N -0.711 5.711 21 C 0.524 3.476 22 O -0.614 6.614 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.269 0.731 30 H 0.407 0.593 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.400 0.600 39 H 0.084 0.916 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 2.017 -15.413 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.146 3.854 4 H 0.031 0.969 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.758 3.242 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.193 1.193 13 N -0.341 5.341 14 C 0.295 3.705 15 O -0.466 6.466 16 C -0.081 4.081 17 C -0.193 4.193 18 C -0.159 4.159 19 C -0.033 4.033 20 N -0.361 5.361 21 C 0.313 3.687 22 O -0.498 6.498 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.243 0.757 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.235 0.765 39 H 0.102 0.898 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.174 2.157 -14.455 17.256 hybrid contribution -0.005 -0.794 1.213 1.450 sum -9.179 1.363 -13.242 16.170 Atomic orbital electron populations 1.21892 0.95769 1.00265 1.01906 1.22180 0.95218 0.98687 1.01122 1.18715 0.93173 0.89459 0.84087 0.96911 1.21280 0.90228 1.38092 1.06829 0.91819 1.25437 0.95508 0.96044 0.99599 1.69953 1.10006 1.46271 1.30758 0.86154 0.79188 0.79983 0.78899 1.18700 1.22325 1.19342 1.45906 1.15647 1.55900 1.16692 1.21030 0.81456 0.77980 0.90006 1.90707 1.52567 1.60811 1.42480 1.20982 0.95818 0.98529 0.92753 1.21852 0.99405 0.94295 1.03779 1.22107 1.03780 0.92924 0.97131 1.21884 0.80647 0.99069 1.01658 1.45490 1.13247 1.11658 1.65698 1.20431 0.87508 0.86126 0.74618 1.90698 1.21587 1.86257 1.51214 1.21583 0.91900 0.95390 1.06090 0.92789 0.95682 0.91203 0.90519 0.94392 0.92173 0.75666 0.87698 0.93233 0.90777 0.86498 0.86861 0.86251 0.92671 0.76497 0.89753 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.52 71.98 0.61 -4.81 16 2 C -0.13 -5.52 5.11 30.59 0.16 -5.36 16 3 C 0.25 11.23 1.83 44.24 0.08 11.31 16 4 H 0.01 0.68 6.64 -2.38 -0.02 0.66 16 5 C -0.53 -27.24 9.31 25.60 0.24 -27.00 16 6 H 0.06 3.45 7.98 -2.91 -0.02 3.42 16 7 C 0.03 1.88 5.45 84.66 0.46 2.34 16 8 N -0.93 -54.40 13.96 21.45 0.30 -54.10 16 9 Si 0.93 44.68 24.41 68.60 1.67 46.36 16 10 H -0.26 -11.83 6.83 99.48 0.68 -11.15 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 12 H -0.27 -13.13 6.53 99.48 0.65 -12.48 16 13 N -0.69 -23.82 4.73 -446.08 -2.11 -25.93 16 14 C 0.51 16.63 3.57 87.66 0.31 16.95 16 15 O -0.59 -24.85 12.50 -3.05 -0.04 -24.89 16 16 C -0.08 -1.64 0.66 -52.79 -0.03 -1.68 16 17 C -0.14 -2.26 8.46 71.98 0.61 -1.65 16 18 C -0.12 -1.65 4.69 30.68 0.14 -1.51 16 19 C 0.09 1.52 6.48 86.42 0.56 2.08 16 20 N -0.71 -16.20 5.45 -466.52 -2.54 -18.74 16 21 C 0.52 15.46 6.97 87.71 0.61 16.07 16 22 O -0.61 -23.84 17.78 -3.06 -0.05 -23.89 16 23 C -0.11 -2.64 4.47 29.70 0.13 -2.50 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 26 H 0.07 2.51 3.61 -2.39 -0.01 2.50 16 27 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.04 1.69 3.21 -2.39 -0.01 1.68 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.41 11.68 7.74 -92.71 -0.72 10.96 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.07 1.19 8.10 -2.39 -0.02 1.18 16 34 H 0.12 0.91 8.12 -2.39 -0.02 0.89 16 35 H 0.11 1.15 7.53 -2.39 -0.02 1.13 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.21 5.44 -2.38 -0.01 1.20 16 38 H 0.40 8.53 8.80 -92.71 -0.82 7.71 16 39 H 0.08 2.52 7.63 -2.39 -0.02 2.50 16 40 H 0.14 2.24 8.10 -2.39 -0.02 2.22 16 Total: -1.00 -75.70 304.59 0.57 -75.13 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.55 Total: 21.84 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 3.89 Total: 4.24 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.35 Total: -98.77 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.09 Total: -48.78 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.36 kcal Total: -75.70 0.57 -75.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.603 kcal (2) G-P(sol) polarization free energy of solvation -75.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds