Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99506 * 3 2 1 6 6 H 1.08006 * 119.99834 * 119.99517 * 5 3 2 7 7 C 1.37877 * 120.00423 * 300.00347 * 5 3 2 8 8 N 1.31510 * 119.99576 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00281 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47166 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47452 * 119.99812 * 9 7 5 12 12 H 1.48498 * 109.47195 * 239.99870 * 9 7 5 13 13 N 1.46500 * 109.47170 * 294.99688 * 3 2 1 14 14 C 1.34785 * 119.99980 * 84.99927 * 13 3 2 15 15 O 1.21283 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99773 * 180.02562 * 14 13 3 17 17 H 1.08996 * 109.30075 * 320.41704 * 16 14 13 18 18 C 1.52920 * 109.30110 * 80.00172 * 16 14 13 19 19 C 1.53342 * 108.67601 * 171.06036 * 18 16 14 20 20 C 1.53074 * 108.42764 * 292.47261 * 19 18 16 21 21 C 1.50177 * 109.88912 * 48.89624 * 20 19 18 22 22 O 1.21288 * 118.24185 * 162.44051 * 21 20 19 23 23 N 1.33347 * 123.51146 * 342.41910 * 21 20 19 24 24 C 1.46502 * 117.94673 * 182.22063 * 23 21 20 25 25 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 29 29 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 30 30 H 0.97002 * 120.00364 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00116 * 265.00375 * 13 3 2 32 32 H 1.09001 * 109.60425 * 290.81833 * 18 16 14 33 33 H 1.09003 * 109.60476 * 51.30874 * 18 16 14 34 34 H 1.09005 * 109.67427 * 52.20020 * 19 18 16 35 35 H 1.08996 * 109.67809 * 172.69641 * 19 18 16 36 36 H 1.09002 * 109.40026 * 169.02542 * 20 19 18 37 37 H 1.08996 * 109.39938 * 288.76944 * 20 19 18 38 38 H 1.08998 * 109.47173 * 269.99954 * 24 23 21 39 39 H 1.09004 * 109.47186 * 30.00613 * 24 23 21 40 40 H 1.09001 * 109.46959 * 150.00361 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8801 1.3813 10 1 6.5988 1.5442 0.1933 11 1 6.3999 1.6157 2.6093 12 1 6.4962 -0.5189 1.4629 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.8900 3.8850 -3.0546 18 6 -0.4016 2.2766 -3.6654 19 6 -1.0130 2.9806 -4.8827 20 6 -2.3229 3.6443 -4.4504 21 6 -2.1031 4.4389 -3.1952 22 8 -2.9270 5.2767 -2.8946 23 7 -1.0508 4.2725 -2.3933 24 6 -0.9831 5.0800 -1.1728 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8292 -0.0610 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 0.4626 1.6903 -3.9778 33 1 -1.1450 1.6224 -3.2097 34 1 -0.3227 3.7383 -5.2535 35 1 -1.2123 2.2505 -5.6671 36 1 -2.6714 4.3073 -5.2423 37 1 -3.0742 2.8765 -4.2660 38 1 -0.4598 6.0127 -1.3828 39 1 -1.9929 5.2999 -0.8262 40 1 -0.4463 4.5280 -0.4012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907388039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = -97.451316 kcal Electronic energy + Delta-G solvation = -21681.068421 eV Core-core repulsion = 18494.713024 eV Total energy + Delta-G solvation = -3186.355397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00596 -40.34817 -37.57595 -36.75773 -34.97768 -34.27151 -32.92018 -30.98156 -28.85467 -28.09800 -26.11961 -24.85026 -23.20120 -22.28086 -21.17420 -19.69016 -19.12098 -17.74681 -17.65926 -17.52686 -17.04995 -16.49558 -16.07823 -15.80107 -15.22014 -15.01709 -14.81550 -14.57165 -14.35906 -13.96392 -13.58349 -13.43096 -13.17996 -13.15155 -12.85073 -12.74275 -12.65059 -12.49388 -12.12665 -12.04946 -11.93046 -11.81422 -11.54073 -11.07470 -11.00136 -10.59401 -10.50180 -9.82751 -9.52030 -8.14544 -6.31416 1.45421 1.47406 1.52818 1.58401 1.64606 2.00238 2.37069 2.60163 3.15884 3.51981 3.70201 3.79192 3.88715 4.12911 4.25036 4.39074 4.50890 4.55429 4.58466 4.60818 4.77529 4.81422 4.87763 4.91340 4.98261 5.06399 5.08564 5.26498 5.27300 5.33548 5.45186 5.58111 5.63494 5.81380 5.93709 6.19330 6.39710 6.77446 6.94189 7.08982 7.35568 7.55923 8.90681 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031007 B = 0.004800 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.794237 B = 5831.802590 C = 5853.164532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.543 4.543 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.281 1.281 13 N -0.694 5.694 14 C 0.490 3.510 15 O -0.574 6.574 16 C 0.129 3.871 17 H 0.124 0.876 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.129 4.129 21 C 0.507 3.493 22 O -0.605 6.605 23 N -0.585 5.585 24 C 0.069 3.931 25 H 0.043 0.957 26 H 0.020 0.980 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.407 0.593 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 2.469 -16.398 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.581 4.581 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.182 1.182 11 H -0.215 1.215 12 H -0.207 1.207 13 N -0.344 5.344 14 C 0.276 3.724 15 O -0.454 6.454 16 C 0.022 3.978 17 H 0.141 0.859 18 C -0.163 4.163 19 C -0.146 4.146 20 C -0.169 4.169 21 C 0.298 3.702 22 O -0.487 6.487 23 N -0.316 5.316 24 C -0.074 4.074 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.243 0.757 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.324 2.760 -15.423 16.253 hybrid contribution 1.002 -0.005 0.926 1.365 sum -3.322 2.755 -14.496 15.125 Atomic orbital electron populations 1.21675 0.97124 0.98998 1.00180 1.21772 0.93515 0.99171 1.01431 1.18357 0.93575 0.89154 0.81315 0.98530 1.21611 0.91417 1.38555 1.06558 0.90702 1.25730 1.02990 0.94529 0.95160 1.70056 1.36925 1.38564 1.09928 0.85372 0.79542 0.77696 0.78168 1.18186 1.21458 1.20686 1.46206 1.15066 1.55467 1.17619 1.21158 0.82142 0.79195 0.89919 1.90671 1.52364 1.60168 1.42245 1.21211 0.91306 0.91995 0.93328 0.85855 1.21954 1.03680 0.96090 0.94580 1.21672 0.94823 1.01018 0.97067 1.21750 1.01402 1.00426 0.93288 1.21092 0.79236 0.83387 0.86495 1.90672 1.44433 1.38073 1.75542 1.47051 1.22334 1.39069 1.23146 1.21869 1.02739 0.95130 0.87660 0.93844 0.96086 0.93372 0.91373 0.93528 0.92752 0.75741 0.86352 0.91795 0.89300 0.86823 0.86506 0.87456 0.91944 0.92466 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.52 71.98 0.61 -4.60 16 2 C -0.12 -5.53 5.45 30.60 0.17 -5.36 16 3 C 0.28 13.26 2.24 44.24 0.10 13.36 16 4 H 0.00 -0.18 7.58 -2.38 -0.02 -0.20 16 5 C -0.54 -26.85 8.73 25.60 0.22 -26.63 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -50.88 11.29 21.45 0.24 -50.64 16 9 Si 0.97 40.41 29.54 68.60 2.03 42.44 16 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.69 -24.82 5.02 -446.09 -2.24 -27.06 16 14 C 0.49 16.89 4.78 87.65 0.42 17.31 16 15 O -0.57 -25.07 11.24 -3.04 -0.03 -25.11 16 16 C 0.13 3.11 3.14 44.36 0.14 3.25 16 17 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.13 -2.12 5.29 30.68 0.16 -1.96 16 19 C -0.11 -1.23 6.03 30.73 0.19 -1.05 16 20 C -0.13 -2.23 6.03 29.71 0.18 -2.05 16 21 C 0.51 14.59 7.47 87.72 0.66 15.24 16 22 O -0.60 -22.54 16.21 -3.05 -0.05 -22.59 16 23 N -0.59 -17.09 2.96 -831.52 -2.46 -19.55 16 24 C 0.07 2.29 9.59 127.77 1.23 3.51 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.02 0.97 7.85 -2.39 -0.02 0.96 16 27 H 0.05 1.92 5.65 -2.39 -0.01 1.91 16 28 H 0.07 3.61 5.95 -2.39 -0.01 3.60 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.41 11.62 8.54 -92.71 -0.79 10.82 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.09 0.82 8.13 -2.38 -0.02 0.80 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.06 7.20 -2.39 -0.02 2.05 16 40 H 0.08 2.92 5.01 -2.39 -0.01 2.91 16 Total: -1.00 -70.47 315.33 2.25 -68.23 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.25 Total: 21.99 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 4.52 Total: 12.29 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -4.46 Total: -97.25 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.08 Total: -47.69 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -70.47 2.25 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907388039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.226 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds