Wall clock time and date at job start Mon Mar 30 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46743 * 2 1 4 4 H 1.09000 * 109.47067 * 305.77241 * 3 2 1 5 5 C 1.50702 * 109.46992 * 185.77999 * 3 2 1 6 6 H 1.08005 * 119.99500 * 335.21157 * 5 3 2 7 7 C 1.37870 * 120.00171 * 155.21308 * 5 3 2 8 8 N 1.31512 * 120.00272 * 355.34540 * 7 5 3 9 9 Si 1.86803 * 119.99721 * 175.33631 * 7 5 3 10 10 H 1.48499 * 109.47375 * 60.00511 * 9 7 5 11 11 H 1.48504 * 109.47264 * 300.00086 * 9 7 5 12 12 H 1.48502 * 109.46942 * 180.02562 * 9 7 5 13 13 N 1.46496 * 109.47596 * 65.77703 * 3 2 1 14 14 C 1.34775 * 119.99762 * 274.99994 * 13 3 2 15 15 O 1.21277 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99633 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.29575 * 40.42323 * 16 14 13 18 18 C 1.52912 * 109.30255 * 281.03738 * 16 14 13 19 19 C 1.53352 * 108.67332 * 188.93704 * 18 16 14 20 20 C 1.53065 * 108.42411 * 67.52889 * 19 18 16 21 21 C 1.50171 * 109.89426 * 311.09713 * 20 19 18 22 22 O 1.21282 * 118.24956 * 197.56046 * 21 20 19 23 23 N 1.33355 * 123.50903 * 17.58735 * 21 20 19 24 24 C 1.46497 * 117.94844 * 177.74767 * 23 21 20 25 25 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47129 * 299.99615 * 1 2 3 27 27 H 1.09000 * 109.47481 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.46792 * 240.00370 * 2 1 3 29 29 H 1.09000 * 109.47007 * 119.99728 * 2 1 3 30 30 H 0.96997 * 119.99766 * 5.26039 * 8 7 5 31 31 H 0.97001 * 120.00100 * 94.99272 * 13 3 2 32 32 H 1.08997 * 109.60552 * 308.68667 * 18 16 14 33 33 H 1.09002 * 109.60461 * 69.18320 * 18 16 14 34 34 H 1.08998 * 109.67146 * 307.79475 * 19 18 16 35 35 H 1.08995 * 109.70361 * 187.28399 * 19 18 16 36 36 H 1.09008 * 109.40061 * 190.96987 * 20 19 18 37 37 H 1.08998 * 109.40127 * 71.23427 * 20 19 18 38 38 H 1.08995 * 109.47290 * 270.01733 * 24 23 21 39 39 H 1.09002 * 109.46701 * 30.02796 * 24 23 21 40 40 H 1.09007 * 109.46749 * 150.01916 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5946 1.9853 -0.8338 5 6 3.5402 1.4450 -0.1431 6 1 4.1136 0.5840 0.1673 7 6 4.1806 2.5463 -0.6702 8 7 3.4776 3.5571 -1.1325 9 14 6.0469 2.6028 -0.7274 10 1 6.5517 1.4696 -1.5437 11 1 6.5878 2.4991 0.6517 12 1 6.4848 3.8849 -1.3353 13 7 1.6685 2.0919 1.2595 14 6 0.4527 2.6582 1.3927 15 8 -0.3335 2.6306 0.4698 16 6 0.0704 3.3257 2.6887 17 1 0.9246 3.8837 3.0722 18 6 -0.3299 2.2585 3.7081 19 6 -0.9268 2.9536 4.9378 20 6 -2.2554 3.5966 4.5328 21 6 -2.0743 4.3940 3.2733 22 8 -2.9172 5.2187 2.9897 23 7 -1.0364 4.2436 2.4495 24 6 -1.0070 5.0510 1.2275 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5127 3.5621 -1.0338 31 1 2.2974 2.1142 1.9977 32 1 -1.0723 1.5927 3.2681 33 1 0.5496 1.6859 4.0026 34 1 -0.2407 3.7220 5.2940 35 1 -1.0988 2.2212 5.7265 36 1 -2.5978 4.2544 5.3317 37 1 -2.9984 2.8171 4.3642 38 1 -1.5055 4.5105 0.4229 39 1 -1.5213 5.9957 1.4039 40 1 0.0277 5.2474 0.9467 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907388040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:01 Heat of formation + Delta-G solvation = -109.572723 kcal Electronic energy + Delta-G solvation = -21902.180872 eV Core-core repulsion = 18715.299852 eV Total energy + Delta-G solvation = -3186.881020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99813 -40.36080 -37.66653 -36.78780 -35.03093 -34.21130 -33.28512 -30.94483 -28.54513 -28.14983 -26.09973 -24.92892 -23.24870 -22.36490 -21.27520 -19.80186 -19.32589 -18.12902 -17.66875 -17.56305 -16.82497 -16.23059 -16.02840 -15.60457 -15.34730 -15.22315 -14.88768 -14.72418 -14.44834 -14.24724 -13.88658 -13.58235 -13.21874 -13.00102 -12.83081 -12.61326 -12.57868 -12.49061 -12.15117 -11.99621 -11.93029 -11.84646 -11.59546 -11.16297 -10.96410 -10.56230 -10.51162 -9.81850 -9.51944 -8.67071 -6.48737 1.48400 1.58618 1.61590 1.67586 1.83307 1.97363 2.48228 2.57692 3.24574 3.47180 3.66578 3.78359 3.84230 4.10011 4.19393 4.26988 4.28145 4.34541 4.49673 4.54594 4.56524 4.76269 4.82498 4.83007 4.92142 4.93200 5.00198 5.07790 5.17620 5.20850 5.26173 5.31302 5.49797 5.77601 6.00515 6.15239 6.35693 6.49069 6.95344 7.05609 7.39849 7.52761 8.68318 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.005688 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.670297 B = 4921.235521 C = 5205.088262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C 0.247 3.753 4 H 0.005 0.995 5 C -0.611 4.611 6 H 0.063 0.937 7 C -0.015 4.015 8 N -0.922 5.922 9 Si 1.115 2.885 10 H -0.273 1.273 11 H -0.260 1.260 12 H -0.294 1.294 13 N -0.694 5.694 14 C 0.486 3.514 15 O -0.580 6.580 16 C 0.124 3.876 17 H 0.110 0.890 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.128 4.128 21 C 0.507 3.493 22 O -0.604 6.604 23 N -0.585 5.585 24 C 0.092 3.908 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.258 0.742 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -4.104 14.974 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.150 4.150 3 C 0.145 3.855 4 H 0.023 0.977 5 C -0.650 4.650 6 H 0.081 0.919 7 C -0.217 4.217 8 N -0.558 5.558 9 Si 0.937 3.063 10 H -0.198 1.198 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.343 5.343 14 C 0.271 3.729 15 O -0.461 6.461 16 C 0.017 3.983 17 H 0.128 0.872 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.167 4.167 21 C 0.298 3.702 22 O -0.487 6.487 23 N -0.316 5.316 24 C -0.051 4.051 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.242 -2.846 13.651 14.316 hybrid contribution -1.178 -0.532 -0.150 1.301 sum -4.420 -3.377 13.501 14.602 Atomic orbital electron populations 1.21704 0.96111 0.99949 1.00797 1.21730 0.94892 0.97277 1.01077 1.18629 0.94172 0.89742 0.82927 0.97713 1.22372 0.91967 1.04013 1.46629 0.91886 1.27350 1.10880 0.92182 0.91325 1.70907 1.08580 1.34090 1.42180 0.82956 0.69215 0.76083 0.78047 1.19842 1.18427 1.21998 1.47141 1.14053 1.55472 1.17683 1.21233 0.82651 0.79291 0.89699 1.90657 1.51807 1.60738 1.42860 1.21251 0.90456 0.92467 0.94118 0.87228 1.21925 1.03811 0.95867 0.94309 1.21679 0.94671 1.01214 0.97100 1.21746 1.01347 1.00485 0.93101 1.21137 0.79440 0.83291 0.86366 1.90666 1.42632 1.38586 1.76802 1.47049 1.22362 1.39768 1.22394 1.21487 1.01457 0.95371 0.86807 0.92426 0.93349 0.95723 0.93079 0.91582 0.93183 0.76592 0.91461 0.86601 0.89716 0.86504 0.86384 0.87131 0.93508 0.90974 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.53 71.98 0.61 -4.24 16 2 C -0.11 -4.45 5.58 30.60 0.17 -4.28 16 3 C 0.25 11.51 1.95 44.25 0.09 11.60 16 4 H 0.00 0.28 6.12 -2.39 -0.01 0.26 16 5 C -0.61 -30.36 8.50 25.60 0.22 -30.14 16 6 H 0.06 3.01 7.81 -2.91 -0.02 2.98 16 7 C -0.02 -0.81 5.45 84.65 0.46 -0.34 16 8 N -0.92 -53.54 13.62 21.44 0.29 -53.24 16 9 Si 1.12 45.43 29.91 68.60 2.05 47.48 16 10 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.69 -26.88 5.03 -446.10 -2.24 -29.12 16 14 C 0.49 18.23 4.92 87.66 0.43 18.66 16 15 O -0.58 -26.47 11.47 -3.02 -0.03 -26.50 16 16 C 0.12 3.46 3.08 44.36 0.14 3.60 16 17 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 18 C -0.12 -2.29 5.29 30.68 0.16 -2.12 16 19 C -0.11 -1.43 6.03 30.73 0.19 -1.24 16 20 C -0.13 -2.36 6.03 29.70 0.18 -2.18 16 21 C 0.51 15.55 7.47 87.71 0.66 16.21 16 22 O -0.60 -23.49 16.18 -3.04 -0.05 -23.54 16 23 N -0.58 -18.86 2.96 -831.52 -2.46 -21.33 16 24 C 0.09 3.42 8.69 127.77 1.11 4.53 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.83 5.63 -2.38 -0.01 1.81 16 27 H 0.02 1.03 7.89 -2.39 -0.02 1.01 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.26 15.67 6.66 -92.71 -0.62 15.05 16 31 H 0.40 13.48 8.59 -92.71 -0.80 12.68 16 32 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.96 6.95 -2.39 -0.02 1.94 16 39 H 0.07 2.60 7.13 -2.39 -0.02 2.59 16 40 H 0.06 2.17 7.75 -2.38 -0.02 2.15 16 Total: -1.00 -71.03 317.92 2.35 -68.68 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.39 Total: 27.53 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.41 Total: 10.05 kcal Atomic # 7 Polarization: -99.28 SS G_CDS: -4.41 Total: -103.69 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.08 Total: -50.04 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.05 Total: 47.48 kcal Total: -71.03 2.35 -68.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907388040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.897 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds