Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99506 * 3 2 1 6 6 H 1.08006 * 119.99834 * 119.99517 * 5 3 2 7 7 C 1.37877 * 120.00423 * 300.00347 * 5 3 2 8 8 N 1.31510 * 119.99576 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00281 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47452 * 119.99812 * 9 7 5 12 12 H 1.48498 * 109.47195 * 239.99870 * 9 7 5 13 13 N 1.46500 * 109.47170 * 294.99688 * 3 2 1 14 14 C 1.34785 * 119.99980 * 84.99927 * 13 3 2 15 15 O 1.21283 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99773 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.30075 * 320.41704 * 16 14 13 18 18 C 1.52920 * 109.30110 * 80.00172 * 16 14 13 19 19 C 1.53342 * 108.67601 * 171.06036 * 18 16 14 20 20 C 1.53074 * 108.42764 * 292.47261 * 19 18 16 21 21 C 1.50177 * 109.88912 * 48.89624 * 20 19 18 22 22 O 1.21288 * 118.24185 * 162.44051 * 21 20 19 23 23 N 1.33347 * 123.51146 * 342.41910 * 21 20 19 24 24 C 1.46502 * 117.94673 * 182.22063 * 23 21 20 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 29 29 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 30 30 H 0.97002 * 120.00364 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00116 * 265.00375 * 13 3 2 32 32 H 1.09001 * 109.60425 * 290.81833 * 18 16 14 33 33 H 1.09003 * 109.60476 * 51.30874 * 18 16 14 34 34 H 1.09005 * 109.67427 * 52.20020 * 19 18 16 35 35 H 1.08996 * 109.67809 * 172.69641 * 19 18 16 36 36 H 1.09002 * 109.40026 * 169.02542 * 20 19 18 37 37 H 1.08996 * 109.39938 * 288.76944 * 20 19 18 38 38 H 1.08998 * 109.47173 * 269.99954 * 24 23 21 39 39 H 1.09004 * 109.47186 * 30.00613 * 24 23 21 40 40 H 1.09001 * 109.46959 * 150.00361 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8801 1.3813 10 1 6.5988 1.5442 0.1933 11 1 6.3999 1.6157 2.6093 12 1 6.4962 -0.5189 1.4629 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.8900 3.8850 -3.0546 18 6 -0.4016 2.2766 -3.6654 19 6 -1.0130 2.9806 -4.8827 20 6 -2.3229 3.6443 -4.4504 21 6 -2.1031 4.4389 -3.1952 22 8 -2.9270 5.2767 -2.8946 23 7 -1.0508 4.2725 -2.3933 24 6 -0.9831 5.0800 -1.1728 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8292 -0.0610 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 0.4626 1.6903 -3.9778 33 1 -1.1450 1.6224 -3.2097 34 1 -0.3227 3.7383 -5.2535 35 1 -1.2123 2.2505 -5.6671 36 1 -2.6714 4.3073 -5.2423 37 1 -3.0742 2.8765 -4.2660 38 1 -0.4598 6.0127 -1.3828 39 1 -1.9929 5.2999 -0.8262 40 1 -0.4463 4.5280 -0.4012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907388039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -76.225525 kcal Electronic energy + Delta-G solvation = -21680.148001 eV Core-core repulsion = 18494.713024 eV Total energy + Delta-G solvation = -3185.434977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79882 -38.92462 -36.27897 -35.20633 -33.87759 -32.52773 -31.20870 -29.79865 -27.19285 -26.81005 -24.94185 -23.05675 -22.29787 -20.69355 -19.49639 -18.62747 -17.58146 -16.52365 -16.39473 -16.01217 -15.49588 -15.02820 -14.63036 -14.31412 -14.21810 -13.79634 -13.55962 -13.31266 -12.76589 -12.47224 -12.21430 -12.09005 -11.78241 -11.56804 -11.38261 -11.33102 -11.13969 -11.05062 -10.98743 -10.83031 -10.36680 -10.27560 -9.79040 -9.69146 -9.28041 -9.12461 -8.58155 -8.47270 -7.91395 -6.19691 -4.29677 2.68924 2.91544 3.18726 3.23901 3.27413 3.29213 3.87683 4.29169 4.47120 4.61172 4.66100 4.70910 5.11947 5.12208 5.24723 5.37991 5.54949 5.58498 5.65671 5.69653 5.79847 5.89672 6.01576 6.26941 6.31240 6.37172 6.44669 6.57472 6.94211 7.10287 7.25686 7.32034 7.49151 7.55626 7.64147 7.80472 8.09355 8.22202 8.51232 8.67650 8.95858 9.37906 10.85551 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031007 B = 0.004800 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.794237 B = 5831.802590 C = 5853.164532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.492 3.508 15 O -0.532 6.532 16 C 0.122 3.878 17 H 0.092 0.908 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.135 4.135 21 C 0.516 3.484 22 O -0.560 6.560 23 N -0.580 5.580 24 C 0.064 3.936 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.099 0.901 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 2.784 -13.030 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.275 3.725 15 O -0.411 6.411 16 C 0.014 3.986 17 H 0.110 0.890 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.174 4.174 21 C 0.305 3.695 22 O -0.439 6.439 23 N -0.312 5.312 24 C -0.078 4.078 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.480 3.077 -11.998 13.544 hybrid contribution 1.407 -0.140 -0.176 1.425 sum -4.073 2.938 -12.173 13.168 Atomic orbital electron populations 1.21842 0.98335 0.98104 1.01158 1.21936 0.92559 0.99729 1.02385 1.18833 0.94342 0.89213 0.80729 0.93236 1.21240 0.90575 1.39188 1.06374 0.91991 1.24881 0.98645 0.94731 0.95353 1.69896 1.35119 1.37489 1.09334 0.86402 0.84782 0.77810 0.78160 1.19733 1.20865 1.20861 1.46530 1.14138 1.55454 1.18683 1.20372 0.83194 0.80109 0.88804 1.90670 1.51249 1.58928 1.40226 1.21035 0.90769 0.91413 0.95416 0.89032 1.21849 1.02873 0.97019 0.94715 1.21661 0.96216 1.00270 0.97689 1.21664 0.99644 1.00510 0.95610 1.20095 0.80391 0.83685 0.85370 1.90695 1.43119 1.35938 1.74186 1.46876 1.21528 1.39090 1.23676 1.22063 1.04042 0.94453 0.87213 0.95817 0.93171 0.94384 0.88246 0.94959 0.92541 0.77819 0.88925 0.90169 0.90876 0.90085 0.88281 0.88274 0.93556 0.90664 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.31 2.24 -69.09 -0.15 6.15 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.30 8.73 -34.44 -0.30 -13.60 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.80 11.29 55.43 0.63 -23.17 16 9 Si 0.90 19.83 29.54 -169.99 -5.02 14.80 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -12.85 5.02 -54.93 -0.28 -13.13 16 14 C 0.49 8.62 4.78 -10.98 -0.05 8.56 16 15 O -0.53 -11.27 11.24 5.55 0.06 -11.21 16 16 C 0.12 1.62 3.14 -69.53 -0.22 1.40 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.13 -1.32 5.29 -26.60 -0.14 -1.46 16 19 C -0.12 -0.99 6.03 -26.52 -0.16 -1.15 16 20 C -0.13 -1.38 6.03 -28.10 -0.17 -1.55 16 21 C 0.52 7.76 7.47 -11.87 -0.09 7.67 16 22 O -0.56 -10.43 16.21 5.55 0.09 -10.34 16 23 N -0.58 -8.77 2.96 -176.51 -0.52 -9.29 16 24 C 0.06 1.04 9.59 59.85 0.57 1.61 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 28 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.39 6.05 8.54 -40.82 -0.35 5.70 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.29 7.20 -51.93 -0.37 0.91 16 40 H 0.10 1.79 5.01 -51.93 -0.26 1.53 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -30.65 315.33 -7.07 -37.73 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.15 Total: 6.21 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.63 Total: 3.65 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.17 Total: -45.59 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.15 Total: -21.55 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.65 -7.07 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907388039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.499 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds