Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46722 * 2 1 4 4 H 1.09003 * 109.46903 * 55.00246 * 3 2 1 5 5 C 1.50700 * 109.46848 * 174.99935 * 3 2 1 6 6 H 1.07997 * 120.00272 * 120.00385 * 5 3 2 7 7 C 1.37881 * 119.99885 * 300.00211 * 5 3 2 8 8 N 1.31509 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99885 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46997 * 59.99867 * 9 7 5 11 11 H 1.48499 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47247 * 300.00124 * 9 7 5 13 13 N 1.46493 * 109.47638 * 294.99806 * 3 2 1 14 14 C 1.34784 * 119.99864 * 84.99998 * 13 3 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 3 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 3 17 17 C 1.53000 * 109.67235 * 300.50025 * 16 14 13 18 18 C 1.53346 * 109.67199 * 180.02562 * 16 14 13 19 19 C 1.52928 * 108.67262 * 172.73587 * 18 16 14 20 20 N 1.45747 * 110.48693 * 50.75351 * 19 18 16 21 21 C 1.33351 * 124.10877 * 340.94738 * 20 19 18 22 22 O 1.21290 * 118.24520 * 182.18106 * 21 20 19 23 23 C 1.50174 * 123.51170 * 2.17364 * 21 20 19 24 24 H 1.08991 * 109.46913 * 299.99779 * 1 2 3 25 25 H 1.08998 * 109.47035 * 59.99890 * 1 2 3 26 26 H 1.09001 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47320 * 240.00396 * 2 1 3 28 28 H 1.08998 * 109.47035 * 120.00109 * 2 1 3 29 29 H 0.96995 * 120.00482 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00740 * 264.72691 * 13 3 2 31 31 H 1.08994 * 109.47274 * 59.99697 * 17 16 14 32 32 H 1.09000 * 109.47344 * 180.02562 * 17 16 14 33 33 H 1.09001 * 109.46757 * 299.99590 * 17 16 14 34 34 H 1.09003 * 109.60326 * 292.48694 * 18 16 14 35 35 H 1.08999 * 109.60278 * 52.81783 * 18 16 14 36 36 H 1.09003 * 109.29802 * 171.06529 * 19 18 16 37 37 H 1.08995 * 109.29876 * 290.44080 * 19 18 16 38 38 H 0.97004 * 117.95155 * 160.92580 * 20 19 18 39 39 H 1.08992 * 109.41729 * 222.31887 * 23 21 20 40 40 H 1.09005 * 109.38187 * 102.57640 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8813 1.3819 10 1 6.4994 2.2816 1.3823 11 1 6.3977 0.2178 2.6510 12 1 6.5976 0.1475 0.2350 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6279 -0.4359 16 6 0.0387 3.3436 -2.6524 17 6 1.0139 4.4831 -2.9548 18 6 -1.3835 3.9024 -2.5238 19 6 -1.6947 4.7397 -3.7651 20 7 -1.3936 3.9873 -4.9765 21 6 -0.5955 2.9196 -5.0148 22 8 -0.3864 2.3975 -6.0894 23 6 0.0583 2.3292 -3.7985 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0610 2.9499 30 1 2.2734 2.1268 -1.9964 31 1 2.0224 4.0816 -3.0540 32 1 0.7241 4.9723 -3.8847 33 1 0.9898 5.2076 -2.1408 34 1 -2.0945 3.0794 -2.4502 35 1 -1.4522 4.5260 -1.6325 36 1 -2.7507 5.0099 -3.7619 37 1 -1.0933 5.6485 -3.7466 38 1 -1.7993 4.2814 -5.8071 39 1 1.0900 2.0674 -4.0329 40 1 -0.4821 1.4319 -3.4970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897893559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -91.689488 kcal Electronic energy + Delta-G solvation = -21724.698007 eV Core-core repulsion = 18538.592462 eV Total energy + Delta-G solvation = -3186.105545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90143 -39.01204 -36.67712 -35.04514 -33.91024 -32.30134 -30.84002 -29.70782 -27.90263 -26.97922 -24.60757 -23.41514 -22.46425 -20.25188 -19.41098 -18.40729 -17.70467 -16.69739 -16.31530 -15.78982 -15.52888 -15.18514 -14.77191 -14.66967 -14.17524 -13.62426 -13.48454 -13.23431 -12.72018 -12.67174 -12.17178 -11.93089 -11.78861 -11.50677 -11.45684 -11.24878 -11.04017 -10.93765 -10.84113 -10.83212 -10.35320 -10.18591 -10.07664 -9.64543 -9.21850 -9.07953 -8.88734 -8.51262 -7.85562 -6.14119 -4.23733 2.57844 3.16959 3.24356 3.29203 3.30121 3.31889 3.92119 4.33289 4.46318 4.57828 4.71728 4.78333 5.07086 5.15248 5.17366 5.30243 5.41525 5.58460 5.61834 5.79191 5.80160 5.96103 6.07836 6.22143 6.37130 6.43016 6.62699 6.64261 7.01533 7.16634 7.19183 7.33857 7.41810 7.59528 7.70472 7.87599 8.11928 8.16150 8.63003 8.74825 9.08252 9.43738 10.91062 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.005089 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.331226 B = 5500.752899 C = 5745.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.513 3.487 15 O -0.545 6.545 16 C -0.085 4.085 17 C -0.144 4.144 18 C -0.111 4.111 19 C 0.108 3.892 20 N -0.720 5.720 21 C 0.528 3.472 22 O -0.560 6.560 23 C -0.124 4.124 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.107 0.893 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 8.076 -10.108 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.423 6.423 16 C -0.089 4.089 17 C -0.202 4.202 18 C -0.149 4.149 19 C -0.016 4.016 20 N -0.372 5.372 21 C 0.315 3.685 22 O -0.439 6.439 23 C -0.163 4.163 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.125 0.875 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.027 7.580 -9.541 14.592 hybrid contribution 1.127 0.101 -0.443 1.216 sum -6.900 7.682 -9.984 14.363 Atomic orbital electron populations 1.21838 0.98392 0.98033 1.01129 1.21940 0.92566 0.99843 1.02335 1.18785 0.94180 0.89172 0.80949 0.93320 1.21188 0.90718 1.39168 1.06285 0.92174 1.24871 0.98540 0.94770 0.95379 1.69874 1.35228 1.37498 1.09337 0.86531 0.84929 0.78303 0.77474 1.20214 1.21142 1.20152 1.46507 1.14443 1.55524 1.18573 1.19964 0.82921 0.79302 0.88174 1.90673 1.51376 1.59967 1.40322 1.20951 0.97333 0.96300 0.94317 1.21943 0.98709 0.97405 1.02107 1.21713 0.94978 1.00769 0.97454 1.21485 1.01110 0.94735 0.84237 1.45481 1.49236 1.30514 1.12002 1.20072 0.78067 0.79576 0.90774 1.90758 1.62320 1.60257 1.30589 1.21727 1.03631 0.99285 0.91706 0.93159 0.94378 0.95876 0.94998 0.88302 0.92499 0.78000 0.91487 0.91811 0.91369 0.90380 0.88638 0.90397 0.91210 0.76788 0.87490 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.52 2.24 -69.09 -0.15 6.37 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.70 8.73 -34.44 -0.30 -14.00 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.70 -13.55 4.83 -54.94 -0.27 -13.81 16 14 C 0.51 9.11 5.04 -10.98 -0.06 9.05 16 15 O -0.54 -11.53 13.02 5.56 0.07 -11.45 16 16 C -0.09 -1.10 0.63 -155.45 -0.10 -1.20 16 17 C -0.14 -1.62 7.72 37.16 0.29 -1.33 16 18 C -0.11 -1.23 4.34 -26.59 -0.12 -1.34 16 19 C 0.11 0.86 6.38 -4.48 -0.03 0.83 16 20 N -0.72 -6.97 5.24 -61.39 -0.32 -7.29 16 21 C 0.53 6.88 7.15 -11.87 -0.08 6.80 16 22 O -0.56 -9.42 17.78 5.55 0.10 -9.32 16 23 C -0.12 -1.58 4.66 -28.10 -0.13 -1.71 16 24 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 25 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 6.62 7.71 -40.82 -0.31 6.31 16 31 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 32 H 0.06 0.62 5.90 -51.93 -0.31 0.31 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 35 H 0.10 1.10 7.90 -51.93 -0.41 0.69 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 6.86 -51.93 -0.36 0.12 16 38 H 0.40 3.27 8.80 -40.82 -0.36 2.91 16 39 H 0.11 1.34 7.94 -51.93 -0.41 0.93 16 40 H 0.11 1.41 8.09 -51.93 -0.42 0.99 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -30.97 313.68 -6.72 -37.68 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.03 Total: 8.47 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.61 Total: -0.65 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.04 Total: -44.70 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.97 -6.72 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.007 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds