Wall clock time and date at job start Mon Mar 30 2020 01:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53010 * 109.47020 * 2 1
4 4 H 1.08994 * 109.46936 * 54.50797 * 3 2 1
5 5 O 1.42896 * 109.47069 * 294.50260 * 3 2 1
6 6 C 1.42900 * 113.99705 * 149.99890 * 5 3 2
7 7 C 1.50696 * 109.46887 * 174.50459 * 3 2 1
8 8 O 1.21286 * 119.99946 * 110.38940 * 7 3 2
9 9 N 1.34780 * 120.00659 * 290.39088 * 7 3 2
10 10 C 1.47874 * 126.93708 * 354.91718 * 9 7 3
11 11 C 1.56018 * 105.09962 * 182.02650 * 10 9 7
12 12 H 1.08999 * 116.24685 * 159.68500 * 11 10 9
13 13 C 1.57075 * 99.60926 * 32.80378 * 11 10 9
14 14 C 1.49288 * 126.95133 * 174.94467 * 9 7 3
15 15 H 1.09001 * 116.14685 * 15.82032 * 14 9 7
16 16 C 1.56014 * 104.09313 * 246.67537 * 14 9 7
17 17 N 1.47869 * 105.10284 * 288.76522 * 16 14 9
18 18 C 1.36939 * 126.94275 * 181.97897 * 17 16 14
19 19 H 1.07998 * 119.99661 * 180.02562 * 18 17 16
20 20 C 1.38810 * 120.00053 * 0.02562 * 18 17 16
21 21 N 1.31616 * 120.00109 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 120.00083 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47116 * 90.00442 * 22 20 18
24 24 H 1.48501 * 109.47219 * 210.00211 * 22 20 18
25 25 H 1.48502 * 109.47061 * 330.00491 * 22 20 18
26 26 H 1.09001 * 109.47148 * 60.00033 * 1 2 3
27 27 H 1.09003 * 109.47115 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47228 * 300.00046 * 1 2 3
29 29 H 1.09000 * 109.47461 * 240.00312 * 2 1 3
30 30 H 1.09001 * 109.47148 * 119.99967 * 2 1 3
31 31 H 1.09001 * 109.46871 * 60.00063 * 6 5 3
32 32 H 1.09000 * 109.47301 * 180.02562 * 6 5 3
33 33 H 1.09004 * 109.46950 * 300.00399 * 6 5 3
34 34 H 1.08996 * 110.31769 * 63.11728 * 10 9 7
35 35 H 1.09001 * 110.31480 * 300.93163 * 10 9 7
36 36 H 1.09007 * 112.37195 * 64.27759 * 13 11 10
37 37 H 1.09004 * 112.36861 * 191.71198 * 13 11 10
38 38 H 1.08998 * 110.31776 * 169.86114 * 16 14 9
39 39 H 1.09000 * 110.31492 * 47.67280 * 16 14 9
40 40 H 0.96999 * 120.00212 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5985 1.9840 0.8367
5 8 1.6719 2.0779 -1.2259
6 6 1.4649 3.4871 -1.1109
7 6 3.5408 1.4447 0.1361
8 8 4.2341 1.7799 -0.8009
9 7 4.1127 1.0742 1.2989
10 6 3.4211 0.7402 2.5626
11 6 4.5622 0.4373 3.5826
12 1 4.2962 0.5045 4.6375
13 6 5.6573 1.4315 3.0538
14 6 5.5721 0.9184 1.5716
15 1 6.2474 1.3740 0.8474
16 6 5.7519 -0.6121 1.8151
17 7 5.1196 -0.8704 3.1266
18 6 5.0574 -2.0675 3.7888
19 1 4.5640 -2.1292 4.7475
20 6 5.6284 -3.2015 3.2278
21 7 6.2301 -3.1261 2.0596
22 14 5.5442 -4.8342 4.1314
23 1 4.3120 -5.5592 3.7299
24 1 6.7345 -5.6527 3.7868
25 1 5.5192 -4.5888 5.5958
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 2.3830 3.9622 -0.7654
32 1 1.1883 3.8944 -2.0834
33 1 0.6649 3.6796 -0.3959
34 1 2.7905 -0.1385 2.4281
35 1 2.8245 1.5867 2.9026
36 1 5.3528 2.4737 3.1502
37 1 6.6345 1.2482 3.5007
38 1 6.8108 -0.8682 1.8486
39 1 5.2486 -1.1813 1.0336
40 1 6.6295 -3.9185 1.6678
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001032311147.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:24
Heat of formation + Delta-G solvation = -24.150814 kcal
Electronic energy + Delta-G solvation = -21938.636448 eV
Core-core repulsion = 18755.459600 eV
Total energy + Delta-G solvation = -3183.176849 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.26265 -38.64920 -36.78129 -33.92857 -33.27410 -31.43514 -29.20641 -28.60002
-27.60603 -25.91634 -25.21616 -23.49834 -21.86221 -20.55628 -19.87042 -18.56285
-17.48824 -16.82434 -16.27035 -15.71723 -15.21876 -14.97067 -14.53375 -14.16748
-13.93404 -13.59342 -13.34438 -13.08193 -12.55249 -12.19463 -12.00652 -11.78595
-11.70897 -11.53665 -11.33518 -11.15254 -10.96792 -10.88683 -10.73679 -10.66614
-10.62961 -10.35222 -10.24294 -10.08660 -9.65823 -8.99930 -8.69357 -8.00692
-6.95525 -5.79038 -3.14009 2.97574 3.27488 3.35622 3.40375 3.43214
3.87648 4.39552 4.72600 4.92545 4.99092 5.09684 5.16025 5.26878
5.33637 5.35883 5.42985 5.53447 5.55741 5.60260 5.66222 5.75302
5.81109 5.88301 5.98383 6.15134 6.17505 6.26809 6.36123 6.38241
6.49969 6.56862 6.66877 7.08491 7.40240 7.47354 7.69745 8.06017
8.09538 8.59830 9.07654 9.68646 10.37586 11.32954
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.023486 B = 0.005963 C = 0.005379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1191.891496 B = 4694.855147 C = 5204.608339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.120 4.120
3 C 0.082 3.918
4 H 0.079 0.921
5 O -0.358 6.358
6 C 0.031 3.969
7 C 0.504 3.496
8 O -0.542 6.542
9 N -0.605 5.605
10 C 0.079 3.921
11 C 0.141 3.859
12 H 0.107 0.893
13 C -0.150 4.150
14 C 0.097 3.903
15 H 0.113 0.887
16 C 0.174 3.826
17 N -0.597 5.597
18 C -0.233 4.233
19 H 0.081 0.919
20 C -0.005 4.005
21 N -0.919 5.919
22 Si 0.912 3.088
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.281 1.281
26 H 0.060 0.940
27 H 0.059 0.941
28 H 0.051 0.949
29 H 0.076 0.924
30 H 0.090 0.910
31 H 0.042 0.958
32 H 0.086 0.914
33 H 0.039 0.961
34 H 0.075 0.925
35 H 0.052 0.948
36 H 0.064 0.936
37 H 0.084 0.916
38 H 0.056 0.944
39 H 0.047 0.953
40 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.276 10.657 0.226 14.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.157 4.157
3 C 0.021 3.979
4 H 0.096 0.904
5 O -0.275 6.275
6 C -0.066 4.066
7 C 0.291 3.709
8 O -0.420 6.420
9 N -0.341 5.341
10 C -0.046 4.046
11 C 0.032 3.968
12 H 0.125 0.875
13 C -0.190 4.190
14 C -0.006 4.006
15 H 0.131 0.869
16 C 0.049 3.951
17 N -0.321 5.321
18 C -0.361 4.361
19 H 0.099 0.901
20 C -0.202 4.202
21 N -0.565 5.565
22 Si 0.742 3.258
23 H -0.216 1.216
24 H -0.217 1.217
25 H -0.206 1.206
26 H 0.079 0.921
27 H 0.078 0.922
28 H 0.071 0.929
29 H 0.095 0.905
30 H 0.108 0.892
31 H 0.061 0.939
32 H 0.105 0.895
33 H 0.058 0.942
34 H 0.093 0.907
35 H 0.070 0.930
36 H 0.083 0.917
37 H 0.102 0.898
38 H 0.074 0.926
39 H 0.066 0.934
40 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -8.896 10.471 -0.584 13.752
hybrid contribution 0.002 -0.759 0.599 0.967
sum -8.895 9.711 0.015 13.169
Atomic orbital electron populations
1.21699 0.94706 1.01973 1.01850 1.21620 0.96784 0.92886 1.04457
1.22050 0.91278 0.96377 0.88207 0.90372 1.87975 1.88411 1.20492
1.30657 1.22805 0.99503 0.81910 1.02360 1.20895 0.90785 0.77525
0.81658 1.90661 1.64492 1.48572 1.38285 1.49282 1.08639 1.65809
1.10329 1.23407 0.97136 0.98911 0.85185 1.23174 0.90890 0.87052
0.95689 0.87548 1.24133 1.00922 0.97961 0.95939 1.24354 0.81111
0.99782 0.95334 0.86938 1.21929 0.98247 0.87198 0.87712 1.45241
1.64466 1.03204 1.19178 1.19038 1.31509 0.84204 1.01324 0.90144
1.24817 1.00269 0.98008 0.97064 1.69915 1.41171 1.28371 1.17064
0.86126 0.77166 0.83664 0.78794 1.21594 1.21679 1.20632 0.92130
0.92235 0.92947 0.90489 0.89217 0.93931 0.89508 0.94228 0.90726
0.92973 0.91741 0.89759 0.92627 0.93447 0.93538
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 9.81 37.15 0.36 -1.32 16
2 C -0.12 -1.76 5.57 -26.73 -0.15 -1.91 16
3 C 0.08 1.26 1.94 -27.88 -0.05 1.21 16
4 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16
5 O -0.36 -5.62 9.46 -54.96 -0.52 -6.14 16
6 C 0.03 0.37 10.81 101.05 1.09 1.46 16
7 C 0.50 9.58 7.17 -10.99 -0.08 9.50 16
8 O -0.54 -12.24 16.87 -14.17 -0.24 -12.48 16
9 N -0.61 -11.16 2.95 -156.78 -0.46 -11.62 16
10 C 0.08 1.30 5.62 -1.67 -0.01 1.29 16
11 C 0.14 2.53 5.53 -62.56 -0.35 2.19 16
12 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16
13 C -0.15 -2.51 6.81 -22.31 -0.15 -2.66 16
14 C 0.10 1.88 5.25 -62.56 -0.33 1.55 16
15 H 0.11 2.17 8.03 -51.93 -0.42 1.76 16
16 C 0.17 4.14 4.76 -1.68 -0.01 4.14 16
17 N -0.60 -14.00 3.02 -156.35 -0.47 -14.48 16
18 C -0.23 -6.06 10.37 -15.06 -0.16 -6.21 16
19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16
20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16
21 N -0.92 -26.51 10.56 55.49 0.59 -25.92 16
22 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16
23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16
24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
26 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16
27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
30 H 0.09 1.40 5.80 -51.93 -0.30 1.10 16
31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16
34 H 0.07 1.31 6.19 -51.93 -0.32 0.99 16
35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16
38 H 0.06 1.46 7.46 -51.93 -0.39 1.08 16
39 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16
40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 321.02 15.07 4.84 4.84
Total: -1.00 -31.81 321.02 -7.61 -39.42
By element:
Atomic # 1 Polarization: 7.40 SS G_CDS: -6.40 Total: 1.00 kcal
Atomic # 6 Polarization: 8.92 SS G_CDS: 0.08 Total: 9.00 kcal
Atomic # 7 Polarization: -51.68 SS G_CDS: -0.35 Total: -52.02 kcal
Atomic # 8 Polarization: -17.85 SS G_CDS: -0.76 Total: -18.61 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -31.81 -7.61 -39.42 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032311147.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.270 kcal
(2) G-P(sol) polarization free energy of solvation -31.806 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.536 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds