Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.47020 * 2 1 4 4 H 1.08994 * 109.46936 * 54.50797 * 3 2 1 5 5 O 1.42896 * 109.47069 * 294.50260 * 3 2 1 6 6 C 1.42900 * 113.99705 * 149.99890 * 5 3 2 7 7 C 1.50696 * 109.46887 * 174.50459 * 3 2 1 8 8 O 1.21286 * 119.99946 * 110.38940 * 7 3 2 9 9 N 1.34780 * 120.00659 * 290.39088 * 7 3 2 10 10 C 1.47874 * 126.93708 * 354.91718 * 9 7 3 11 11 C 1.56018 * 105.09962 * 182.02650 * 10 9 7 12 12 H 1.08999 * 116.24685 * 159.68500 * 11 10 9 13 13 C 1.57075 * 99.60926 * 32.80378 * 11 10 9 14 14 C 1.49288 * 126.95133 * 174.94467 * 9 7 3 15 15 H 1.09001 * 116.14685 * 15.82032 * 14 9 7 16 16 C 1.56014 * 104.09313 * 246.67537 * 14 9 7 17 17 N 1.47869 * 105.10284 * 288.76522 * 16 14 9 18 18 C 1.36939 * 126.94275 * 181.97897 * 17 16 14 19 19 H 1.07998 * 119.99661 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00053 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00109 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47116 * 90.00442 * 22 20 18 24 24 H 1.48501 * 109.47219 * 210.00211 * 22 20 18 25 25 H 1.48502 * 109.47061 * 330.00491 * 22 20 18 26 26 H 1.09001 * 109.47148 * 60.00033 * 1 2 3 27 27 H 1.09003 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47228 * 300.00046 * 1 2 3 29 29 H 1.09000 * 109.47461 * 240.00312 * 2 1 3 30 30 H 1.09001 * 109.47148 * 119.99967 * 2 1 3 31 31 H 1.09001 * 109.46871 * 60.00063 * 6 5 3 32 32 H 1.09000 * 109.47301 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46950 * 300.00399 * 6 5 3 34 34 H 1.08996 * 110.31769 * 63.11728 * 10 9 7 35 35 H 1.09001 * 110.31480 * 300.93163 * 10 9 7 36 36 H 1.09007 * 112.37195 * 64.27759 * 13 11 10 37 37 H 1.09004 * 112.36861 * 191.71198 * 13 11 10 38 38 H 1.08998 * 110.31776 * 169.86114 * 16 14 9 39 39 H 1.09000 * 110.31492 * 47.67280 * 16 14 9 40 40 H 0.96999 * 120.00212 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5985 1.9840 0.8367 5 8 1.6719 2.0779 -1.2259 6 6 1.4649 3.4871 -1.1109 7 6 3.5408 1.4447 0.1361 8 8 4.2341 1.7799 -0.8009 9 7 4.1127 1.0742 1.2989 10 6 3.4211 0.7402 2.5626 11 6 4.5622 0.4373 3.5826 12 1 4.2962 0.5045 4.6375 13 6 5.6573 1.4315 3.0538 14 6 5.5721 0.9184 1.5716 15 1 6.2474 1.3740 0.8474 16 6 5.7519 -0.6121 1.8151 17 7 5.1196 -0.8704 3.1266 18 6 5.0574 -2.0675 3.7888 19 1 4.5640 -2.1292 4.7475 20 6 5.6284 -3.2015 3.2278 21 7 6.2301 -3.1261 2.0596 22 14 5.5442 -4.8342 4.1314 23 1 4.3120 -5.5592 3.7299 24 1 6.7345 -5.6527 3.7868 25 1 5.5192 -4.5888 5.5958 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3830 3.9622 -0.7654 32 1 1.1883 3.8944 -2.0834 33 1 0.6649 3.6796 -0.3959 34 1 2.7905 -0.1385 2.4281 35 1 2.8245 1.5867 2.9026 36 1 5.3528 2.4737 3.1502 37 1 6.6345 1.2482 3.5007 38 1 6.8108 -0.8682 1.8486 39 1 5.2486 -1.1813 1.0336 40 1 6.6295 -3.9185 1.6678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032311147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -44.537910 kcal Electronic energy + Delta-G solvation = -21939.520499 eV Core-core repulsion = 18755.459600 eV Total energy + Delta-G solvation = -3184.060899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75193 -40.03950 -38.16576 -35.55627 -34.64965 -33.11709 -30.84726 -30.25502 -28.69811 -26.99186 -26.97652 -25.14377 -23.11876 -22.02728 -21.43269 -20.14438 -19.03167 -18.27347 -17.77839 -17.18363 -16.57727 -16.47900 -15.96228 -15.80869 -15.23833 -14.99148 -14.65285 -14.49907 -13.83240 -13.69004 -13.45944 -13.27474 -13.18612 -12.91637 -12.85026 -12.69869 -12.52521 -12.35735 -12.15699 -12.10031 -11.99968 -11.86898 -11.71995 -11.56347 -11.49990 -10.78069 -10.29069 -9.55159 -8.90402 -7.83416 -5.19287 1.48229 1.49104 1.51032 1.58060 1.89841 2.49609 2.76527 3.33000 3.35944 3.51771 3.79144 3.81914 3.86067 3.90626 4.03467 4.20098 4.27404 4.43025 4.48034 4.53183 4.59893 4.64933 4.79802 4.81524 4.84686 4.93416 5.01394 5.09515 5.11081 5.14715 5.25583 5.38652 5.46055 5.51834 5.65845 6.02895 6.10368 6.63399 7.03533 7.12456 7.72209 8.42546 9.27934 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.005963 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.891496 B = 4694.855147 C = 5204.608339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.092 3.908 4 H 0.116 0.884 5 O -0.381 6.381 6 C 0.024 3.976 7 C 0.495 3.505 8 O -0.588 6.588 9 N -0.606 5.606 10 C 0.084 3.916 11 C 0.136 3.864 12 H 0.139 0.861 13 C -0.127 4.127 14 C 0.096 3.904 15 H 0.107 0.893 16 C 0.189 3.811 17 N -0.615 5.615 18 C -0.227 4.227 19 H 0.098 0.902 20 C -0.071 4.071 21 N -0.959 5.959 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.304 1.304 25 H -0.261 1.261 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.016 0.984 39 H -0.004 1.004 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 12.685 2.587 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C 0.031 3.969 4 H 0.133 0.867 5 O -0.299 6.299 6 C -0.072 4.072 7 C 0.284 3.716 8 O -0.469 6.469 9 N -0.340 5.340 10 C -0.040 4.040 11 C 0.030 3.970 12 H 0.157 0.843 13 C -0.166 4.166 14 C -0.007 4.007 15 H 0.125 0.875 16 C 0.063 3.937 17 N -0.340 5.340 18 C -0.356 4.356 19 H 0.116 0.884 20 C -0.264 4.264 21 N -0.609 5.609 22 Si 0.805 3.195 23 H -0.217 1.217 24 H -0.231 1.231 25 H -0.185 1.185 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.014 0.986 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.501 12.542 1.834 17.115 hybrid contribution 0.791 -1.329 -0.150 1.554 sum -10.709 11.213 1.684 15.596 Atomic orbital electron populations 1.21649 0.91797 1.02756 1.03105 1.21586 0.99199 0.92344 1.02444 1.22063 0.88282 0.97028 0.89534 0.86687 1.87957 1.88169 1.22600 1.31150 1.23046 1.00000 0.79822 1.04311 1.21776 0.92519 0.76435 0.80868 1.90630 1.65914 1.50698 1.39683 1.49368 1.08123 1.65263 1.11230 1.23407 0.96483 1.00614 0.83514 1.23621 0.91478 0.84158 0.97739 0.84304 1.24035 1.00504 0.99587 0.92512 1.24175 0.82392 0.96496 0.97670 0.87460 1.21492 0.95288 0.89855 0.87112 1.45486 1.64749 1.04809 1.18907 1.19551 1.29437 0.85076 1.01512 0.88391 1.25649 1.01195 1.01556 0.97975 1.70165 1.43278 1.28358 1.19069 0.85110 0.76181 0.79607 0.78633 1.21728 1.23127 1.18531 0.91892 0.91779 0.90558 0.93450 0.90414 0.95131 0.88002 0.91034 0.91909 0.87759 0.87897 0.90162 0.96598 0.98596 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.81 71.98 0.71 -2.10 16 2 C -0.12 -3.36 5.57 30.60 0.17 -3.19 16 3 C 0.09 2.64 1.94 29.85 0.06 2.69 16 4 H 0.12 2.43 7.66 -2.39 -0.02 2.41 16 5 O -0.38 -11.32 9.46 -130.12 -1.23 -12.55 16 6 C 0.02 0.51 10.81 113.37 1.23 1.73 16 7 C 0.49 18.54 7.17 87.66 0.63 19.17 16 8 O -0.59 -27.09 16.87 15.81 0.27 -26.82 16 9 N -0.61 -21.63 2.95 -768.33 -2.26 -23.90 16 10 C 0.08 2.47 5.62 87.16 0.49 2.96 16 11 C 0.14 4.46 5.53 46.93 0.26 4.72 16 12 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 13 C -0.13 -3.90 6.81 33.46 0.23 -3.67 16 14 C 0.10 3.75 5.25 46.93 0.25 4.00 16 15 H 0.11 4.28 8.03 -2.39 -0.02 4.26 16 16 C 0.19 9.41 4.76 87.16 0.42 9.83 16 17 N -0.62 -28.75 3.02 -648.58 -1.96 -30.71 16 18 C -0.23 -11.73 10.37 84.03 0.87 -10.85 16 19 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 20 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 21 N -0.96 -58.40 10.56 21.65 0.23 -58.17 16 22 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H 0.06 1.28 7.84 -2.39 -0.02 1.26 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 2.39 5.80 -2.39 -0.01 2.38 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 34 H 0.06 2.06 6.19 -2.39 -0.01 2.04 16 35 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.02 0.90 7.46 -2.39 -0.02 0.88 16 39 H 0.00 -0.25 7.68 -2.39 -0.02 -0.27 16 40 H 0.24 14.64 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -74.25 321.02 3.85 -70.41 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.01 Total: 13.22 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 5.76 Total: 21.80 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.99 Total: -112.77 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.96 Total: -39.38 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.25 3.85 -70.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032311147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.869 kcal (2) G-P(sol) polarization free energy of solvation -74.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds