Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09001 * 110.43483 * 52.45678 * 3 2 1 5 5 C 1.54808 * 110.48804 * 289.77132 * 3 2 1 6 6 C 1.55000 * 102.09115 * 220.44257 * 5 3 2 7 7 O 1.44382 * 103.49143 * 37.02161 * 6 5 3 8 8 C 1.43743 * 106.97314 * 319.94343 * 7 6 5 9 9 H 1.08999 * 109.87600 * 267.08142 * 8 7 6 10 10 C 1.50700 * 110.00320 * 146.00600 * 8 7 6 11 11 O 1.21279 * 120.00089 * 357.09187 * 10 8 7 12 12 N 1.34777 * 119.99971 * 177.08992 * 10 8 7 13 13 C 1.46502 * 119.99927 * 180.02562 * 12 10 8 14 14 C 1.53943 * 113.74066 * 253.73801 * 13 12 10 15 15 N 1.47815 * 86.03893 * 222.08526 * 14 13 12 16 16 C 1.36935 * 134.45955 * 204.64488 * 15 14 13 17 17 H 1.07994 * 120.00188 * 179.86886 * 16 15 14 18 18 C 1.38817 * 119.99910 * 359.86569 * 16 15 14 19 19 N 1.31619 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47224 * 120.00187 * 20 18 16 23 23 H 1.48501 * 109.47372 * 240.00446 * 20 18 16 24 24 C 1.47577 * 91.04878 * 24.55258 * 15 14 13 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 1.08997 * 110.90690 * 338.63903 * 5 3 2 31 31 H 1.08996 * 110.91193 * 102.24524 * 5 3 2 32 32 H 1.08996 * 110.61978 * 278.52388 * 6 5 3 33 33 H 1.08995 * 110.61808 * 155.52477 * 6 5 3 34 34 H 0.97004 * 120.00080 * 0.02562 * 12 10 8 35 35 H 1.08995 * 112.94711 * 25.33176 * 13 12 10 36 36 H 1.08997 * 113.77227 * 336.35510 * 14 13 12 37 37 H 1.09003 * 113.76744 * 107.74799 * 14 13 12 38 38 H 0.97001 * 120.00204 * 179.97438 * 19 18 16 39 39 H 1.09002 * 113.76865 * 221.14865 * 24 15 14 40 40 H 1.08999 * 113.77398 * 89.75771 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0087 0.8099 5 6 1.7582 2.1168 -1.3647 6 6 3.0603 2.9231 -1.6035 7 8 4.0921 2.0593 -1.0801 8 6 3.5756 1.4716 0.1257 9 1 3.8657 2.0751 0.9858 10 6 4.1036 0.0689 0.2828 11 8 4.8091 -0.4133 -0.5778 12 7 3.7919 -0.6496 1.3796 13 6 4.3056 -2.0130 1.5325 14 6 3.2416 -3.1042 1.3159 15 7 3.8429 -3.7787 2.4858 16 6 3.8979 -5.0757 2.9216 17 1 4.4176 -5.3161 3.8372 18 6 3.2858 -6.0815 2.1864 19 7 2.6528 -5.7886 1.0701 20 14 3.3615 -7.8509 2.7804 21 1 4.1267 -7.9139 4.0514 22 1 1.9837 -8.3563 3.0071 23 1 4.0338 -8.6889 1.7553 24 6 4.3617 -2.4940 2.9939 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6145 1.3699 -2.1453 31 1 0.8961 2.7806 -1.2999 32 1 3.0343 3.8652 -1.0561 33 1 3.2119 3.1007 -2.6682 34 1 3.2273 -0.2640 2.0678 35 1 5.2286 -2.1840 0.9785 36 1 2.2205 -2.7616 1.4832 37 1 3.3596 -3.6537 0.3819 38 1 2.2253 -6.4915 0.5562 39 1 5.3724 -2.5570 3.3972 40 1 3.6704 -1.9716 3.6552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030471463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -21.927462 kcal Electronic energy + Delta-G solvation = -21408.567932 eV Core-core repulsion = 18225.487495 eV Total energy + Delta-G solvation = -3183.080437 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.64166 -38.66702 -37.20545 -34.98546 -33.31722 -31.83664 -30.41849 -29.45069 -27.30532 -24.85049 -24.17729 -23.27224 -22.48859 -21.13120 -19.95643 -19.31160 -16.94082 -16.85838 -16.70739 -16.15053 -15.21192 -14.95446 -14.80001 -14.61982 -14.23835 -13.79408 -13.48077 -13.35509 -12.75024 -12.57574 -12.16211 -11.94036 -11.69143 -11.46862 -11.43910 -11.36574 -11.17255 -10.90586 -10.83969 -10.72698 -10.71419 -10.27407 -10.03889 -10.00011 -9.55924 -9.20523 -8.82458 -8.35187 -6.93023 -5.78600 -3.12470 2.88944 3.16093 3.38894 3.43861 3.46654 3.99598 4.28483 4.44076 4.53178 4.68982 4.90017 5.00922 5.13572 5.15348 5.26965 5.34940 5.39350 5.47047 5.49178 5.56017 5.57224 5.71553 5.77492 5.92563 6.00714 6.17228 6.17886 6.20175 6.36204 6.39820 6.55096 6.67388 6.75731 7.22793 7.36152 7.55541 7.86017 7.95443 8.56369 9.01702 9.68026 10.54337 11.38185 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032018 B = 0.004541 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.300356 B = 6164.429420 C = 6567.289392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C -0.111 4.111 4 H 0.091 0.909 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.060 3.940 9 H 0.090 0.910 10 C 0.516 3.484 11 O -0.522 6.522 12 N -0.715 5.715 13 C 0.092 3.908 14 C 0.156 3.844 15 N -0.607 5.607 16 C -0.225 4.225 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.112 3.888 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.396 0.604 35 H 0.110 0.890 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.049 0.951 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 18.438 -1.131 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.130 4.130 4 H 0.109 0.891 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.301 3.699 11 O -0.397 6.397 12 N -0.369 5.369 13 C -0.013 4.013 14 C 0.029 3.971 15 N -0.333 5.333 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.015 4.015 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.232 0.768 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.347 17.679 -1.871 18.090 hybrid contribution -0.664 -0.682 0.782 1.232 sum -4.011 16.997 -1.088 17.498 Atomic orbital electron populations 1.21733 0.95374 1.02201 1.01154 1.22137 0.96577 0.94323 1.04783 1.22569 0.93057 0.98648 0.98751 0.89090 1.23236 0.98317 0.99830 0.97208 1.23617 0.86564 0.93145 1.00003 1.89010 1.37540 1.61004 1.38954 1.22776 0.93862 0.93231 0.90279 0.89198 1.20223 0.80519 0.86770 0.82390 1.90719 1.36787 1.71383 1.40776 1.46308 1.52380 1.16385 1.21828 1.23920 1.00283 0.78798 0.98259 1.22707 0.92780 0.88069 0.93513 1.45717 1.62228 1.00587 1.24811 1.19030 1.29596 0.80662 1.05995 0.90004 1.24810 0.99987 0.98125 0.97333 1.69838 1.39301 1.31671 1.15654 0.86029 0.77253 0.84496 0.77863 1.20401 1.21720 1.21595 1.22877 0.97610 0.87735 0.93247 0.92922 0.93123 0.92144 0.89222 0.91143 0.89975 0.90021 0.92089 0.88736 0.76849 0.87208 0.95308 0.90568 0.93582 0.93240 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.79 37.16 0.36 -1.21 16 2 C -0.14 -1.73 4.15 -26.73 -0.11 -1.84 16 3 C -0.11 -1.12 3.04 -89.10 -0.27 -1.39 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -1.35 6.03 -24.72 -0.15 -1.50 16 6 C 0.04 0.42 7.72 38.21 0.29 0.72 16 7 O -0.35 -5.01 10.75 -54.73 -0.59 -5.59 16 8 C 0.06 0.76 3.84 -27.31 -0.10 0.65 16 9 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 10 C 0.52 8.50 5.69 -10.99 -0.06 8.44 16 11 O -0.52 -11.22 16.16 -13.94 -0.23 -11.45 16 12 N -0.71 -10.86 3.56 -55.33 -0.20 -11.06 16 13 C 0.09 1.79 4.40 -70.14 -0.31 1.48 16 14 C 0.16 3.68 7.33 -2.84 -0.02 3.66 16 15 N -0.61 -15.48 3.70 -177.86 -0.66 -16.13 16 16 C -0.23 -6.32 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -27.43 11.39 55.49 0.63 -26.80 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 C 0.11 2.22 8.69 -2.97 -0.03 2.19 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.48 7.62 -51.93 -0.40 0.08 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.19 4.61 -51.93 -0.24 0.95 16 29 H 0.07 1.07 7.70 -51.93 -0.40 0.67 16 30 H 0.08 0.85 7.77 -51.93 -0.40 0.44 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 4.75 7.76 -40.82 -0.32 4.43 16 35 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 36 H 0.03 0.68 7.94 -51.93 -0.41 0.26 16 37 H 0.08 2.08 7.16 -51.93 -0.37 1.71 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -34.17 320.77 -8.16 -42.33 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.28 Total: 2.26 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.65 Total: 4.46 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.22 Total: -53.99 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.81 Total: -17.04 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.17 -8.16 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030471463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.402 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds