Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46895 * 2 1 4 4 H 1.09001 * 109.47435 * 304.99608 * 3 2 1 5 5 C 1.50704 * 109.46964 * 185.00270 * 3 2 1 6 6 H 1.08002 * 119.99270 * 239.99767 * 5 3 2 7 7 C 1.37877 * 120.00356 * 59.99695 * 5 3 2 8 8 N 1.31512 * 119.99631 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99846 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47225 * 60.00172 * 9 7 5 11 11 H 1.48502 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47326 * 299.99591 * 9 7 5 13 13 N 1.46499 * 109.47600 * 65.00042 * 3 2 1 14 14 C 1.34779 * 119.99555 * 275.00018 * 13 3 2 15 15 O 1.21280 * 120.00284 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99532 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.29843 * 320.41229 * 16 14 13 18 18 C 1.52921 * 109.30362 * 79.99967 * 16 14 13 19 19 C 1.53345 * 108.67491 * 170.85634 * 18 16 14 20 20 C 1.53066 * 108.42615 * 292.46881 * 19 18 16 21 21 C 1.50176 * 109.89239 * 48.90080 * 20 19 18 22 22 O 1.21284 * 118.24680 * 162.13110 * 21 20 19 23 23 N 1.33359 * 123.50823 * 342.41681 * 21 20 19 24 24 C 1.46494 * 117.94854 * 182.20124 * 23 21 20 25 25 H 1.08997 * 109.46831 * 299.99714 * 1 2 3 26 26 H 1.08999 * 109.47086 * 60.00396 * 1 2 3 27 27 H 1.09003 * 109.47012 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47022 * 239.99399 * 2 1 3 29 29 H 1.08999 * 109.47086 * 119.99604 * 2 1 3 30 30 H 0.96996 * 119.99600 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00224 * 94.99589 * 13 3 2 32 32 H 1.08997 * 109.59835 * 51.10097 * 18 16 14 33 33 H 1.09000 * 109.60176 * 290.61662 * 18 16 14 34 34 H 1.08999 * 109.67005 * 172.73462 * 19 18 16 35 35 H 1.08994 * 109.70435 * 52.22108 * 19 18 16 36 36 H 1.08996 * 109.40478 * 288.77469 * 20 19 18 37 37 H 1.09000 * 109.40349 * 169.02678 * 20 19 18 38 38 H 1.09010 * 109.47269 * 359.97438 * 24 23 21 39 39 H 1.09001 * 109.47465 * 119.99458 * 24 23 21 40 40 H 1.09000 * 109.47529 * 240.00173 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0050 0.8801 -1.3811 10 1 6.5967 0.1453 -0.2342 11 1 6.3979 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3809 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3393 2.6326 0.4340 16 6 0.0363 3.3377 2.6547 17 1 0.4034 2.7509 3.4968 18 6 0.6529 4.7362 2.7060 19 6 0.0586 5.4913 3.9011 20 6 -1.4240 5.7497 3.6214 21 6 -2.0877 4.4802 3.1705 22 8 -3.2977 4.4154 3.2225 23 7 -1.4175 3.4184 2.7212 24 6 -2.1910 2.2604 2.2665 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8294 -0.0620 -2.9494 31 1 2.2719 2.1232 1.9977 32 1 0.4231 5.2711 1.7845 33 1 1.7333 4.6553 2.8251 34 1 0.5785 6.4405 4.0307 35 1 0.1622 4.8899 4.8042 36 1 -1.5190 6.5047 2.8411 37 1 -1.9070 6.1076 4.5306 38 1 -3.2553 2.4682 2.3768 39 1 -1.9660 2.0619 1.2185 40 1 -1.9273 1.3891 2.8660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907387889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -97.562345 kcal Electronic energy + Delta-G solvation = -21695.263970 eV Core-core repulsion = 18508.903758 eV Total energy + Delta-G solvation = -3186.360211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99402 -40.33432 -37.57408 -36.73201 -34.98272 -34.26591 -32.95547 -30.90928 -28.87177 -28.11095 -26.12719 -24.78506 -23.19116 -22.31978 -21.17069 -19.68002 -19.13277 -17.80478 -17.63050 -17.50373 -16.91503 -16.49874 -16.19858 -15.77661 -15.28246 -15.10235 -14.62597 -14.46359 -14.37681 -14.08690 -13.53179 -13.34363 -13.15443 -13.11290 -12.90832 -12.79491 -12.62734 -12.47924 -12.16251 -12.00267 -11.94227 -11.79937 -11.55723 -11.08967 -11.02007 -10.60168 -10.49654 -9.72793 -9.52006 -8.13438 -6.30548 1.47881 1.48852 1.52495 1.56692 1.66530 2.00193 2.38453 2.61368 3.16726 3.51260 3.70161 3.79531 3.88122 4.12717 4.25190 4.39544 4.50480 4.58302 4.59483 4.62755 4.76663 4.81012 4.87559 4.97535 4.98349 5.06804 5.11123 5.26752 5.28718 5.32794 5.45290 5.58288 5.64925 5.81387 5.94058 6.19483 6.39466 6.77848 6.95288 7.09462 7.36495 7.57745 8.91447 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029887 B = 0.005127 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.622492 B = 5459.888622 C = 6172.288626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.291 1.291 12 H -0.270 1.270 13 N -0.695 5.695 14 C 0.489 3.511 15 O -0.574 6.574 16 C 0.130 3.870 17 H 0.126 0.874 18 C -0.126 4.126 19 C -0.108 4.108 20 C -0.130 4.130 21 C 0.508 3.492 22 O -0.605 6.605 23 N -0.585 5.585 24 C 0.054 3.946 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.407 0.593 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 7.685 14.359 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.195 1.195 13 N -0.344 5.344 14 C 0.275 3.725 15 O -0.454 6.454 16 C 0.023 3.977 17 H 0.144 0.856 18 C -0.164 4.164 19 C -0.145 4.145 20 C -0.169 4.169 21 C 0.299 3.701 22 O -0.488 6.488 23 N -0.316 5.316 24 C -0.089 4.089 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.242 0.758 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.442 7.533 13.546 15.691 hybrid contribution 0.844 -0.493 -0.696 1.200 sum -1.598 7.040 12.850 14.739 Atomic orbital electron populations 1.21716 0.97086 0.99069 1.00335 1.21790 0.93647 0.99330 1.01298 1.18335 0.93609 0.88992 0.81364 0.98475 1.21560 0.91388 1.38735 1.06605 0.90578 1.25745 1.03053 0.94502 0.95151 1.70047 1.37088 1.38447 1.09926 0.85466 0.79428 0.78457 0.77389 1.18887 1.21738 1.19536 1.46199 1.15229 1.55304 1.17702 1.21201 0.82266 0.78981 0.90048 1.90625 1.51806 1.60858 1.42134 1.21183 0.80279 1.00445 0.95763 0.85617 1.21943 1.02620 0.91328 1.00508 1.21664 0.92602 1.02877 0.97395 1.21745 0.97708 0.92825 1.04641 1.21061 0.87197 0.85683 0.76188 1.90657 1.16559 1.83288 1.58258 1.46998 1.06293 1.16322 1.61982 1.22057 0.97432 0.87778 1.01629 0.93197 0.95823 0.93911 0.91295 0.93880 0.92769 0.75785 0.92094 0.86535 0.86974 0.89164 0.87586 0.86439 0.90797 0.90742 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.52 71.98 0.61 -4.74 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.52 16 3 C 0.28 13.36 2.24 44.24 0.10 13.46 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.54 -26.89 8.73 25.60 0.22 -26.66 16 6 H 0.08 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -51.00 11.29 21.45 0.24 -50.76 16 9 Si 0.97 40.24 29.54 68.60 2.03 42.27 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 N -0.70 -24.99 5.02 -446.10 -2.24 -27.23 16 14 C 0.49 16.94 5.03 87.66 0.44 17.38 16 15 O -0.57 -25.13 11.04 -3.03 -0.03 -25.16 16 16 C 0.13 3.16 3.15 44.36 0.14 3.30 16 17 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 18 C -0.13 -2.26 5.29 30.68 0.16 -2.10 16 19 C -0.11 -1.29 6.03 30.73 0.19 -1.10 16 20 C -0.13 -2.28 6.03 29.71 0.18 -2.10 16 21 C 0.51 14.56 7.47 87.71 0.66 15.21 16 22 O -0.60 -22.29 15.95 -3.04 -0.05 -22.34 16 23 N -0.59 -16.89 2.95 -831.50 -2.46 -19.35 16 24 C 0.05 1.72 9.67 127.77 1.24 2.96 16 25 H 0.05 2.00 5.16 -2.39 -0.01 1.99 16 26 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 3.68 5.95 -2.39 -0.01 3.67 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.41 11.68 8.54 -92.71 -0.79 10.89 16 32 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.85 8.13 -2.39 -0.02 0.83 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.50 6.60 -2.38 -0.02 2.48 16 39 H 0.07 2.81 4.91 -2.39 -0.01 2.80 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.09 314.00 2.29 -67.80 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.25 Total: 23.43 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 4.55 Total: 11.34 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.45 Total: -97.34 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -0.08 Total: -47.50 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -70.09 2.29 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907387889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds