Wall clock time and date at job start Mon Mar 30 2020 01:20:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53001 * 109.47300 * 2 1
4 4 H 1.08997 * 110.35136 * 55.69455 * 3 2 1
5 5 O 1.43641 * 110.30914 * 293.55274 * 3 2 1
6 6 C 1.43245 * 109.97106 * 216.65334 * 5 3 2
7 7 C 1.54377 * 107.58529 * 1.71442 * 6 5 3
8 8 C 1.54940 * 110.31180 * 177.83927 * 3 2 1
9 9 H 1.09007 * 111.12756 * 37.44000 * 8 3 2
10 10 C 1.50703 * 111.16345 * 273.29579 * 8 3 2
11 11 O 1.21290 * 119.99735 * 6.96855 * 10 8 3
12 12 N 1.34773 * 120.00431 * 186.96467 * 10 8 3
13 13 C 1.46494 * 120.00285 * 179.97438 * 12 10 8
14 14 C 1.53948 * 113.74528 * 251.68074 * 13 12 10
15 15 N 1.47582 * 86.11578 * 222.04569 * 14 13 12
16 16 C 1.36944 * 134.49267 * 204.63679 * 15 14 13
17 17 H 1.08002 * 119.99864 * 179.97438 * 16 15 14
18 18 C 1.38808 * 119.99813 * 0.02562 * 16 15 14
19 19 N 1.31620 * 120.00384 * 0.02562 * 18 16 15
20 20 Si 1.86803 * 119.99982 * 179.97438 * 18 16 15
21 21 H 1.48494 * 109.46830 * 90.00285 * 20 18 16
22 22 H 1.48497 * 109.47038 * 210.00239 * 20 18 16
23 23 H 1.48502 * 109.47029 * 330.00147 * 20 18 16
24 24 C 1.47585 * 91.01591 * 24.63859 * 15 14 13
25 25 H 1.08991 * 109.47775 * 59.99714 * 1 2 3
26 26 H 1.09007 * 109.47317 * 179.97438 * 1 2 3
27 27 H 1.09009 * 109.46487 * 299.99527 * 1 2 3
28 28 H 1.09005 * 109.46852 * 240.00125 * 2 1 3
29 29 H 1.08992 * 109.47996 * 120.00791 * 2 1 3
30 30 H 1.09000 * 109.82609 * 121.22500 * 6 5 3
31 31 H 1.08997 * 109.82839 * 242.19401 * 6 5 3
32 32 H 1.09006 * 110.84785 * 139.55089 * 7 6 5
33 33 H 1.09007 * 110.84761 * 263.16031 * 7 6 5
34 34 H 0.97002 * 119.99725 * 0.02562 * 12 10 8
35 35 H 1.09001 * 112.94429 * 23.41407 * 13 12 10
36 36 H 1.08996 * 113.76583 * 336.34525 * 14 13 12
37 37 H 1.09001 * 113.76900 * 107.74867 * 14 13 12
38 38 H 0.96996 * 120.00338 * 179.97438 * 19 18 16
39 39 H 1.08993 * 113.76927 * 221.05587 * 24 15 14
40 40 H 1.09005 * 113.86788 * 89.67357 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6233 1.9919 0.8442
5 8 1.6987 2.0920 -1.2349
6 6 2.7560 2.9727 -1.6330
7 6 3.8855 2.8476 -0.5882
8 6 3.5882 1.4655 0.0548
9 1 4.0145 0.6564 -0.5385
10 6 4.0832 1.4105 1.4771
11 8 3.2998 1.2296 2.3853
12 7 5.3963 1.5620 1.7401
13 6 5.8774 1.5091 3.1228
14 6 6.3203 2.8750 3.6778
15 7 7.4617 2.1512 4.2708
16 6 8.2889 2.3741 5.3391
17 1 9.0738 1.6692 5.5706
18 6 8.1180 3.5053 6.1251
19 7 7.1606 4.3636 5.8439
20 14 9.2460 3.8090 7.5829
21 1 10.4242 4.5976 7.1412
22 1 8.5101 4.5626 8.6296
23 1 9.7003 2.5081 8.1366
24 6 7.3535 1.0909 3.2500
25 1 -0.3634 0.5138 -0.8898
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3632 0.5138 0.8901
28 1 1.8932 -0.5138 -0.8901
29 1 1.8934 -0.5139 0.8898
30 1 3.1277 2.6833 -2.6159
31 1 2.3908 3.9992 -1.6619
32 1 4.8627 2.8487 -1.0712
33 1 3.8175 3.6433 0.1538
34 1 6.0228 1.7070 1.0139
35 1 5.2074 0.9608 3.7851
36 1 6.6065 3.5905 2.9069
37 1 5.6346 3.2931 4.4147
38 1 7.0409 5.1539 6.3934
39 1 7.4926 0.0847 3.6452
40 1 7.9427 1.2806 2.3527
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001030713017.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:20:45
Heat of formation + Delta-G solvation = -37.407292 kcal
Electronic energy + Delta-G solvation = -20805.900446 eV
Core-core repulsion = 17622.148753 eV
Total energy + Delta-G solvation = -3183.751693 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.45567 -38.82541 -37.40612 -33.83128 -33.47648 -32.47884 -31.60282 -28.59751
-27.45226 -24.87609 -24.43710 -23.13905 -22.29629 -20.92205 -20.05082 -19.57236
-17.56472 -16.84162 -16.46787 -15.95495 -15.27676 -15.04837 -14.82313 -14.53132
-14.01260 -13.83012 -13.41779 -13.37672 -13.12789 -12.74638 -12.36431 -11.98375
-11.81229 -11.60072 -11.49631 -11.44912 -11.07154 -10.94550 -10.89147 -10.81971
-10.71861 -10.48685 -10.07973 -9.67450 -9.59885 -9.46041 -8.84790 -8.49708
-6.96498 -5.81301 -3.15631 2.78718 3.31546 3.37990 3.42510 3.44374
3.67498 4.27490 4.42288 4.50380 4.64393 4.90546 5.00677 5.05616
5.11126 5.19701 5.27130 5.37607 5.44201 5.52791 5.54772 5.57971
5.72220 5.82719 5.87974 5.96650 5.96758 6.15754 6.16455 6.26553
6.36003 6.50643 6.69786 6.89634 7.18681 7.30627 7.51258 7.80243
7.92659 8.45701 8.98947 9.65176 10.51193 11.35369
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.037009 B = 0.003700 C = 0.003621
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 756.400751 B = 7565.487522 C = 7730.351331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.119 4.119
3 C 0.102 3.898
4 H 0.086 0.914
5 O -0.379 6.379
6 C 0.054 3.946
7 C -0.148 4.148
8 C -0.145 4.145
9 H 0.111 0.889
10 C 0.523 3.477
11 O -0.538 6.538
12 N -0.712 5.712
13 C 0.090 3.910
14 C 0.154 3.846
15 N -0.606 5.606
16 C -0.227 4.227
17 H 0.082 0.918
18 C -0.005 4.005
19 N -0.919 5.919
20 Si 0.915 3.085
21 H -0.288 1.288
22 H -0.289 1.289
23 H -0.280 1.280
24 C 0.112 3.888
25 H 0.058 0.942
26 H 0.052 0.948
27 H 0.055 0.945
28 H 0.064 0.936
29 H 0.080 0.920
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.089 0.911
33 H 0.085 0.915
34 H 0.396 0.604
35 H 0.112 0.888
36 H 0.028 0.972
37 H 0.077 0.923
38 H 0.255 0.745
39 H 0.049 0.951
40 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.871 -5.763 -16.058 18.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.157 4.157
3 C 0.044 3.956
4 H 0.103 0.897
5 O -0.299 6.299
6 C -0.023 4.023
7 C -0.185 4.185
8 C -0.167 4.167
9 H 0.129 0.871
10 C 0.308 3.692
11 O -0.415 6.415
12 N -0.362 5.362
13 C -0.014 4.014
14 C 0.028 3.972
15 N -0.333 5.333
16 C -0.355 4.355
17 H 0.100 0.900
18 C -0.202 4.202
19 N -0.565 5.565
20 Si 0.745 3.255
21 H -0.216 1.216
22 H -0.215 1.215
23 H -0.205 1.205
24 C -0.015 4.015
25 H 0.077 0.923
26 H 0.071 0.929
27 H 0.074 0.926
28 H 0.083 0.917
29 H 0.099 0.901
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.108 0.892
33 H 0.104 0.896
34 H 0.230 0.770
35 H 0.130 0.870
36 H 0.045 0.955
37 H 0.095 0.905
38 H 0.065 0.935
39 H 0.067 0.933
40 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -8.501 -5.749 -15.189 18.331
hybrid contribution 1.390 0.506 0.422 1.538
sum -7.111 -5.243 -14.767 17.208
Atomic orbital electron populations
1.21682 0.95212 1.01339 1.02216 1.21642 0.96970 0.94446 1.02601
1.22837 0.90943 0.94517 0.87286 0.89660 1.88410 1.41618 1.59492
1.40376 1.23072 0.87200 0.94568 0.97457 1.23135 1.00262 0.96230
0.98914 1.23082 0.98333 0.99923 0.95368 0.87129 1.20059 0.82832
0.76482 0.89862 1.90717 1.54919 1.48915 1.46915 1.46142 1.07534
1.72392 1.10146 1.23937 0.95133 1.01394 0.80973 1.22667 0.88991
0.91117 0.94447 1.45671 1.36589 1.23108 1.27918 1.18989 1.09291
1.05592 1.01591 0.90022 1.24821 0.98951 0.96910 0.99559 1.69824
1.33000 1.13150 1.40522 0.86086 0.79679 0.77893 0.81884 1.21552
1.21523 1.20506 1.22877 0.92001 0.94113 0.92519 0.92272 0.92931
0.92613 0.91680 0.90146 0.91190 0.91197 0.89194 0.89605 0.77013
0.87048 0.95463 0.90499 0.93496 0.93254 0.94767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.53 9.83 37.15 0.37 -1.16 16
2 C -0.12 -1.33 5.68 -26.73 -0.15 -1.48 16
3 C 0.10 1.24 2.52 -25.71 -0.06 1.18 16
4 H 0.09 1.22 7.50 -51.93 -0.39 0.83 16
5 O -0.38 -4.55 10.69 -35.23 -0.38 -4.93 16
6 C 0.05 0.50 7.79 37.88 0.30 0.79 16
7 C -0.15 -1.39 6.45 -24.79 -0.16 -1.55 16
8 C -0.15 -1.61 2.90 -89.53 -0.26 -1.87 16
9 H 0.11 1.01 8.06 -51.93 -0.42 0.59 16
10 C 0.52 7.79 7.16 -10.99 -0.08 7.71 16
11 O -0.54 -10.18 15.30 5.55 0.08 -10.09 16
12 N -0.71 -10.43 5.32 -55.34 -0.29 -10.72 16
13 C 0.09 1.72 4.43 -70.15 -0.31 1.41 16
14 C 0.15 3.64 7.32 -2.97 -0.02 3.62 16
15 N -0.61 -15.43 3.70 -178.08 -0.66 -16.09 16
16 C -0.23 -6.35 10.70 -15.06 -0.16 -6.51 16
17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16
18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
19 N -0.92 -27.36 11.38 55.49 0.63 -26.72 16
20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16
21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16
23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
24 C 0.11 2.19 8.69 -2.97 -0.03 2.17 16
25 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16
26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
29 H 0.08 0.97 8.03 -51.93 -0.42 0.55 16
30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16
34 H 0.40 4.63 8.73 -40.82 -0.36 4.27 16
35 H 0.11 2.33 7.46 -51.93 -0.39 1.94 16
36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
37 H 0.08 2.08 7.15 -51.93 -0.37 1.71 16
38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
40 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16
LS Contribution 328.50 15.07 4.95 4.95
Total: -1.00 -32.65 328.50 -7.87 -40.52
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -6.52 Total: 2.00 kcal
Atomic # 6 Polarization: 4.72 SS G_CDS: -0.67 Total: 4.05 kcal
Atomic # 7 Polarization: -53.22 SS G_CDS: -0.32 Total: -53.54 kcal
Atomic # 8 Polarization: -14.73 SS G_CDS: -0.29 Total: -15.02 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -32.65 -7.87 -40.52 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001030713017.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.117 kcal
(2) G-P(sol) polarization free energy of solvation -32.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.534 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds