Wall clock time and date at job start Mon Mar 30 2020 01:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47059 * 2 1 4 4 H 1.09007 * 109.47303 * 304.99933 * 3 2 1 5 5 C 1.50701 * 109.47260 * 184.99862 * 3 2 1 6 6 H 1.07996 * 120.00414 * 240.00544 * 5 3 2 7 7 C 1.37887 * 119.99593 * 59.99918 * 5 3 2 8 8 N 1.31511 * 119.99871 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99636 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47217 * 60.00221 * 9 7 5 11 11 H 1.48505 * 109.46836 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47444 * 299.99966 * 9 7 5 13 13 N 1.46500 * 109.47053 * 64.99960 * 3 2 1 14 14 C 1.34771 * 120.00092 * 274.99768 * 13 3 2 15 15 O 1.21279 * 120.00172 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99863 * 179.72576 * 14 13 3 17 17 C 1.53006 * 109.67165 * 294.39797 * 16 14 13 18 18 C 1.53341 * 109.67762 * 54.89770 * 16 14 13 19 19 C 1.52928 * 108.67121 * 52.20184 * 18 16 14 20 20 N 1.45754 * 110.48534 * 50.75497 * 19 18 16 21 21 C 1.33355 * 124.10724 * 340.94690 * 20 19 18 22 22 O 1.21285 * 118.24576 * 182.17836 * 21 20 19 23 23 C 1.50173 * 123.50880 * 2.17805 * 21 20 19 24 24 H 1.09001 * 109.47063 * 300.00012 * 1 2 3 25 25 H 1.09003 * 109.47139 * 60.00346 * 1 2 3 26 26 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47063 * 239.99988 * 2 1 3 28 28 H 1.08995 * 109.47318 * 120.00276 * 2 1 3 29 29 H 0.97006 * 119.99390 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99838 * 95.00215 * 13 3 2 31 31 H 1.09005 * 109.46626 * 60.00050 * 17 16 14 32 32 H 1.09001 * 109.47171 * 180.02562 * 17 16 14 33 33 H 1.08994 * 109.47291 * 300.00625 * 17 16 14 34 34 H 1.09002 * 109.60691 * 171.95712 * 18 16 14 35 35 H 1.08997 * 109.60183 * 292.28870 * 18 16 14 36 36 H 1.08995 * 109.29890 * 171.06629 * 19 18 16 37 37 H 1.08997 * 109.30178 * 290.65180 * 19 18 16 38 38 H 0.96998 * 117.94642 * 160.92399 * 20 19 18 39 39 H 1.08999 * 109.41006 * 222.31526 * 23 21 20 40 40 H 1.08996 * 109.38106 * 102.58228 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3977 0.2178 -2.6510 12 1 6.4994 2.2815 -1.3822 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6643 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0342 3.3327 2.6568 17 6 -0.0617 2.2876 3.7702 18 6 1.0746 4.3943 3.0334 19 6 1.2850 5.3204 1.8347 20 7 0.0051 5.8061 1.3344 21 6 -1.1678 5.2274 1.5949 22 8 -2.1649 5.6985 1.0901 23 6 -1.3201 4.0237 2.4798 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 0.9069 1.8044 3.8992 32 1 -0.3522 2.7743 4.7013 33 1 -0.8081 1.5397 3.5033 34 1 0.7150 4.9733 3.8840 35 1 2.0152 3.9087 3.2929 36 1 1.8985 6.1686 2.1382 37 1 1.7942 4.7730 1.0415 38 1 0.0065 6.6001 0.7773 39 1 -2.0254 3.3275 2.0261 40 1 -1.6973 4.3361 3.4536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897893560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:42 Heat of formation + Delta-G solvation = -116.855317 kcal Electronic energy + Delta-G solvation = -22140.016097 eV Core-core repulsion = 18952.819280 eV Total energy + Delta-G solvation = -3187.196817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06064 -40.15299 -37.66815 -36.79189 -35.10069 -34.20854 -32.66008 -30.58869 -29.20396 -28.58967 -25.36052 -24.63929 -23.95055 -21.86883 -21.16353 -20.14707 -18.66712 -18.05886 -17.45910 -17.04061 -16.94361 -16.61548 -16.13850 -15.94888 -15.26966 -14.85263 -14.60131 -14.41146 -14.27628 -13.76000 -13.51030 -13.26656 -13.18642 -13.05487 -12.90330 -12.84287 -12.63569 -12.62886 -12.19335 -12.14699 -12.00770 -11.70805 -11.55706 -11.02750 -10.83536 -10.55262 -10.38623 -10.06701 -9.55581 -8.13386 -6.30758 1.46631 1.47858 1.55537 1.64360 1.93318 2.36687 2.39596 2.65974 3.16513 3.50546 3.60450 3.70991 3.83568 4.16197 4.42978 4.46096 4.49629 4.57811 4.61297 4.70557 4.76478 4.78538 4.91847 4.97184 5.05951 5.09093 5.17278 5.28641 5.35264 5.45762 5.58952 5.68067 5.81214 5.82485 5.97158 6.20195 6.35110 6.78959 7.06551 7.20691 7.37437 7.67979 8.91606 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023175 B = 0.006109 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.894632 B = 4582.503449 C = 4901.291488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.283 3.717 4 H -0.010 1.010 5 C -0.543 4.543 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.697 5.697 14 C 0.505 3.495 15 O -0.591 6.591 16 C -0.079 4.079 17 C -0.134 4.134 18 C -0.118 4.118 19 C 0.096 3.904 20 N -0.713 5.713 21 C 0.522 3.478 22 O -0.616 6.616 23 C -0.108 4.108 24 H 0.047 0.953 25 H 0.018 0.982 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.404 0.596 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.042 0.958 38 H 0.398 0.602 39 H 0.083 0.917 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 6.359 16.460 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.007 0.993 5 C -0.581 4.581 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.195 1.195 13 N -0.346 5.346 14 C 0.292 3.708 15 O -0.472 6.472 16 C -0.082 4.082 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.028 4.028 20 N -0.363 5.363 21 C 0.311 3.689 22 O -0.500 6.500 23 C -0.148 4.148 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.061 0.939 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.078 6.249 15.512 16.758 hybrid contribution 0.956 0.036 -1.162 1.505 sum -0.122 6.285 14.350 15.667 Atomic orbital electron populations 1.21671 0.97310 0.98892 1.00093 1.21784 0.93408 0.99551 1.01252 1.18251 0.93481 0.88846 0.81529 0.99255 1.21570 0.91378 1.38595 1.06553 0.90457 1.25781 1.03110 0.94554 0.95178 1.70065 1.37116 1.38578 1.09901 0.85466 0.79382 0.78468 0.77425 1.18673 1.21838 1.19533 1.46135 1.15419 1.55815 1.17184 1.21012 0.81749 0.78271 0.89768 1.90708 1.52661 1.61130 1.42661 1.21007 0.96010 0.97536 0.93677 1.21844 1.03548 0.96989 0.96703 1.22088 1.00086 0.95446 0.97968 1.21704 0.83974 1.00216 0.96856 1.45449 1.06859 1.31269 1.52693 1.20554 0.82522 0.84845 0.80980 1.90683 1.38493 1.66300 1.54500 1.21570 0.98070 0.93813 1.01334 0.93403 0.96314 0.93855 0.91452 0.93696 0.92834 0.76090 0.90449 0.87719 0.93090 0.86394 0.86733 0.86422 0.93938 0.76682 0.89814 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.79 2.24 44.24 0.10 13.89 16 4 H -0.01 -0.63 7.58 -2.38 -0.02 -0.65 16 5 C -0.54 -27.11 8.73 25.60 0.22 -26.89 16 6 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.01 0.71 5.29 84.66 0.45 1.16 16 8 N -0.92 -52.05 11.29 21.45 0.24 -51.81 16 9 Si 0.97 40.62 29.54 68.60 2.03 42.65 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 N -0.70 -25.52 4.78 -446.10 -2.13 -27.65 16 14 C 0.51 17.95 3.39 87.66 0.30 18.25 16 15 O -0.59 -27.56 12.47 -3.03 -0.04 -27.60 16 16 C -0.08 -1.81 0.66 -52.79 -0.03 -1.84 16 17 C -0.13 -2.18 8.45 71.98 0.61 -1.57 16 18 C -0.12 -1.86 4.72 30.68 0.14 -1.71 16 19 C 0.10 2.01 6.61 86.50 0.57 2.58 16 20 N -0.71 -19.32 5.44 -467.31 -2.54 -21.87 16 21 C 0.52 17.18 6.95 87.71 0.61 17.79 16 22 O -0.62 -25.92 17.78 -3.05 -0.05 -25.98 16 23 C -0.11 -2.82 4.47 29.71 0.13 -2.69 16 24 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 25 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 3.69 5.95 -2.39 -0.01 3.67 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 30 H 0.40 11.88 7.69 -92.70 -0.71 11.17 16 31 H 0.08 1.14 8.00 -2.38 -0.02 1.13 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.11 1.34 7.57 -2.39 -0.02 1.32 16 36 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.21 7.29 -2.39 -0.02 1.19 16 38 H 0.40 10.28 8.80 -92.71 -0.82 9.46 16 39 H 0.08 2.67 7.65 -2.39 -0.02 2.65 16 40 H 0.14 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -75.91 315.10 0.91 -75.00 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.47 Total: 28.81 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 3.88 Total: 8.44 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.43 Total: -101.33 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.09 Total: -53.58 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -75.91 0.91 -75.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897893560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.851 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds