Wall clock time and date at job start Mon Mar 30 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 H 1.08997 * 110.35136 * 55.69455 * 3 2 1 5 5 O 1.43641 * 110.30914 * 293.55274 * 3 2 1 6 6 C 1.43245 * 109.97106 * 216.65334 * 5 3 2 7 7 C 1.54377 * 107.58529 * 1.71442 * 6 5 3 8 8 C 1.54940 * 110.31180 * 177.83927 * 3 2 1 9 9 H 1.09007 * 111.12756 * 37.44000 * 8 3 2 10 10 C 1.50703 * 111.16345 * 273.29579 * 8 3 2 11 11 O 1.21290 * 119.99735 * 6.96855 * 10 8 3 12 12 N 1.34773 * 120.00431 * 186.96467 * 10 8 3 13 13 C 1.46494 * 120.00285 * 179.97438 * 12 10 8 14 14 C 1.53948 * 113.74528 * 251.68074 * 13 12 10 15 15 N 1.47582 * 86.11578 * 222.04569 * 14 13 12 16 16 C 1.36944 * 134.49267 * 204.63679 * 15 14 13 17 17 H 1.08002 * 119.99864 * 179.97438 * 16 15 14 18 18 C 1.38808 * 119.99813 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00384 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46830 * 90.00285 * 20 18 16 22 22 H 1.48497 * 109.47038 * 210.00239 * 20 18 16 23 23 H 1.48502 * 109.47029 * 330.00147 * 20 18 16 24 24 C 1.47585 * 91.01591 * 24.63859 * 15 14 13 25 25 H 1.08991 * 109.47775 * 59.99714 * 1 2 3 26 26 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46487 * 299.99527 * 1 2 3 28 28 H 1.09005 * 109.46852 * 240.00125 * 2 1 3 29 29 H 1.08992 * 109.47996 * 120.00791 * 2 1 3 30 30 H 1.09000 * 109.82609 * 121.22500 * 6 5 3 31 31 H 1.08997 * 109.82839 * 242.19401 * 6 5 3 32 32 H 1.09006 * 110.84785 * 139.55089 * 7 6 5 33 33 H 1.09007 * 110.84761 * 263.16031 * 7 6 5 34 34 H 0.97002 * 119.99725 * 0.02562 * 12 10 8 35 35 H 1.09001 * 112.94429 * 23.41407 * 13 12 10 36 36 H 1.08996 * 113.76583 * 336.34525 * 14 13 12 37 37 H 1.09001 * 113.76900 * 107.74867 * 14 13 12 38 38 H 0.96996 * 120.00338 * 179.97438 * 19 18 16 39 39 H 1.08993 * 113.76927 * 221.05587 * 24 15 14 40 40 H 1.09005 * 113.86788 * 89.67357 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9919 0.8442 5 8 1.6987 2.0920 -1.2349 6 6 2.7560 2.9727 -1.6330 7 6 3.8855 2.8476 -0.5882 8 6 3.5882 1.4655 0.0548 9 1 4.0145 0.6564 -0.5385 10 6 4.0832 1.4105 1.4771 11 8 3.2998 1.2296 2.3853 12 7 5.3963 1.5620 1.7401 13 6 5.8774 1.5091 3.1228 14 6 6.3203 2.8750 3.6778 15 7 7.4617 2.1512 4.2708 16 6 8.2889 2.3741 5.3391 17 1 9.0738 1.6692 5.5706 18 6 8.1180 3.5053 6.1251 19 7 7.1606 4.3636 5.8439 20 14 9.2460 3.8090 7.5829 21 1 10.4242 4.5976 7.1412 22 1 8.5101 4.5626 8.6296 23 1 9.7003 2.5081 8.1366 24 6 7.3535 1.0909 3.2500 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.1277 2.6833 -2.6159 31 1 2.3908 3.9992 -1.6619 32 1 4.8627 2.8487 -1.0712 33 1 3.8175 3.6433 0.1538 34 1 6.0228 1.7070 1.0139 35 1 5.2074 0.9608 3.7851 36 1 6.6065 3.5905 2.9069 37 1 5.6346 3.2931 4.4147 38 1 7.0409 5.1539 6.3934 39 1 7.4926 0.0847 3.6452 40 1 7.9427 1.2806 2.3527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030713017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:45 Heat of formation + Delta-G solvation = -37.407292 kcal Electronic energy + Delta-G solvation = -20805.900446 eV Core-core repulsion = 17622.148753 eV Total energy + Delta-G solvation = -3183.751693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45567 -38.82541 -37.40612 -33.83128 -33.47648 -32.47884 -31.60282 -28.59751 -27.45226 -24.87609 -24.43710 -23.13905 -22.29629 -20.92205 -20.05082 -19.57236 -17.56472 -16.84162 -16.46787 -15.95495 -15.27676 -15.04837 -14.82313 -14.53132 -14.01260 -13.83012 -13.41779 -13.37672 -13.12789 -12.74638 -12.36431 -11.98375 -11.81229 -11.60072 -11.49631 -11.44912 -11.07154 -10.94550 -10.89147 -10.81971 -10.71861 -10.48685 -10.07973 -9.67450 -9.59885 -9.46041 -8.84790 -8.49708 -6.96498 -5.81301 -3.15631 2.78718 3.31546 3.37990 3.42510 3.44374 3.67498 4.27490 4.42288 4.50380 4.64393 4.90546 5.00677 5.05616 5.11126 5.19701 5.27130 5.37607 5.44201 5.52791 5.54772 5.57971 5.72220 5.82719 5.87974 5.96650 5.96758 6.15754 6.16455 6.26553 6.36003 6.50643 6.69786 6.89634 7.18681 7.30627 7.51258 7.80243 7.92659 8.45701 8.98947 9.65176 10.51193 11.35369 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.003700 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.400751 B = 7565.487522 C = 7730.351331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.102 3.898 4 H 0.086 0.914 5 O -0.379 6.379 6 C 0.054 3.946 7 C -0.148 4.148 8 C -0.145 4.145 9 H 0.111 0.889 10 C 0.523 3.477 11 O -0.538 6.538 12 N -0.712 5.712 13 C 0.090 3.910 14 C 0.154 3.846 15 N -0.606 5.606 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.112 3.888 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.112 0.888 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.255 0.745 39 H 0.049 0.951 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -5.763 -16.058 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.044 3.956 4 H 0.103 0.897 5 O -0.299 6.299 6 C -0.023 4.023 7 C -0.185 4.185 8 C -0.167 4.167 9 H 0.129 0.871 10 C 0.308 3.692 11 O -0.415 6.415 12 N -0.362 5.362 13 C -0.014 4.014 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.015 4.015 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.230 0.770 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.501 -5.749 -15.189 18.331 hybrid contribution 1.390 0.506 0.422 1.538 sum -7.111 -5.243 -14.767 17.208 Atomic orbital electron populations 1.21682 0.95212 1.01339 1.02216 1.21642 0.96970 0.94446 1.02601 1.22837 0.90943 0.94517 0.87286 0.89660 1.88410 1.41618 1.59492 1.40376 1.23072 0.87200 0.94568 0.97457 1.23135 1.00262 0.96230 0.98914 1.23082 0.98333 0.99923 0.95368 0.87129 1.20059 0.82832 0.76482 0.89862 1.90717 1.54919 1.48915 1.46915 1.46142 1.07534 1.72392 1.10146 1.23937 0.95133 1.01394 0.80973 1.22667 0.88991 0.91117 0.94447 1.45671 1.36589 1.23108 1.27918 1.18989 1.09291 1.05592 1.01591 0.90022 1.24821 0.98951 0.96910 0.99559 1.69824 1.33000 1.13150 1.40522 0.86086 0.79679 0.77893 0.81884 1.21552 1.21523 1.20506 1.22877 0.92001 0.94113 0.92519 0.92272 0.92931 0.92613 0.91680 0.90146 0.91190 0.91197 0.89194 0.89605 0.77013 0.87048 0.95463 0.90499 0.93496 0.93254 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.83 37.15 0.37 -1.16 16 2 C -0.12 -1.33 5.68 -26.73 -0.15 -1.48 16 3 C 0.10 1.24 2.52 -25.71 -0.06 1.18 16 4 H 0.09 1.22 7.50 -51.93 -0.39 0.83 16 5 O -0.38 -4.55 10.69 -35.23 -0.38 -4.93 16 6 C 0.05 0.50 7.79 37.88 0.30 0.79 16 7 C -0.15 -1.39 6.45 -24.79 -0.16 -1.55 16 8 C -0.15 -1.61 2.90 -89.53 -0.26 -1.87 16 9 H 0.11 1.01 8.06 -51.93 -0.42 0.59 16 10 C 0.52 7.79 7.16 -10.99 -0.08 7.71 16 11 O -0.54 -10.18 15.30 5.55 0.08 -10.09 16 12 N -0.71 -10.43 5.32 -55.34 -0.29 -10.72 16 13 C 0.09 1.72 4.43 -70.15 -0.31 1.41 16 14 C 0.15 3.64 7.32 -2.97 -0.02 3.62 16 15 N -0.61 -15.43 3.70 -178.08 -0.66 -16.09 16 16 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.36 11.38 55.49 0.63 -26.72 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.11 2.19 8.69 -2.97 -0.03 2.17 16 25 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.40 4.63 8.73 -40.82 -0.36 4.27 16 35 H 0.11 2.33 7.46 -51.93 -0.39 1.94 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 2.08 7.15 -51.93 -0.37 1.71 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -32.65 328.50 -7.87 -40.52 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.52 Total: 2.00 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.67 Total: 4.05 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.32 Total: -53.54 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.29 Total: -15.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.65 -7.87 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030713017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.117 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds