Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46722 * 2 1 4 4 H 1.09003 * 109.46903 * 55.00246 * 3 2 1 5 5 C 1.50700 * 109.46848 * 174.99935 * 3 2 1 6 6 H 1.07997 * 120.00272 * 120.00385 * 5 3 2 7 7 C 1.37881 * 119.99885 * 300.00211 * 5 3 2 8 8 N 1.31509 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99885 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46997 * 59.99867 * 9 7 5 11 11 H 1.48499 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47247 * 300.00124 * 9 7 5 13 13 N 1.46493 * 109.47638 * 294.99806 * 3 2 1 14 14 C 1.34784 * 119.99864 * 84.99998 * 13 3 2 15 15 O 1.21283 * 119.99649 * 359.72839 * 14 13 3 16 16 C 1.50694 * 119.99988 * 179.72721 * 14 13 3 17 17 C 1.53000 * 109.67235 * 300.50025 * 16 14 13 18 18 C 1.53346 * 109.67199 * 180.02562 * 16 14 13 19 19 C 1.52928 * 108.67262 * 172.73587 * 18 16 14 20 20 N 1.45747 * 110.48693 * 50.75351 * 19 18 16 21 21 C 1.33351 * 124.10877 * 340.94738 * 20 19 18 22 22 O 1.21290 * 118.24520 * 182.18106 * 21 20 19 23 23 C 1.50174 * 123.51170 * 2.17364 * 21 20 19 24 24 H 1.08991 * 109.46913 * 299.99779 * 1 2 3 25 25 H 1.08998 * 109.47035 * 59.99890 * 1 2 3 26 26 H 1.09001 * 109.46598 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47320 * 240.00396 * 2 1 3 28 28 H 1.08998 * 109.47035 * 120.00109 * 2 1 3 29 29 H 0.96995 * 120.00482 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00740 * 264.72691 * 13 3 2 31 31 H 1.08994 * 109.47274 * 59.99697 * 17 16 14 32 32 H 1.09000 * 109.47344 * 180.02562 * 17 16 14 33 33 H 1.09001 * 109.46757 * 299.99590 * 17 16 14 34 34 H 1.09003 * 109.60326 * 292.48694 * 18 16 14 35 35 H 1.08999 * 109.60278 * 52.81783 * 18 16 14 36 36 H 1.09003 * 109.29802 * 171.06529 * 19 18 16 37 37 H 1.08995 * 109.29876 * 290.44080 * 19 18 16 38 38 H 0.97004 * 117.95155 * 160.92580 * 20 19 18 39 39 H 1.08992 * 109.41729 * 222.31887 * 23 21 20 40 40 H 1.09005 * 109.38187 * 102.57640 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8813 1.3819 10 1 6.4994 2.2816 1.3823 11 1 6.3977 0.2178 2.6510 12 1 6.5976 0.1475 0.2350 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6279 -0.4359 16 6 0.0387 3.3436 -2.6524 17 6 1.0139 4.4831 -2.9548 18 6 -1.3835 3.9024 -2.5238 19 6 -1.6947 4.7397 -3.7651 20 7 -1.3936 3.9873 -4.9765 21 6 -0.5955 2.9196 -5.0148 22 8 -0.3864 2.3975 -6.0894 23 6 0.0583 2.3292 -3.7985 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8292 -0.0610 2.9499 30 1 2.2734 2.1268 -1.9964 31 1 2.0224 4.0816 -3.0540 32 1 0.7241 4.9723 -3.8847 33 1 0.9898 5.2076 -2.1408 34 1 -2.0945 3.0794 -2.4502 35 1 -1.4522 4.5260 -1.6325 36 1 -2.7507 5.0099 -3.7619 37 1 -1.0933 5.6485 -3.7466 38 1 -1.7993 4.2814 -5.8071 39 1 1.0900 2.0674 -4.0329 40 1 -0.4821 1.4319 -3.4970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897893559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -114.350225 kcal Electronic energy + Delta-G solvation = -21725.680650 eV Core-core repulsion = 18538.592462 eV Total energy + Delta-G solvation = -3187.088188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.00528 -40.38055 -37.86507 -36.76590 -35.00440 -34.12315 -32.57826 -30.68267 -29.06487 -28.65600 -25.73442 -24.99090 -23.80559 -21.82652 -21.04208 -19.46961 -19.01545 -18.02986 -17.47071 -17.18599 -17.04665 -16.44630 -16.20512 -15.92799 -15.51871 -15.07939 -14.67787 -14.57695 -14.34542 -13.68488 -13.66210 -13.33775 -13.17438 -13.01882 -12.88663 -12.69905 -12.64374 -12.43586 -12.17240 -12.04977 -11.93358 -11.80850 -11.56481 -11.24504 -11.02870 -10.53923 -10.30963 -10.04743 -9.58287 -8.14269 -6.31119 1.46103 1.46992 1.54696 1.56279 1.85410 2.32763 2.36630 2.62005 3.15291 3.48536 3.57800 3.72640 3.76778 4.12436 4.20854 4.41549 4.51093 4.56067 4.59356 4.62771 4.72302 4.77273 4.83838 4.94425 5.03666 5.10066 5.16845 5.27543 5.33599 5.45682 5.58447 5.65516 5.82162 5.86106 5.94707 6.19716 6.28703 6.77146 7.02180 7.19053 7.35990 7.60733 8.90572 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.005089 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.331226 B = 5500.752899 C = 5745.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.580 6.580 16 C -0.072 4.072 17 C -0.142 4.142 18 C -0.112 4.112 19 C 0.113 3.887 20 N -0.705 5.705 21 C 0.531 3.469 22 O -0.602 6.602 23 C -0.122 4.122 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.409 0.591 39 H 0.109 0.891 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 9.483 -11.851 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.350 5.350 14 C 0.297 3.703 15 O -0.461 6.461 16 C -0.076 4.076 17 C -0.199 4.199 18 C -0.150 4.150 19 C -0.010 4.010 20 N -0.356 5.356 21 C 0.318 3.682 22 O -0.484 6.484 23 C -0.162 4.162 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.235 0.765 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.246 0.754 39 H 0.127 0.873 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.015 9.035 -11.311 16.548 hybrid contribution 1.046 -0.302 0.150 1.099 sum -6.969 8.733 -11.161 15.793 Atomic orbital electron populations 1.21675 0.96900 0.99043 1.00369 1.21793 0.93822 0.99360 1.01140 1.18332 0.93452 0.89071 0.81535 0.98139 1.21553 0.91612 1.38857 1.06554 0.91184 1.25712 1.02975 0.94448 0.95107 1.70029 1.37009 1.38366 1.09847 0.85492 0.79541 0.78431 0.77430 1.19618 1.21319 1.19192 1.46278 1.15593 1.55749 1.17414 1.20809 0.81681 0.78320 0.89521 1.90659 1.52184 1.61002 1.42218 1.20874 0.99080 0.96453 0.91165 1.21962 0.98072 0.96650 1.03230 1.21730 0.93219 1.00844 0.99197 1.21641 1.03611 0.94113 0.81644 1.45409 1.47667 1.29273 1.13246 1.19946 0.78299 0.80103 0.89821 1.90748 1.64108 1.61826 1.31764 1.21681 1.03843 0.98978 0.91664 0.95372 0.93575 0.93893 0.94313 0.91163 0.92670 0.76543 0.91693 0.89501 0.91273 0.91483 0.88964 0.87203 0.88927 0.75444 0.87289 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.51 71.98 0.61 -4.76 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.73 16 3 C 0.28 13.83 2.24 44.25 0.10 13.92 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -28.25 8.73 25.60 0.22 -28.02 16 6 H 0.07 3.38 7.73 -2.91 -0.02 3.36 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -51.56 11.29 21.45 0.24 -51.31 16 9 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 N -0.70 -27.15 4.83 -446.10 -2.16 -29.30 16 14 C 0.51 18.08 5.04 87.65 0.44 18.53 16 15 O -0.58 -24.99 13.02 -3.04 -0.04 -25.03 16 16 C -0.07 -1.75 0.63 -52.79 -0.03 -1.78 16 17 C -0.14 -2.83 7.72 71.98 0.56 -2.28 16 18 C -0.11 -2.23 4.34 30.69 0.13 -2.10 16 19 C 0.11 1.35 6.38 86.50 0.55 1.90 16 20 N -0.70 -11.33 5.24 -467.32 -2.45 -13.78 16 21 C 0.53 12.78 7.15 87.71 0.63 13.41 16 22 O -0.60 -19.46 17.78 -3.06 -0.05 -19.51 16 23 C -0.12 -2.95 4.66 29.71 0.14 -2.82 16 24 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 25 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.40 13.43 7.71 -92.71 -0.71 12.71 16 31 H 0.06 1.34 7.55 -2.39 -0.02 1.32 16 32 H 0.09 1.36 5.90 -2.39 -0.01 1.35 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.09 1.95 7.90 -2.39 -0.02 1.93 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.81 6.86 -2.39 -0.02 0.80 16 38 H 0.41 5.29 8.80 -92.71 -0.82 4.47 16 39 H 0.11 2.59 7.94 -2.39 -0.02 2.57 16 40 H 0.10 2.53 8.09 -2.38 -0.02 2.51 16 Total: -1.00 -68.86 313.68 1.06 -67.80 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.47 Total: 25.92 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 3.97 Total: 1.66 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.36 Total: -94.40 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.09 Total: -44.55 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -68.86 1.06 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.551 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds