Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47059 * 2 1 4 4 H 1.09007 * 109.47303 * 304.99933 * 3 2 1 5 5 C 1.50701 * 109.47260 * 184.99862 * 3 2 1 6 6 H 1.07996 * 120.00414 * 240.00544 * 5 3 2 7 7 C 1.37887 * 119.99593 * 59.99918 * 5 3 2 8 8 N 1.31511 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99636 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00221 * 9 7 5 11 11 H 1.48505 * 109.46836 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47444 * 299.99966 * 9 7 5 13 13 N 1.46500 * 109.47053 * 64.99960 * 3 2 1 14 14 C 1.34771 * 120.00092 * 274.99768 * 13 3 2 15 15 O 1.21279 * 120.00172 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99863 * 179.72576 * 14 13 3 17 17 C 1.53006 * 109.67165 * 294.39797 * 16 14 13 18 18 C 1.53341 * 109.67762 * 54.89770 * 16 14 13 19 19 C 1.52928 * 108.67121 * 52.20184 * 18 16 14 20 20 N 1.45754 * 110.48534 * 50.75497 * 19 18 16 21 21 C 1.33355 * 124.10724 * 340.94690 * 20 19 18 22 22 O 1.21285 * 118.24576 * 182.17836 * 21 20 19 23 23 C 1.50173 * 123.50880 * 2.17805 * 21 20 19 24 24 H 1.09001 * 109.47063 * 300.00012 * 1 2 3 25 25 H 1.09003 * 109.47139 * 60.00346 * 1 2 3 26 26 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47063 * 239.99988 * 2 1 3 28 28 H 1.08995 * 109.47318 * 120.00276 * 2 1 3 29 29 H 0.97006 * 119.99390 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99838 * 95.00215 * 13 3 2 31 31 H 1.09005 * 109.46626 * 60.00050 * 17 16 14 32 32 H 1.09001 * 109.47171 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.47291 * 300.00625 * 17 16 14 34 34 H 1.09002 * 109.60691 * 171.95712 * 18 16 14 35 35 H 1.08997 * 109.60183 * 292.28870 * 18 16 14 36 36 H 1.08995 * 109.29890 * 171.06629 * 19 18 16 37 37 H 1.08997 * 109.30178 * 290.65180 * 19 18 16 38 38 H 0.96998 * 117.94642 * 160.92399 * 20 19 18 39 39 H 1.08999 * 109.41006 * 222.31526 * 23 21 20 40 40 H 1.08996 * 109.38106 * 102.58228 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3977 0.2178 -2.6510 12 1 6.4994 2.2815 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6643 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0342 3.3327 2.6568 17 6 -0.0617 2.2876 3.7702 18 6 1.0746 4.3943 3.0334 19 6 1.2850 5.3204 1.8347 20 7 0.0051 5.8061 1.3344 21 6 -1.1678 5.2274 1.5949 22 8 -2.1649 5.6985 1.0901 23 6 -1.3201 4.0237 2.4798 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 0.9069 1.8044 3.8992 32 1 -0.3522 2.7743 4.7013 33 1 -0.8081 1.5397 3.5033 34 1 0.7150 4.9733 3.8840 35 1 2.0152 3.9087 3.2929 36 1 1.8985 6.1686 2.1382 37 1 1.7942 4.7730 1.0415 38 1 0.0065 6.6001 0.7773 39 1 -2.0254 3.3275 2.0261 40 1 -1.6973 4.3361 3.4536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897893560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = -92.152345 kcal Electronic energy + Delta-G solvation = -22138.944896 eV Core-core repulsion = 18952.819280 eV Total energy + Delta-G solvation = -3186.125616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82069 -38.69898 -36.33650 -35.07838 -33.94658 -32.37252 -30.88508 -29.51251 -28.00787 -26.94793 -23.89684 -23.37655 -22.48264 -20.41036 -19.51975 -18.73026 -17.39635 -16.43377 -16.15785 -15.67746 -15.44682 -15.22314 -14.60482 -14.42186 -13.98093 -13.44659 -13.28444 -13.09948 -12.71410 -12.61531 -12.24390 -12.03284 -11.75442 -11.60242 -11.49803 -11.25292 -11.19417 -11.02173 -10.85615 -10.72432 -10.35644 -10.19433 -9.65688 -9.56811 -9.09511 -8.97062 -8.85654 -8.52740 -7.85082 -6.15842 -4.25945 2.90864 3.21368 3.27373 3.28022 3.32522 3.49357 3.95227 4.31683 4.51052 4.62421 4.71196 4.80400 5.15293 5.30574 5.34721 5.39163 5.50821 5.57721 5.67022 5.73966 5.83008 6.00501 6.08830 6.12274 6.37286 6.43857 6.64250 6.92723 7.01095 7.17829 7.34368 7.42420 7.50943 7.58063 7.69503 7.86443 8.15178 8.43010 8.62559 8.73767 9.09837 9.41818 10.89255 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.006109 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.894632 B = 4582.503449 C = 4901.291488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.705 5.705 14 C 0.509 3.491 15 O -0.539 6.539 16 C -0.091 4.091 17 C -0.136 4.136 18 C -0.123 4.123 19 C 0.102 3.898 20 N -0.718 5.718 21 C 0.534 3.466 22 O -0.565 6.565 23 C -0.110 4.110 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.397 0.603 39 H 0.110 0.890 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 5.827 12.868 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.293 3.707 15 O -0.417 6.417 16 C -0.094 4.094 17 C -0.194 4.194 18 C -0.161 4.161 19 C -0.022 4.022 20 N -0.370 5.370 21 C 0.321 3.679 22 O -0.444 6.444 23 C -0.150 4.150 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.128 0.872 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.856 5.708 11.859 13.467 hybrid contribution 1.517 0.166 0.007 1.526 sum -1.339 5.874 11.865 13.307 Atomic orbital electron populations 1.21839 0.98359 0.98010 1.01227 1.21930 0.92581 0.99881 1.02214 1.18756 0.94073 0.89142 0.80984 0.93451 1.21175 0.90698 1.39272 1.06267 0.92183 1.24885 0.98505 0.94810 0.95418 1.69885 1.35224 1.37392 1.09292 0.86539 0.84954 0.78280 0.77491 1.20171 1.21149 1.20231 1.46464 1.14480 1.55925 1.18392 1.20018 0.82987 0.79349 0.88355 1.90716 1.51331 1.59487 1.40164 1.21032 0.95874 0.96404 0.96114 1.21791 1.03193 0.97898 0.96506 1.21948 0.99862 0.96426 0.97833 1.21472 0.85112 0.98526 0.97097 1.45355 1.06538 1.31659 1.53406 1.19957 0.82571 0.84362 0.80981 1.90715 1.36660 1.64712 1.52288 1.21524 0.97812 0.95505 1.00203 0.94285 0.93201 0.95910 0.88383 0.95081 0.92478 0.78146 0.91459 0.91640 0.91691 0.90248 0.89093 0.90345 0.90502 0.76819 0.87189 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.34 7.58 -51.92 -0.39 0.95 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.16 11.29 55.43 0.63 -23.53 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -13.15 4.78 -54.93 -0.26 -13.41 16 14 C 0.51 9.13 3.39 -10.99 -0.04 9.10 16 15 O -0.54 -12.08 12.47 5.56 0.07 -12.01 16 16 C -0.09 -1.16 0.66 -155.45 -0.10 -1.27 16 17 C -0.14 -1.41 8.45 37.16 0.31 -1.09 16 18 C -0.12 -1.24 4.72 -26.59 -0.13 -1.37 16 19 C 0.10 1.20 6.61 -4.48 -0.03 1.17 16 20 N -0.72 -10.04 5.44 -61.39 -0.33 -10.37 16 21 C 0.53 8.86 6.95 -11.87 -0.08 8.78 16 22 O -0.56 -11.55 17.78 5.55 0.10 -11.45 16 23 C -0.11 -1.54 4.47 -28.10 -0.13 -1.66 16 24 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 25 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 6.16 7.69 -40.82 -0.31 5.85 16 31 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 35 H 0.09 0.79 7.57 -51.93 -0.39 0.40 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.12 7.29 -51.93 -0.38 0.75 16 38 H 0.40 5.14 8.80 -40.82 -0.36 4.78 16 39 H 0.11 1.74 7.65 -51.93 -0.40 1.34 16 40 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -32.14 315.10 -6.80 -38.94 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.16 Total: 10.07 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.57 Total: 2.09 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.03 Total: -47.32 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.14 -6.80 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.216 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds