Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 H 1.08997 * 110.35136 * 55.69455 * 3 2 1 5 5 O 1.43641 * 110.30914 * 293.55274 * 3 2 1 6 6 C 1.43245 * 109.97106 * 216.65334 * 5 3 2 7 7 C 1.54377 * 107.58529 * 1.71442 * 6 5 3 8 8 C 1.54940 * 110.31180 * 177.83927 * 3 2 1 9 9 H 1.09007 * 111.12756 * 37.44000 * 8 3 2 10 10 C 1.50703 * 111.16345 * 273.29579 * 8 3 2 11 11 O 1.21290 * 119.99735 * 6.96855 * 10 8 3 12 12 N 1.34773 * 120.00431 * 186.96467 * 10 8 3 13 13 C 1.46494 * 120.00285 * 179.97438 * 12 10 8 14 14 C 1.53948 * 113.74528 * 251.68074 * 13 12 10 15 15 N 1.47582 * 86.11578 * 222.04569 * 14 13 12 16 16 C 1.36944 * 134.49267 * 204.63679 * 15 14 13 17 17 H 1.08002 * 119.99864 * 179.97438 * 16 15 14 18 18 C 1.38808 * 119.99813 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00384 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46830 * 90.00285 * 20 18 16 22 22 H 1.48497 * 109.47038 * 210.00239 * 20 18 16 23 23 H 1.48502 * 109.47029 * 330.00147 * 20 18 16 24 24 C 1.47585 * 91.01591 * 24.63859 * 15 14 13 25 25 H 1.08991 * 109.47775 * 59.99714 * 1 2 3 26 26 H 1.09007 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46487 * 299.99527 * 1 2 3 28 28 H 1.09005 * 109.46852 * 240.00125 * 2 1 3 29 29 H 1.08992 * 109.47996 * 120.00791 * 2 1 3 30 30 H 1.09000 * 109.82609 * 121.22500 * 6 5 3 31 31 H 1.08997 * 109.82839 * 242.19401 * 6 5 3 32 32 H 1.09006 * 110.84785 * 139.55089 * 7 6 5 33 33 H 1.09007 * 110.84761 * 263.16031 * 7 6 5 34 34 H 0.97002 * 119.99725 * 0.02562 * 12 10 8 35 35 H 1.09001 * 112.94429 * 23.41407 * 13 12 10 36 36 H 1.08996 * 113.76583 * 336.34525 * 14 13 12 37 37 H 1.09001 * 113.76900 * 107.74867 * 14 13 12 38 38 H 0.96996 * 120.00338 * 179.97438 * 19 18 16 39 39 H 1.08993 * 113.76927 * 221.05587 * 24 15 14 40 40 H 1.09005 * 113.86788 * 89.67357 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9919 0.8442 5 8 1.6987 2.0920 -1.2349 6 6 2.7560 2.9727 -1.6330 7 6 3.8855 2.8476 -0.5882 8 6 3.5882 1.4655 0.0548 9 1 4.0145 0.6564 -0.5385 10 6 4.0832 1.4105 1.4771 11 8 3.2998 1.2296 2.3853 12 7 5.3963 1.5620 1.7401 13 6 5.8774 1.5091 3.1228 14 6 6.3203 2.8750 3.6778 15 7 7.4617 2.1512 4.2708 16 6 8.2889 2.3741 5.3391 17 1 9.0738 1.6692 5.5706 18 6 8.1180 3.5053 6.1251 19 7 7.1606 4.3636 5.8439 20 14 9.2460 3.8090 7.5829 21 1 10.4242 4.5976 7.1412 22 1 8.5101 4.5626 8.6296 23 1 9.7003 2.5081 8.1366 24 6 7.3535 1.0909 3.2500 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.1277 2.6833 -2.6159 31 1 2.3908 3.9992 -1.6619 32 1 4.8627 2.8487 -1.0712 33 1 3.8175 3.6433 0.1538 34 1 6.0228 1.7070 1.0139 35 1 5.2074 0.9608 3.7851 36 1 6.6065 3.5905 2.9069 37 1 5.6346 3.2931 4.4147 38 1 7.0409 5.1539 6.3934 39 1 7.4926 0.0847 3.6452 40 1 7.9427 1.2806 2.3527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030713017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -60.681888 kcal Electronic energy + Delta-G solvation = -20806.909708 eV Core-core repulsion = 17622.148753 eV Total energy + Delta-G solvation = -3184.760955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56329 -40.13871 -38.90363 -35.23900 -34.46001 -33.99153 -32.98821 -29.65449 -29.15975 -26.63173 -25.78020 -24.40315 -23.43785 -21.84082 -21.39516 -21.07436 -18.81834 -18.61863 -17.49373 -17.27538 -16.97801 -16.32951 -15.91102 -15.78373 -15.66685 -14.86340 -14.70492 -14.49022 -14.24735 -13.99698 -13.68904 -13.35063 -13.24186 -13.16912 -12.86287 -12.68709 -12.61253 -12.37954 -12.29984 -11.97467 -11.88711 -11.73577 -11.60895 -11.53826 -10.90627 -10.85419 -10.44365 -9.96847 -8.98875 -7.93682 -5.29100 1.45016 1.47544 1.56307 1.57860 2.09166 2.48157 2.79789 3.24437 3.36251 3.43888 3.61534 3.73717 3.84163 4.09241 4.17777 4.21477 4.23632 4.36453 4.45970 4.51402 4.56335 4.73844 4.81314 4.85321 4.88337 4.89441 5.01180 5.09588 5.11144 5.16698 5.22396 5.29475 5.41583 5.46698 5.69013 5.88373 6.05217 6.58621 6.86887 7.26603 7.56785 8.49369 9.23019 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.003700 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.400751 B = 7565.487522 C = 7730.351331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.100 3.900 4 H 0.053 0.947 5 O -0.391 6.391 6 C 0.048 3.952 7 C -0.143 4.143 8 C -0.134 4.134 9 H 0.144 0.856 10 C 0.523 3.477 11 O -0.582 6.582 12 N -0.698 5.698 13 C 0.120 3.880 14 C 0.152 3.848 15 N -0.639 5.639 16 C -0.236 4.236 17 H 0.091 0.909 18 C -0.068 4.068 19 N -0.955 5.955 20 Si 0.982 3.018 21 H -0.283 1.283 22 H -0.297 1.297 23 H -0.265 1.265 24 C 0.122 3.878 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.248 0.752 39 H 0.063 0.937 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -7.022 -18.278 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.042 3.958 4 H 0.071 0.929 5 O -0.312 6.312 6 C -0.028 4.028 7 C -0.181 4.181 8 C -0.155 4.155 9 H 0.162 0.838 10 C 0.310 3.690 11 O -0.462 6.462 12 N -0.349 5.349 13 C 0.013 3.987 14 C 0.025 3.975 15 N -0.366 5.366 16 C -0.364 4.364 17 H 0.108 0.892 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.810 3.190 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.190 1.190 24 C -0.003 4.003 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.254 0.746 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.203 -7.040 -17.475 20.170 hybrid contribution 0.938 0.888 1.047 1.663 sum -6.265 -6.152 -16.428 18.628 Atomic orbital electron populations 1.21668 0.94950 1.02121 1.01563 1.21626 0.97300 0.93760 1.02802 1.22715 0.91687 0.94738 0.86611 0.92925 1.88400 1.42971 1.59977 1.39806 1.23290 0.86495 0.94549 0.98436 1.23177 1.02124 0.94245 0.98534 1.23057 0.97473 1.02233 0.92747 0.83837 1.20740 0.82168 0.74930 0.91185 1.90712 1.55999 1.50684 1.48782 1.45847 1.08117 1.72191 1.08782 1.23153 0.95002 0.97676 0.82858 1.22560 0.88277 0.93128 0.93530 1.46006 1.36734 1.24997 1.28898 1.19442 1.09251 1.05444 1.02300 0.89163 1.25707 1.00698 0.97114 1.02609 1.70034 1.35014 1.13590 1.41753 0.85022 0.77604 0.78049 0.78312 1.21019 1.22332 1.18987 1.23025 0.91970 0.93251 0.92090 0.92267 0.91437 0.93898 0.89778 0.91415 0.88511 0.90830 0.85915 0.91518 0.74647 0.89131 0.95462 0.95113 0.94283 0.91843 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.83 71.98 0.71 -2.23 16 2 C -0.12 -2.48 5.68 30.59 0.17 -2.31 16 3 C 0.10 2.37 2.52 31.26 0.08 2.45 16 4 H 0.05 1.57 7.50 -2.39 -0.02 1.56 16 5 O -0.39 -8.71 10.69 -148.98 -1.59 -10.30 16 6 C 0.05 0.76 7.79 72.45 0.56 1.33 16 7 C -0.14 -2.30 6.45 31.85 0.21 -2.09 16 8 C -0.13 -2.66 2.90 -10.09 -0.03 -2.69 16 9 H 0.14 1.99 8.06 -2.38 -0.02 1.97 16 10 C 0.52 15.05 7.16 87.66 0.63 15.68 16 11 O -0.58 -22.49 15.30 -3.06 -0.05 -22.54 16 12 N -0.70 -19.17 5.32 -447.39 -2.38 -21.55 16 13 C 0.12 4.49 4.43 46.75 0.21 4.70 16 14 C 0.15 7.32 7.32 86.48 0.63 7.96 16 15 N -0.64 -32.47 3.70 -717.33 -2.65 -35.12 16 16 C -0.24 -13.20 10.70 84.03 0.90 -12.30 16 17 H 0.09 4.74 7.83 -2.91 -0.02 4.71 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.96 -58.75 11.38 21.65 0.25 -58.50 16 20 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 C 0.12 4.53 8.69 86.48 0.75 5.28 16 25 H 0.06 1.18 7.90 -2.39 -0.02 1.16 16 26 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.07 1.60 8.03 -2.39 -0.02 1.58 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 1.35 8.03 -2.38 -0.02 1.33 16 34 H 0.42 8.26 8.73 -92.71 -0.81 7.45 16 35 H 0.09 3.85 7.46 -2.39 -0.02 3.83 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.03 1.75 7.15 -2.39 -0.02 1.73 16 38 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.14 8.12 -2.38 -0.02 2.12 16 Total: -1.00 -73.56 328.50 1.10 -72.46 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.21 Total: 15.41 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 5.29 Total: 12.33 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.79 Total: -115.18 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -1.64 Total: -32.84 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.56 1.10 -72.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030713017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.779 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds