Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46895 * 2 1 4 4 H 1.09001 * 109.47435 * 304.99608 * 3 2 1 5 5 C 1.50704 * 109.46964 * 185.00270 * 3 2 1 6 6 H 1.08002 * 119.99270 * 239.99767 * 5 3 2 7 7 C 1.37877 * 120.00356 * 59.99695 * 5 3 2 8 8 N 1.31512 * 119.99631 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99846 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47225 * 60.00172 * 9 7 5 11 11 H 1.48502 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47326 * 299.99591 * 9 7 5 13 13 N 1.46499 * 109.47600 * 65.00042 * 3 2 1 14 14 C 1.34779 * 119.99555 * 275.00018 * 13 3 2 15 15 O 1.21280 * 120.00284 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99532 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.29843 * 320.41229 * 16 14 13 18 18 C 1.52921 * 109.30362 * 79.99967 * 16 14 13 19 19 C 1.53345 * 108.67491 * 170.85634 * 18 16 14 20 20 C 1.53066 * 108.42615 * 292.46881 * 19 18 16 21 21 C 1.50176 * 109.89239 * 48.90080 * 20 19 18 22 22 O 1.21284 * 118.24680 * 162.13110 * 21 20 19 23 23 N 1.33359 * 123.50823 * 342.41681 * 21 20 19 24 24 C 1.46494 * 117.94854 * 182.20124 * 23 21 20 25 25 H 1.08997 * 109.46831 * 299.99714 * 1 2 3 26 26 H 1.08999 * 109.47086 * 60.00396 * 1 2 3 27 27 H 1.09003 * 109.47012 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47022 * 239.99399 * 2 1 3 29 29 H 1.08999 * 109.47086 * 119.99604 * 2 1 3 30 30 H 0.96996 * 119.99600 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00224 * 94.99589 * 13 3 2 32 32 H 1.08997 * 109.59835 * 51.10097 * 18 16 14 33 33 H 1.09000 * 109.60176 * 290.61662 * 18 16 14 34 34 H 1.08999 * 109.67005 * 172.73462 * 19 18 16 35 35 H 1.08994 * 109.70435 * 52.22108 * 19 18 16 36 36 H 1.08996 * 109.40478 * 288.77469 * 20 19 18 37 37 H 1.09000 * 109.40349 * 169.02678 * 20 19 18 38 38 H 1.09010 * 109.47269 * 359.97438 * 24 23 21 39 39 H 1.09001 * 109.47465 * 119.99458 * 24 23 21 40 40 H 1.09000 * 109.47529 * 240.00173 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5967 0.1453 -0.2342 11 1 6.3979 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0363 3.3377 2.6547 17 1 0.4034 2.7509 3.4968 18 6 0.6529 4.7362 2.7060 19 6 0.0586 5.4913 3.9011 20 6 -1.4240 5.7497 3.6214 21 6 -2.0877 4.4802 3.1705 22 8 -3.2977 4.4154 3.2225 23 7 -1.4175 3.4184 2.7212 24 6 -2.1910 2.2604 2.2665 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8294 -0.0620 -2.9494 31 1 2.2719 2.1232 1.9977 32 1 0.4231 5.2711 1.7845 33 1 1.7333 4.6553 2.8251 34 1 0.5785 6.4405 4.0307 35 1 0.1622 4.8899 4.8042 36 1 -1.5190 6.5047 2.8411 37 1 -1.9070 6.1076 4.5306 38 1 -3.2553 2.4682 2.3768 39 1 -1.9660 2.0619 1.2185 40 1 -1.9273 1.3891 2.8660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907387889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = -76.444293 kcal Electronic energy + Delta-G solvation = -21694.348222 eV Core-core repulsion = 18508.903758 eV Total energy + Delta-G solvation = -3185.444464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.78985 -38.90555 -36.28432 -35.15868 -33.89005 -32.51866 -31.25440 -29.71039 -27.14493 -26.90820 -24.91452 -23.01084 -22.28040 -20.72061 -19.48229 -18.62289 -17.58603 -16.55882 -16.39457 -15.98095 -15.32768 -15.10245 -14.68302 -14.31823 -14.21931 -13.87700 -13.52766 -13.15161 -12.74787 -12.58226 -12.12806 -12.02546 -11.72233 -11.70049 -11.32257 -11.30621 -11.14228 -11.06217 -10.99934 -10.85180 -10.39434 -10.22013 -9.78263 -9.69471 -9.32007 -9.13257 -8.59223 -8.32526 -7.92730 -6.18667 -4.28824 2.68565 2.92949 3.20760 3.23442 3.27140 3.28399 3.89385 4.29675 4.47187 4.62631 4.66815 4.72518 5.12021 5.13270 5.25526 5.38608 5.55917 5.59178 5.65982 5.70831 5.77753 5.94845 6.04063 6.29258 6.32252 6.40510 6.45465 6.58480 6.95660 7.10963 7.27650 7.33400 7.49362 7.55405 7.64837 7.81584 8.10510 8.22039 8.52791 8.68604 8.98035 9.38582 10.86513 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.005127 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.622492 B = 5459.888622 C = 6172.288626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.492 3.508 15 O -0.533 6.533 16 C 0.123 3.877 17 H 0.091 0.909 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.135 4.135 21 C 0.517 3.483 22 O -0.562 6.562 23 N -0.580 5.580 24 C 0.050 3.950 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 6.577 11.568 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.275 3.725 15 O -0.411 6.411 16 C 0.015 3.985 17 H 0.109 0.891 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.174 4.174 21 C 0.306 3.694 22 O -0.442 6.442 23 N -0.312 5.312 24 C -0.092 4.092 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.227 6.406 10.707 13.173 hybrid contribution 1.459 -0.151 0.212 1.482 sum -2.768 6.255 10.919 12.884 Atomic orbital electron populations 1.21879 0.98393 0.98203 1.01155 1.21939 0.92589 0.99753 1.02379 1.18814 0.94290 0.89166 0.80771 0.93243 1.21167 0.90587 1.39364 1.06369 0.92105 1.24878 0.98618 0.94730 0.95358 1.69876 1.35293 1.37328 1.09350 0.86515 0.84795 0.78323 0.77505 1.20153 1.21125 1.20177 1.46517 1.14275 1.55307 1.18765 1.20391 0.83326 0.79884 0.88858 1.90616 1.50761 1.59645 1.40100 1.21017 0.81160 0.98526 0.97799 0.89099 1.21850 1.01294 0.93308 1.00031 1.21659 0.94489 1.01446 0.98243 1.21661 0.96341 0.95619 1.03803 1.20098 0.87493 0.84736 0.77091 1.90679 1.14512 1.82535 1.56442 1.46827 1.05547 1.16495 1.62318 1.22238 0.97681 0.86438 1.02840 0.94275 0.93123 0.95755 0.88227 0.94995 0.92436 0.77864 0.90107 0.88842 0.90071 0.90914 0.88243 0.88278 0.89719 0.88138 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.61 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.36 2.24 -69.08 -0.15 6.20 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.85 11.29 55.43 0.63 -23.23 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 N -0.70 -12.95 5.02 -54.93 -0.28 -13.22 16 14 C 0.49 8.68 5.03 -10.98 -0.06 8.62 16 15 O -0.53 -11.33 11.04 5.56 0.06 -11.27 16 16 C 0.12 1.64 3.15 -69.52 -0.22 1.42 16 17 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.13 -1.36 5.29 -26.59 -0.14 -1.50 16 19 C -0.12 -1.01 6.03 -26.52 -0.16 -1.17 16 20 C -0.13 -1.39 6.03 -28.10 -0.17 -1.56 16 21 C 0.52 7.75 7.47 -11.87 -0.09 7.66 16 22 O -0.56 -10.38 15.95 5.55 0.09 -10.29 16 23 N -0.58 -8.73 2.95 -176.50 -0.52 -9.25 16 24 C 0.05 0.80 9.67 59.84 0.58 1.37 16 25 H 0.04 0.78 5.16 -51.93 -0.27 0.51 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.57 5.95 -51.93 -0.31 2.27 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.39 6.09 8.54 -40.82 -0.35 5.74 16 32 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.39 6.60 -51.92 -0.34 1.04 16 39 H 0.10 1.83 4.91 -51.93 -0.25 1.58 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -30.58 314.00 -7.03 -37.62 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.09 Total: 6.75 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.63 Total: 3.38 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.17 Total: -45.71 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.15 Total: -21.56 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.58 -7.03 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907387889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.829 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds