Wall clock time and date at job start Mon Mar 30 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.47020 * 2 1 4 4 H 1.08994 * 109.46936 * 54.50797 * 3 2 1 5 5 O 1.42896 * 109.47069 * 294.50260 * 3 2 1 6 6 C 1.42900 * 113.99705 * 149.99890 * 5 3 2 7 7 C 1.50696 * 109.46887 * 174.50459 * 3 2 1 8 8 O 1.21286 * 119.99946 * 110.38940 * 7 3 2 9 9 N 1.34780 * 120.00659 * 290.39088 * 7 3 2 10 10 C 1.47874 * 126.93708 * 354.91718 * 9 7 3 11 11 C 1.56018 * 105.09962 * 182.02650 * 10 9 7 12 12 H 1.08999 * 116.24685 * 159.68500 * 11 10 9 13 13 C 1.57075 * 99.60926 * 32.80378 * 11 10 9 14 14 C 1.49288 * 126.95133 * 174.94467 * 9 7 3 15 15 H 1.09001 * 116.14685 * 15.82032 * 14 9 7 16 16 C 1.56014 * 104.09313 * 246.67537 * 14 9 7 17 17 N 1.47869 * 105.10284 * 288.76522 * 16 14 9 18 18 C 1.36939 * 126.94275 * 181.97897 * 17 16 14 19 19 H 1.07998 * 119.99661 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00053 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00109 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47116 * 90.00442 * 22 20 18 24 24 H 1.48501 * 109.47219 * 210.00211 * 22 20 18 25 25 H 1.48502 * 109.47061 * 330.00491 * 22 20 18 26 26 H 1.09001 * 109.47148 * 60.00033 * 1 2 3 27 27 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47228 * 300.00046 * 1 2 3 29 29 H 1.09000 * 109.47461 * 240.00312 * 2 1 3 30 30 H 1.09001 * 109.47148 * 119.99967 * 2 1 3 31 31 H 1.09001 * 109.46871 * 60.00063 * 6 5 3 32 32 H 1.09000 * 109.47301 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46950 * 300.00399 * 6 5 3 34 34 H 1.08996 * 110.31769 * 63.11728 * 10 9 7 35 35 H 1.09001 * 110.31480 * 300.93163 * 10 9 7 36 36 H 1.09007 * 112.37195 * 64.27759 * 13 11 10 37 37 H 1.09004 * 112.36861 * 191.71198 * 13 11 10 38 38 H 1.08998 * 110.31776 * 169.86114 * 16 14 9 39 39 H 1.09000 * 110.31492 * 47.67280 * 16 14 9 40 40 H 0.96999 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5985 1.9840 0.8367 5 8 1.6719 2.0779 -1.2259 6 6 1.4649 3.4871 -1.1109 7 6 3.5408 1.4447 0.1361 8 8 4.2341 1.7799 -0.8009 9 7 4.1127 1.0742 1.2989 10 6 3.4211 0.7402 2.5626 11 6 4.5622 0.4373 3.5826 12 1 4.2962 0.5045 4.6375 13 6 5.6573 1.4315 3.0538 14 6 5.5721 0.9184 1.5716 15 1 6.2474 1.3740 0.8474 16 6 5.7519 -0.6121 1.8151 17 7 5.1196 -0.8704 3.1266 18 6 5.0574 -2.0675 3.7888 19 1 4.5640 -2.1292 4.7475 20 6 5.6284 -3.2015 3.2278 21 7 6.2301 -3.1261 2.0596 22 14 5.5442 -4.8342 4.1314 23 1 4.3120 -5.5592 3.7299 24 1 6.7345 -5.6527 3.7868 25 1 5.5192 -4.5888 5.5958 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3830 3.9622 -0.7654 32 1 1.1883 3.8944 -2.0834 33 1 0.6649 3.6796 -0.3959 34 1 2.7905 -0.1385 2.4281 35 1 2.8245 1.5867 2.9026 36 1 5.3528 2.4737 3.1502 37 1 6.6345 1.2482 3.5007 38 1 6.8108 -0.8682 1.8486 39 1 5.2486 -1.1813 1.0336 40 1 6.6295 -3.9185 1.6678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032311147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:24 Heat of formation + Delta-G solvation = -24.150814 kcal Electronic energy + Delta-G solvation = -21938.636448 eV Core-core repulsion = 18755.459600 eV Total energy + Delta-G solvation = -3183.176849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26265 -38.64920 -36.78129 -33.92857 -33.27410 -31.43514 -29.20641 -28.60002 -27.60603 -25.91634 -25.21616 -23.49834 -21.86221 -20.55628 -19.87042 -18.56285 -17.48824 -16.82434 -16.27035 -15.71723 -15.21876 -14.97067 -14.53375 -14.16748 -13.93404 -13.59342 -13.34438 -13.08193 -12.55249 -12.19463 -12.00652 -11.78595 -11.70897 -11.53665 -11.33518 -11.15254 -10.96792 -10.88683 -10.73679 -10.66614 -10.62961 -10.35222 -10.24294 -10.08660 -9.65823 -8.99930 -8.69357 -8.00692 -6.95525 -5.79038 -3.14009 2.97574 3.27488 3.35622 3.40375 3.43214 3.87648 4.39552 4.72600 4.92545 4.99092 5.09684 5.16025 5.26878 5.33637 5.35883 5.42985 5.53447 5.55741 5.60260 5.66222 5.75302 5.81109 5.88301 5.98383 6.15134 6.17505 6.26809 6.36123 6.38241 6.49969 6.56862 6.66877 7.08491 7.40240 7.47354 7.69745 8.06017 8.09538 8.59830 9.07654 9.68646 10.37586 11.32954 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.005963 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.891496 B = 4694.855147 C = 5204.608339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.079 0.921 5 O -0.358 6.358 6 C 0.031 3.969 7 C 0.504 3.496 8 O -0.542 6.542 9 N -0.605 5.605 10 C 0.079 3.921 11 C 0.141 3.859 12 H 0.107 0.893 13 C -0.150 4.150 14 C 0.097 3.903 15 H 0.113 0.887 16 C 0.174 3.826 17 N -0.597 5.597 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 10.657 0.226 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.021 3.979 4 H 0.096 0.904 5 O -0.275 6.275 6 C -0.066 4.066 7 C 0.291 3.709 8 O -0.420 6.420 9 N -0.341 5.341 10 C -0.046 4.046 11 C 0.032 3.968 12 H 0.125 0.875 13 C -0.190 4.190 14 C -0.006 4.006 15 H 0.131 0.869 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.361 4.361 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.896 10.471 -0.584 13.752 hybrid contribution 0.002 -0.759 0.599 0.967 sum -8.895 9.711 0.015 13.169 Atomic orbital electron populations 1.21699 0.94706 1.01973 1.01850 1.21620 0.96784 0.92886 1.04457 1.22050 0.91278 0.96377 0.88207 0.90372 1.87975 1.88411 1.20492 1.30657 1.22805 0.99503 0.81910 1.02360 1.20895 0.90785 0.77525 0.81658 1.90661 1.64492 1.48572 1.38285 1.49282 1.08639 1.65809 1.10329 1.23407 0.97136 0.98911 0.85185 1.23174 0.90890 0.87052 0.95689 0.87548 1.24133 1.00922 0.97961 0.95939 1.24354 0.81111 0.99782 0.95334 0.86938 1.21929 0.98247 0.87198 0.87712 1.45241 1.64466 1.03204 1.19178 1.19038 1.31509 0.84204 1.01324 0.90144 1.24817 1.00269 0.98008 0.97064 1.69915 1.41171 1.28371 1.17064 0.86126 0.77166 0.83664 0.78794 1.21594 1.21679 1.20632 0.92130 0.92235 0.92947 0.90489 0.89217 0.93931 0.89508 0.94228 0.90726 0.92973 0.91741 0.89759 0.92627 0.93447 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.81 37.15 0.36 -1.32 16 2 C -0.12 -1.76 5.57 -26.73 -0.15 -1.91 16 3 C 0.08 1.26 1.94 -27.88 -0.05 1.21 16 4 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16 5 O -0.36 -5.62 9.46 -54.96 -0.52 -6.14 16 6 C 0.03 0.37 10.81 101.05 1.09 1.46 16 7 C 0.50 9.58 7.17 -10.99 -0.08 9.50 16 8 O -0.54 -12.24 16.87 -14.17 -0.24 -12.48 16 9 N -0.61 -11.16 2.95 -156.78 -0.46 -11.62 16 10 C 0.08 1.30 5.62 -1.67 -0.01 1.29 16 11 C 0.14 2.53 5.53 -62.56 -0.35 2.19 16 12 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 13 C -0.15 -2.51 6.81 -22.31 -0.15 -2.66 16 14 C 0.10 1.88 5.25 -62.56 -0.33 1.55 16 15 H 0.11 2.17 8.03 -51.93 -0.42 1.76 16 16 C 0.17 4.14 4.76 -1.68 -0.01 4.14 16 17 N -0.60 -14.00 3.02 -156.35 -0.47 -14.48 16 18 C -0.23 -6.06 10.37 -15.06 -0.16 -6.21 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -26.51 10.56 55.49 0.59 -25.92 16 22 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.70 7.84 -51.93 -0.41 0.29 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.40 5.80 -51.93 -0.30 1.10 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 1.31 6.19 -51.93 -0.32 0.99 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.46 7.46 -51.93 -0.39 1.08 16 39 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -31.81 321.02 -7.61 -39.42 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.40 Total: 1.00 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 0.08 Total: 9.00 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.35 Total: -52.02 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.76 Total: -18.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.81 -7.61 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032311147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.270 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds