Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09001 * 110.43483 * 52.45678 * 3 2 1 5 5 C 1.54808 * 110.48804 * 289.77132 * 3 2 1 6 6 C 1.55000 * 102.09115 * 220.44257 * 5 3 2 7 7 O 1.44382 * 103.49143 * 37.02161 * 6 5 3 8 8 C 1.43743 * 106.97314 * 319.94343 * 7 6 5 9 9 H 1.08999 * 109.87600 * 267.08142 * 8 7 6 10 10 C 1.50700 * 110.00320 * 146.00600 * 8 7 6 11 11 O 1.21279 * 120.00089 * 357.09187 * 10 8 7 12 12 N 1.34777 * 119.99971 * 177.08992 * 10 8 7 13 13 C 1.46502 * 119.99927 * 180.02562 * 12 10 8 14 14 C 1.53943 * 113.74066 * 253.73801 * 13 12 10 15 15 N 1.47815 * 86.03893 * 222.08526 * 14 13 12 16 16 C 1.36935 * 134.45955 * 204.64488 * 15 14 13 17 17 H 1.07994 * 120.00188 * 179.86886 * 16 15 14 18 18 C 1.38817 * 119.99910 * 359.86569 * 16 15 14 19 19 N 1.31619 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00162 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47224 * 120.00187 * 20 18 16 23 23 H 1.48501 * 109.47372 * 240.00446 * 20 18 16 24 24 C 1.47577 * 91.04878 * 24.55258 * 15 14 13 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 29 29 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 30 30 H 1.08997 * 110.90690 * 338.63903 * 5 3 2 31 31 H 1.08996 * 110.91193 * 102.24524 * 5 3 2 32 32 H 1.08996 * 110.61978 * 278.52388 * 6 5 3 33 33 H 1.08995 * 110.61808 * 155.52477 * 6 5 3 34 34 H 0.97004 * 120.00080 * 0.02562 * 12 10 8 35 35 H 1.08995 * 112.94711 * 25.33176 * 13 12 10 36 36 H 1.08997 * 113.77227 * 336.35510 * 14 13 12 37 37 H 1.09003 * 113.76744 * 107.74799 * 14 13 12 38 38 H 0.97001 * 120.00204 * 179.97438 * 19 18 16 39 39 H 1.09002 * 113.76865 * 221.14865 * 24 15 14 40 40 H 1.08999 * 113.77398 * 89.75771 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0087 0.8099 5 6 1.7582 2.1168 -1.3647 6 6 3.0603 2.9231 -1.6035 7 8 4.0921 2.0593 -1.0801 8 6 3.5756 1.4716 0.1257 9 1 3.8657 2.0751 0.9858 10 6 4.1036 0.0689 0.2828 11 8 4.8091 -0.4133 -0.5778 12 7 3.7919 -0.6496 1.3796 13 6 4.3056 -2.0130 1.5325 14 6 3.2416 -3.1042 1.3159 15 7 3.8429 -3.7787 2.4858 16 6 3.8979 -5.0757 2.9216 17 1 4.4176 -5.3161 3.8372 18 6 3.2858 -6.0815 2.1864 19 7 2.6528 -5.7886 1.0701 20 14 3.3615 -7.8509 2.7804 21 1 4.1267 -7.9139 4.0514 22 1 1.9837 -8.3563 3.0071 23 1 4.0338 -8.6889 1.7553 24 6 4.3617 -2.4940 2.9939 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6145 1.3699 -2.1453 31 1 0.8961 2.7806 -1.2999 32 1 3.0343 3.8652 -1.0561 33 1 3.2119 3.1007 -2.6682 34 1 3.2273 -0.2640 2.0678 35 1 5.2286 -2.1840 0.9785 36 1 2.2205 -2.7616 1.4832 37 1 3.3596 -3.6537 0.3819 38 1 2.2253 -6.4915 0.5562 39 1 5.3724 -2.5570 3.3972 40 1 3.6704 -1.9716 3.6552 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030471463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -45.733426 kcal Electronic energy + Delta-G solvation = -21409.600236 eV Core-core repulsion = 18225.487495 eV Total energy + Delta-G solvation = -3184.112741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79209 -40.05558 -38.75439 -36.06418 -34.88517 -33.71162 -31.26273 -30.57707 -29.13977 -26.63700 -25.51764 -24.53431 -23.56769 -22.26027 -21.44282 -20.69652 -18.78488 -18.08439 -17.73008 -17.48499 -16.97303 -16.32947 -15.99229 -15.82145 -15.55698 -15.29869 -14.64479 -14.55183 -14.35383 -13.68142 -13.55689 -13.30351 -13.20923 -13.01809 -12.84013 -12.68031 -12.55098 -12.38050 -12.10404 -12.05437 -11.91210 -11.60044 -11.57628 -11.44936 -11.05131 -10.90794 -10.43602 -9.85090 -8.98004 -7.92998 -5.28225 1.44909 1.46783 1.57014 1.59464 1.94536 2.47329 3.06494 3.24751 3.36176 3.43399 3.66956 3.76249 3.83148 4.02715 4.23943 4.30953 4.32403 4.43726 4.50471 4.51403 4.55663 4.73802 4.76907 4.84615 4.88042 4.91489 5.01704 5.14013 5.16421 5.22788 5.26699 5.28110 5.42805 5.47854 5.67530 5.85626 5.89030 6.59807 6.87307 7.28476 7.57356 8.50104 9.24056 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032018 B = 0.004541 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.300356 B = 6164.429420 C = 6567.289392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.102 4.102 4 H 0.135 0.865 5 C -0.145 4.145 6 C 0.038 3.962 7 O -0.388 6.388 8 C 0.064 3.936 9 H 0.129 0.871 10 C 0.512 3.488 11 O -0.582 6.582 12 N -0.696 5.696 13 C 0.118 3.882 14 C 0.157 3.843 15 N -0.639 5.639 16 C -0.234 4.234 17 H 0.091 0.909 18 C -0.069 4.069 19 N -0.956 5.956 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.291 1.291 23 H -0.295 1.295 24 C 0.124 3.876 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.418 0.582 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.027 0.973 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 21.052 0.988 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C -0.121 4.121 4 H 0.153 0.847 5 C -0.183 4.183 6 C -0.037 4.037 7 O -0.307 6.307 8 C 0.003 3.997 9 H 0.147 0.853 10 C 0.299 3.701 11 O -0.461 6.461 12 N -0.351 5.351 13 C 0.012 3.988 14 C 0.031 3.969 15 N -0.366 5.366 16 C -0.362 4.362 17 H 0.109 0.891 18 C -0.261 4.261 19 N -0.605 5.605 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.218 1.218 23 H -0.222 1.222 24 C -0.001 4.001 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.257 0.743 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.200 20.357 0.303 20.788 hybrid contribution -0.386 -1.429 0.081 1.482 sum -4.586 18.928 0.385 19.479 Atomic orbital electron populations 1.21699 0.93882 1.01364 1.03038 1.22057 0.97899 0.95733 1.02029 1.22641 0.91217 0.97315 1.00923 0.84737 1.23250 0.99462 0.99726 0.95836 1.23895 0.85485 0.93623 1.00730 1.88978 1.39758 1.62060 1.39896 1.22942 0.95158 0.90324 0.91258 0.85340 1.21166 0.79237 0.88437 0.81212 1.90694 1.39582 1.73024 1.42767 1.45990 1.52177 1.14514 1.22430 1.23162 0.97573 0.80141 0.97961 1.22544 0.94025 0.89139 0.91220 1.46046 1.62866 1.01674 1.26036 1.19480 1.28624 0.82173 1.05914 0.89099 1.25700 1.00410 1.02359 0.97674 1.70051 1.40825 1.32479 1.17118 0.84963 0.77092 0.79231 0.77754 1.18439 1.21773 1.22228 1.23022 0.98804 0.84980 0.93341 0.90378 0.91800 0.94429 0.90490 0.95423 0.92230 0.86542 0.88943 0.88400 0.74327 0.89751 0.95152 0.95488 0.94325 0.91811 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.79 71.98 0.70 -2.10 16 2 C -0.14 -3.32 4.15 30.60 0.13 -3.19 16 3 C -0.10 -1.73 3.04 -9.81 -0.03 -1.76 16 4 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.15 -2.23 6.03 31.90 0.19 -2.03 16 6 C 0.04 0.64 7.72 72.67 0.56 1.20 16 7 O -0.39 -10.66 10.75 -130.33 -1.40 -12.06 16 8 C 0.06 1.46 3.84 30.22 0.12 1.58 16 9 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 10 C 0.51 16.80 5.69 87.66 0.50 17.30 16 11 O -0.58 -26.16 16.16 15.62 0.25 -25.91 16 12 N -0.70 -20.54 3.56 -447.37 -1.59 -22.13 16 13 C 0.12 4.64 4.40 46.75 0.21 4.85 16 14 C 0.16 7.75 7.33 86.44 0.63 8.38 16 15 N -0.64 -32.88 3.70 -716.64 -2.65 -35.53 16 16 C -0.23 -13.17 10.70 84.03 0.90 -12.27 16 17 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 18 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 19 N -0.96 -59.49 11.39 21.65 0.25 -59.24 16 20 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 C 0.12 4.70 8.69 86.49 0.75 5.45 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.08 7.62 -2.39 -0.02 1.06 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.98 4.61 -2.39 -0.01 1.97 16 29 H 0.03 0.88 7.70 -2.39 -0.02 0.86 16 30 H 0.06 1.19 7.77 -2.39 -0.02 1.17 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.42 8.86 7.76 -92.71 -0.72 8.14 16 35 H 0.08 3.81 7.51 -2.39 -0.02 3.79 16 36 H 0.03 1.47 7.94 -2.39 -0.02 1.45 16 37 H 0.03 1.57 7.16 -2.39 -0.02 1.56 16 38 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 Total: -1.00 -79.79 320.77 2.32 -77.47 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.31 Total: 15.24 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.13 Total: 13.88 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.00 Total: -116.91 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.15 Total: -37.97 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -79.79 2.32 -77.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030471463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.736 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds